Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99747 * 2 1 4 4 H 1.48499 * 109.46651 * 269.99806 * 3 2 1 5 5 H 1.48495 * 109.47275 * 29.99606 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99967 * 3 2 1 7 7 C 1.37878 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99505 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00255 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.92134 * 269.72273 * 10 9 7 12 12 C 1.38107 * 120.07582 * 180.28015 * 11 10 9 13 13 C 1.38910 * 119.92007 * 359.97438 * 12 11 10 14 14 N 1.39676 * 120.07453 * 180.02562 * 13 12 11 15 15 C 1.46508 * 119.99667 * 359.97438 * 14 13 12 16 16 H 1.08994 * 109.57148 * 324.99956 * 15 14 13 17 17 C 1.54526 * 109.57147 * 204.75117 * 15 14 13 18 18 C 1.45879 * 111.66955 * 162.96002 * 17 15 14 19 19 C 1.53973 * 112.67026 * 61.49568 * 18 17 15 20 20 N 1.44300 * 108.31306 * 278.59121 * 19 18 17 21 21 C 1.47949 * 113.64228 * 95.39829 * 20 19 18 22 22 C 1.50542 * 109.57201 * 85.24577 * 15 14 13 23 23 C 1.38912 * 119.85498 * 0.02562 * 13 12 11 24 24 C 1.38099 * 119.92393 * 359.97438 * 23 13 12 25 25 H 0.96997 * 120.00764 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46934 * 60.00090 * 9 7 2 27 27 H 1.09002 * 109.46712 * 300.00352 * 9 7 2 28 28 H 1.07997 * 119.96260 * 0.25959 * 11 10 9 29 29 H 1.07996 * 120.03841 * 180.02562 * 12 11 10 30 30 H 0.96992 * 120.00695 * 179.97438 * 14 13 12 31 31 H 1.09001 * 109.03763 * 283.51991 * 17 15 14 32 32 H 1.08999 * 109.03940 * 42.39432 * 17 15 14 33 33 H 1.09003 * 108.83741 * 182.31810 * 18 17 15 34 34 H 1.09004 * 108.84042 * 300.77574 * 18 17 15 35 35 H 1.09001 * 109.70061 * 38.29657 * 19 18 17 36 36 H 1.09002 * 109.69688 * 158.88725 * 19 18 17 37 37 H 1.00899 * 111.00530 * 221.34644 * 20 19 18 38 38 H 1.09002 * 108.71021 * 79.13604 * 21 20 19 39 39 H 1.09002 * 108.71023 * 197.14593 * 21 20 19 40 40 H 1.08994 * 108.78959 * 332.45786 * 22 15 14 41 41 H 1.09003 * 108.78535 * 90.66815 * 22 15 14 42 42 H 1.08001 * 120.03644 * 180.02562 * 23 13 12 43 43 H 1.07995 * 119.96616 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0010 11 6 4.2489 -3.2634 1.1995 12 6 4.7148 -4.5635 1.2031 13 6 4.9469 -5.2197 0.0009 14 7 5.4175 -6.5347 0.0008 15 6 5.6675 -7.2234 1.2696 16 1 6.0400 -6.5102 2.0048 17 6 6.7140 -8.3399 1.0551 18 6 7.2928 -8.7855 2.3178 19 6 6.2438 -9.3834 3.2733 20 7 5.5735 -8.2978 3.9473 21 6 4.3046 -7.8928 3.3032 22 6 4.3886 -7.8408 1.7688 23 6 4.7098 -4.5651 -1.2012 24 6 4.2439 -3.2651 -1.1975 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6802 -0.8888 28 1 4.0682 -2.7526 2.1337 29 1 4.8977 -5.0696 2.1394 30 1 5.5789 -6.9921 -0.8392 31 1 6.2345 -9.1873 0.5651 32 1 7.5097 -7.9629 0.4126 33 1 8.0511 -9.5405 2.1104 34 1 7.7680 -7.9350 2.8068 35 1 5.5191 -9.9663 2.7049 36 1 6.7364 -10.0226 4.0061 37 1 5.4316 -8.5107 4.9233 38 1 3.5263 -8.6008 3.5880 39 1 4.0262 -6.9048 3.6700 40 1 3.5473 -7.2606 1.3898 41 1 4.3145 -8.8568 1.3809 42 1 4.8888 -5.0726 -2.1375 43 1 4.0590 -2.7557 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925820497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = 19.140004 kcal Electronic energy + Delta-G solvation = -20869.652372 eV Core-core repulsion = 17913.727238 eV Total energy + Delta-G solvation = -2955.925134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68742 -38.34467 -35.53298 -33.41996 -32.80450 -31.66091 -30.17512 -29.83703 -26.73096 -25.60055 -24.61153 -22.44988 -22.12316 -20.49743 -20.18879 -19.63608 -17.11497 -16.78594 -16.66587 -15.88528 -15.42818 -14.70615 -14.63255 -14.13117 -13.93758 -13.70195 -13.49644 -13.15026 -12.87464 -12.79918 -12.62949 -12.32630 -12.03713 -11.69443 -11.45297 -11.31079 -11.19850 -11.00546 -10.79732 -10.63706 -10.54046 -10.19274 -10.00866 -9.85261 -9.39188 -9.05301 -8.56501 -8.50090 -8.20663 -6.69688 -5.99138 -3.96784 2.15134 2.38525 3.34443 3.41795 3.45989 3.64524 3.94653 4.47996 4.49143 4.61366 4.67061 4.79635 4.93993 5.01230 5.24760 5.30839 5.33133 5.35893 5.46575 5.52365 5.61791 5.63495 5.78928 5.83067 5.91444 6.03600 6.06740 6.08642 6.14407 6.25357 6.31350 6.48772 6.71584 6.88136 6.89506 7.12499 7.15418 7.16473 7.26691 7.50751 7.79589 7.80539 7.90396 8.12105 8.61131 9.07872 9.62313 11.14107 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.003521 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.388481 B = 7950.022229 C = 8315.693969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.508 4.508 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.082 4.082 11 C -0.078 4.078 12 C -0.194 4.194 13 C 0.187 3.813 14 N -0.755 5.755 15 C 0.166 3.834 16 H 0.088 0.912 17 C -0.121 4.121 18 C -0.114 4.114 19 C 0.065 3.935 20 N -0.701 5.701 21 C 0.066 3.934 22 C -0.138 4.138 23 C -0.195 4.195 24 C -0.078 4.078 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.391 0.609 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.345 0.655 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.125 -19.304 4.779 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.084 4.084 11 C -0.097 4.097 12 C -0.216 4.216 13 C 0.087 3.913 14 N -0.386 5.386 15 C 0.060 3.940 16 H 0.106 0.894 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.065 4.065 20 N -0.333 5.333 21 C -0.063 4.063 22 C -0.177 4.177 23 C -0.217 4.217 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.224 0.776 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.326 -18.774 4.625 24.064 hybrid contribution -0.371 -0.092 -0.121 0.400 sum 13.955 -18.866 4.505 23.895 Atomic orbital electron populations 1.69905 1.06265 1.26802 1.51330 1.25020 0.94719 0.99006 0.94722 0.86807 0.80441 0.83726 0.78553 1.20273 1.21401 1.18898 1.21031 0.88681 0.94482 1.50410 0.90924 1.18699 0.97104 0.89078 0.96876 1.20025 0.97945 0.98261 0.92122 1.20817 0.97210 0.93647 0.97997 1.20571 1.08961 0.96239 0.95802 1.17618 0.95376 0.84349 0.93911 1.44598 1.75381 1.11772 1.06859 1.20464 0.93318 0.93680 0.86554 0.89448 1.20791 0.98788 0.97938 0.98361 1.20451 0.97937 1.01278 0.95572 1.21612 0.96190 0.91720 0.96979 1.59043 1.25908 1.42163 1.06182 1.22161 0.89143 1.00707 0.94246 1.21958 1.00121 1.01262 0.94378 1.20449 1.09450 0.96360 0.95452 1.20780 0.97286 0.93563 0.98048 0.92765 0.95808 0.96273 0.86663 0.86926 0.77602 0.92455 0.91597 0.92161 0.90869 0.94133 0.91827 0.83705 0.95237 0.90639 0.90254 0.92681 0.87416 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.51 -14.81 9.65 -34.44 -0.33 -15.14 16 8 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 9 C 0.02 0.49 4.17 -29.04 -0.12 0.36 16 10 C -0.08 -1.80 5.07 -104.59 -0.53 -2.33 16 11 C -0.08 -1.56 9.69 -39.61 -0.38 -1.94 16 12 C -0.19 -3.34 9.17 -39.38 -0.36 -3.70 16 13 C 0.19 3.03 6.51 -83.79 -0.55 2.48 16 14 N -0.75 -9.50 5.16 -52.58 -0.27 -9.77 16 15 C 0.17 1.82 1.85 -68.35 -0.13 1.69 16 16 H 0.09 1.12 6.14 -51.93 -0.32 0.80 16 17 C -0.12 -1.05 4.84 -29.30 -0.14 -1.20 16 18 C -0.11 -0.89 5.38 -29.59 -0.16 -1.05 16 19 C 0.07 0.48 6.15 -4.71 -0.03 0.46 16 20 N -0.70 -5.90 6.18 -113.88 -0.70 -6.60 16 21 C 0.07 0.64 6.43 -2.85 -0.02 0.62 16 22 C -0.14 -1.47 4.87 -27.56 -0.13 -1.60 16 23 C -0.19 -3.33 9.90 -39.38 -0.39 -3.72 16 24 C -0.08 -1.55 9.69 -39.62 -0.38 -1.93 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 27 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.11 1.75 6.21 -52.49 -0.33 1.42 16 30 H 0.39 4.28 8.62 -40.82 -0.35 3.93 16 31 H 0.06 0.47 7.60 -51.93 -0.39 0.07 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.04 0.32 6.79 -51.93 -0.35 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.34 2.35 8.89 -39.29 -0.35 2.00 16 38 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.02 7.84 -51.93 -0.41 0.62 16 41 H 0.05 0.55 6.67 -51.93 -0.35 0.20 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -31.40 335.02 -10.57 -41.97 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.00 Total: 4.76 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.75 Total: -25.15 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.20 Total: -43.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.40 -10.57 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925820497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.109 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds