Wall clock time and date at job start Mon Mar 30 2020 02:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99747 * 2 1 4 4 H 1.48499 * 109.46651 * 269.99806 * 3 2 1 5 5 H 1.48495 * 109.47275 * 29.99606 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99967 * 3 2 1 7 7 C 1.37878 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99505 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00255 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.92134 * 269.72273 * 10 9 7 12 12 C 1.38107 * 120.07582 * 180.28015 * 11 10 9 13 13 C 1.38910 * 119.92007 * 359.97438 * 12 11 10 14 14 N 1.39676 * 120.07453 * 180.02562 * 13 12 11 15 15 C 1.46508 * 119.99667 * 359.97438 * 14 13 12 16 16 H 1.08994 * 109.57148 * 324.99956 * 15 14 13 17 17 C 1.54526 * 109.57147 * 204.75117 * 15 14 13 18 18 C 1.45879 * 111.66955 * 162.96002 * 17 15 14 19 19 C 1.53973 * 112.67026 * 61.49568 * 18 17 15 20 20 N 1.44300 * 108.31306 * 278.59121 * 19 18 17 21 21 C 1.47949 * 113.64228 * 95.39829 * 20 19 18 22 22 C 1.50542 * 109.57201 * 85.24577 * 15 14 13 23 23 C 1.38912 * 119.85498 * 0.02562 * 13 12 11 24 24 C 1.38099 * 119.92393 * 359.97438 * 23 13 12 25 25 H 0.96997 * 120.00764 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46934 * 60.00090 * 9 7 2 27 27 H 1.09002 * 109.46712 * 300.00352 * 9 7 2 28 28 H 1.07997 * 119.96260 * 0.25959 * 11 10 9 29 29 H 1.07996 * 120.03841 * 180.02562 * 12 11 10 30 30 H 0.96992 * 120.00695 * 179.97438 * 14 13 12 31 31 H 1.09001 * 109.03763 * 283.51991 * 17 15 14 32 32 H 1.08999 * 109.03940 * 42.39432 * 17 15 14 33 33 H 1.09003 * 108.83741 * 182.31810 * 18 17 15 34 34 H 1.09004 * 108.84042 * 300.77574 * 18 17 15 35 35 H 1.09001 * 109.70061 * 38.29657 * 19 18 17 36 36 H 1.09002 * 109.69688 * 158.88725 * 19 18 17 37 37 H 1.00899 * 111.00530 * 221.34644 * 20 19 18 38 38 H 1.09002 * 108.71021 * 79.13604 * 21 20 19 39 39 H 1.09002 * 108.71023 * 197.14593 * 21 20 19 40 40 H 1.08994 * 108.78959 * 332.45786 * 22 15 14 41 41 H 1.09003 * 108.78535 * 90.66815 * 22 15 14 42 42 H 1.08001 * 120.03644 * 180.02562 * 23 13 12 43 43 H 1.07995 * 119.96616 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0010 11 6 4.2489 -3.2634 1.1995 12 6 4.7148 -4.5635 1.2031 13 6 4.9469 -5.2197 0.0009 14 7 5.4175 -6.5347 0.0008 15 6 5.6675 -7.2234 1.2696 16 1 6.0400 -6.5102 2.0048 17 6 6.7140 -8.3399 1.0551 18 6 7.2928 -8.7855 2.3178 19 6 6.2438 -9.3834 3.2733 20 7 5.5735 -8.2978 3.9473 21 6 4.3046 -7.8928 3.3032 22 6 4.3886 -7.8408 1.7688 23 6 4.7098 -4.5651 -1.2012 24 6 4.2439 -3.2651 -1.1975 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6802 -0.8888 28 1 4.0682 -2.7526 2.1337 29 1 4.8977 -5.0696 2.1394 30 1 5.5789 -6.9921 -0.8392 31 1 6.2345 -9.1873 0.5651 32 1 7.5097 -7.9629 0.4126 33 1 8.0511 -9.5405 2.1104 34 1 7.7680 -7.9350 2.8068 35 1 5.5191 -9.9663 2.7049 36 1 6.7364 -10.0226 4.0061 37 1 5.4316 -8.5107 4.9233 38 1 3.5263 -8.6008 3.5880 39 1 4.0262 -6.9048 3.6700 40 1 3.5473 -7.2606 1.3898 41 1 4.3145 -8.8568 1.3809 42 1 4.8888 -5.0726 -2.1375 43 1 4.0590 -2.7557 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925820497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:49 Heat of formation + Delta-G solvation = -1.034041 kcal Electronic energy + Delta-G solvation = -20870.527184 eV Core-core repulsion = 17913.727238 eV Total energy + Delta-G solvation = -2956.799946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74511 -39.49619 -36.69133 -35.05861 -33.94232 -32.98598 -31.68367 -31.26877 -28.30629 -26.34643 -25.67891 -24.18756 -23.49890 -21.60855 -21.25344 -20.68094 -18.92342 -18.11218 -17.82828 -16.80592 -16.50264 -16.28546 -15.81767 -15.45700 -15.08739 -14.96632 -14.61368 -14.35853 -14.24288 -14.10733 -13.82159 -13.55207 -13.49960 -13.36577 -12.91447 -12.50335 -12.36163 -12.06679 -11.89703 -11.69508 -11.68548 -11.56467 -11.48117 -11.44262 -11.39239 -10.75897 -10.56982 -9.67266 -9.22950 -8.27665 -8.03411 -6.30885 0.68418 0.89450 1.37352 1.39362 1.52084 2.37986 2.57702 3.07232 3.14268 3.28912 3.68179 3.97490 4.08676 4.17879 4.18360 4.24229 4.28181 4.44556 4.45507 4.60223 4.67304 4.72855 4.75275 4.77455 4.86884 4.95925 5.11131 5.12790 5.15825 5.18486 5.19038 5.27248 5.34075 5.38084 5.50511 5.55274 5.61998 5.72286 6.08229 6.17429 6.23606 6.32858 6.57901 6.63161 6.75924 7.01787 7.32396 8.89946 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.003521 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.388481 B = 7950.022229 C = 8315.693969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.516 4.516 8 H 0.025 0.975 9 C 0.028 3.972 10 C -0.123 4.123 11 C -0.089 4.089 12 C -0.195 4.195 13 C 0.201 3.799 14 N -0.741 5.741 15 C 0.164 3.836 16 H 0.071 0.929 17 C -0.113 4.113 18 C -0.113 4.113 19 C 0.064 3.936 20 N -0.707 5.707 21 C 0.069 3.931 22 C -0.132 4.132 23 C -0.195 4.195 24 C -0.089 4.089 25 H 0.267 0.733 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.403 0.597 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.354 0.646 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.548 -20.845 4.748 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.554 4.554 8 H 0.043 0.957 9 C -0.009 4.009 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.217 4.217 13 C 0.099 3.901 14 N -0.372 5.372 15 C 0.059 3.941 16 H 0.089 0.911 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.066 4.066 20 N -0.340 5.340 21 C -0.060 4.060 22 C -0.172 4.172 23 C -0.217 4.217 24 C -0.107 4.107 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.129 0.871 29 H 0.147 0.853 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.174 0.826 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.156 0.844 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.779 -20.370 4.598 26.788 hybrid contribution -1.131 0.171 -0.086 1.147 sum 15.647 -20.198 4.512 25.946 Atomic orbital electron populations 1.70065 1.08300 1.28161 1.52786 1.26016 0.95629 1.03432 0.94128 0.85630 0.79452 0.78076 0.79351 1.18946 1.20781 1.17086 1.21264 0.91198 0.92807 1.50162 0.95667 1.18532 0.93954 0.91591 0.96872 1.19900 1.01273 0.97492 0.93809 1.20868 0.97827 0.94834 0.97285 1.20678 1.08560 0.95332 0.97138 1.17707 0.93600 0.85577 0.93233 1.44667 1.73791 1.10374 1.08349 1.20584 0.94253 0.93993 0.85291 0.91067 1.20743 0.98039 0.97195 0.99103 1.20455 0.98364 1.01338 0.95016 1.21677 0.96049 0.91486 0.97354 1.59010 1.25180 1.42972 1.06865 1.22052 0.90159 1.00271 0.93517 1.21869 0.98765 1.01379 0.95161 1.20683 1.08544 0.95392 0.97074 1.20877 0.97704 0.94851 0.97303 0.92454 0.95741 0.95723 0.87060 0.85343 0.76160 0.91265 0.91342 0.90271 0.92186 0.94092 0.90040 0.82646 0.94467 0.92139 0.92754 0.91445 0.84409 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 2 C 0.00 0.26 5.47 84.66 0.46 0.72 16 3 Si 0.95 45.51 27.47 68.60 1.88 47.40 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 7 C -0.52 -31.34 9.65 25.60 0.25 -31.09 16 8 H 0.02 1.71 7.98 -2.91 -0.02 1.68 16 9 C 0.03 1.40 4.17 29.10 0.12 1.52 16 10 C -0.12 -5.52 5.07 -19.84 -0.10 -5.62 16 11 C -0.09 -3.64 9.69 22.25 0.22 -3.43 16 12 C -0.19 -6.66 9.17 22.40 0.21 -6.46 16 13 C 0.20 6.22 6.51 38.21 0.25 6.47 16 14 N -0.74 -16.91 5.16 -320.26 -1.65 -18.56 16 15 C 0.16 3.26 1.85 44.71 0.08 3.34 16 16 H 0.07 1.70 6.14 -2.39 -0.01 1.69 16 17 C -0.11 -1.62 4.84 28.93 0.14 -1.48 16 18 C -0.11 -1.44 5.38 28.74 0.15 -1.29 16 19 C 0.06 0.77 6.15 87.12 0.54 1.30 16 20 N -0.71 -10.52 6.18 -514.19 -3.18 -13.70 16 21 C 0.07 1.24 6.43 86.36 0.56 1.80 16 22 C -0.13 -2.61 4.87 30.05 0.15 -2.47 16 23 C -0.19 -6.38 9.90 22.40 0.22 -6.15 16 24 C -0.09 -3.53 9.69 22.25 0.22 -3.32 16 25 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 26 H 0.02 1.21 7.14 -2.39 -0.02 1.19 16 27 H 0.02 1.20 7.51 -2.39 -0.02 1.18 16 28 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.13 3.92 6.21 -2.91 -0.02 3.90 16 30 H 0.40 7.54 8.62 -92.71 -0.80 6.74 16 31 H 0.07 0.87 7.60 -2.39 -0.02 0.85 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.95 8.08 -2.38 -0.02 0.93 16 35 H 0.04 0.51 6.79 -2.39 -0.02 0.49 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.35 4.15 8.89 -89.70 -0.80 3.35 16 38 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.36 7.84 -2.39 -0.02 1.34 16 41 H 0.07 1.17 6.67 -2.39 -0.02 1.15 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -70.14 335.02 0.16 -69.98 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.65 Total: 22.17 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 3.45 Total: -46.14 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -4.53 Total: -93.41 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -70.14 0.16 -69.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925820497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.946 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds