Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99740 * 2 1 4 4 H 1.48493 * 109.47297 * 240.00010 * 3 2 1 5 5 H 1.48501 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47097 * 120.00034 * 3 2 1 7 7 C 1.37876 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99538 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47046 * 179.97438 * 9 7 2 11 11 C 1.38283 * 119.92453 * 89.99526 * 10 9 7 12 12 C 1.38105 * 120.07717 * 180.02562 * 11 10 9 13 13 C 1.38916 * 119.92118 * 0.02562 * 12 11 10 14 14 N 1.39671 * 120.07350 * 180.02562 * 13 12 11 15 15 C 1.46502 * 119.99905 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.46910 * 324.99178 * 15 14 13 17 17 C 1.52997 * 109.47280 * 84.99793 * 15 14 13 18 18 C 1.52999 * 109.47058 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47222 * 299.99836 * 18 17 15 20 20 C 1.53001 * 109.46985 * 59.99734 * 19 18 17 21 21 H 1.08998 * 109.47371 * 60.00829 * 20 19 18 22 22 N 1.46912 * 109.47168 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.47358 * 300.00183 * 20 19 18 24 24 C 1.38908 * 119.85329 * 359.95597 * 13 12 11 25 25 C 1.38107 * 119.92279 * 0.06635 * 24 13 12 26 26 H 0.96996 * 119.99883 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47409 * 59.99592 * 9 7 2 28 28 H 1.09000 * 109.47483 * 299.99346 * 9 7 2 29 29 H 1.07995 * 119.96608 * 0.02907 * 11 10 9 30 30 H 1.07995 * 120.04503 * 179.73077 * 12 11 10 31 31 H 0.97007 * 120.00333 * 359.97438 * 14 13 12 32 32 H 1.09000 * 109.46914 * 299.99729 * 17 15 14 33 33 H 1.08998 * 109.47225 * 59.99975 * 17 15 14 34 34 H 1.09010 * 109.47383 * 59.99605 * 18 17 15 35 35 H 1.08998 * 109.47442 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.47696 * 179.97438 * 19 18 17 37 37 H 1.08998 * 109.47124 * 300.00076 * 19 18 17 38 38 H 1.00901 * 110.99740 * 300.00663 * 22 20 19 39 39 H 1.00903 * 110.99068 * 63.95542 * 22 20 19 40 40 H 1.08998 * 109.47133 * 299.99891 * 23 20 19 41 41 H 1.09003 * 109.46585 * 179.97438 * 23 20 19 42 42 H 1.08001 * 120.04079 * 180.02562 * 24 13 12 43 43 H 1.08001 * 119.96107 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6788 -4.1688 1.1990 12 6 3.5767 -5.2182 1.2027 13 6 4.0298 -5.7466 0.0005 14 7 4.9374 -6.8082 0.0005 15 6 5.4146 -7.3640 -1.2682 16 1 4.6115 -7.3305 -2.0045 17 6 6.6022 -6.5408 -1.7710 18 6 7.1001 -7.1208 -3.0963 19 6 7.5379 -8.5716 -2.8857 20 6 6.3503 -9.3948 -2.3828 21 1 5.5471 -9.3610 -3.1189 22 7 6.7705 -10.7880 -2.1811 23 6 5.8524 -8.8148 -1.0575 24 6 3.5771 -5.2179 -1.2016 25 6 2.6795 -4.1682 -1.1979 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.3264 -3.7573 2.1332 30 1 3.9298 -5.6243 2.1390 31 1 5.2524 -7.1771 0.8406 32 1 6.2902 -5.5073 -1.9215 33 1 7.4053 -6.5744 -1.0347 34 1 6.2969 -7.0870 -3.8325 35 1 7.9465 -6.5347 -3.4543 36 1 7.8923 -8.9851 -3.8300 37 1 8.3411 -8.6056 -2.1496 38 1 7.1036 -11.1936 -3.0429 39 1 7.4697 -10.8534 -1.4567 40 1 6.6556 -8.8487 -0.3214 41 1 5.0060 -9.4010 -0.6996 42 1 3.9270 -5.6267 -2.1379 43 1 2.3275 -3.7564 -2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925824295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = -20.623083 kcal Electronic energy + Delta-G solvation = -20587.954038 eV Core-core repulsion = 17630.304648 eV Total energy + Delta-G solvation = -2957.649390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72606 -39.51538 -36.62147 -35.07628 -33.90868 -32.31530 -31.64574 -30.30115 -28.72058 -27.65030 -24.83721 -24.08304 -22.90032 -22.49802 -21.35018 -20.88123 -18.48423 -18.15553 -17.21569 -16.79305 -16.63876 -16.06352 -15.59251 -15.33001 -15.23963 -14.67128 -14.60111 -14.53513 -14.27966 -14.10912 -13.81909 -13.47511 -13.23854 -13.14622 -13.04091 -12.53372 -12.42079 -12.26411 -12.08379 -11.86850 -11.66865 -11.55803 -11.48716 -11.42849 -11.27847 -10.57675 -10.52284 -9.67554 -9.54967 -8.29624 -7.94333 -6.30063 0.67875 0.89818 1.39390 1.42606 1.50914 2.41555 2.52961 3.12776 3.16182 3.53382 3.75256 3.93036 4.10319 4.13995 4.20845 4.21788 4.24690 4.44575 4.48909 4.52776 4.54838 4.68566 4.73172 4.78866 4.92198 4.99710 5.10856 5.13687 5.16737 5.20718 5.27396 5.34787 5.37926 5.41650 5.47207 5.56645 5.70941 5.81985 6.05345 6.24120 6.24947 6.27260 6.60491 6.62933 6.83155 6.99472 7.38153 8.92198 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.003243 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.963279 B = 8631.934671 C = 9030.990879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.064 3.936 10 C -0.123 4.123 11 C -0.089 4.089 12 C -0.192 4.192 13 C 0.201 3.799 14 N -0.739 5.739 15 C 0.158 3.842 16 H 0.069 0.931 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.145 4.145 20 C 0.098 3.902 21 H 0.075 0.925 22 N -0.851 5.851 23 C -0.107 4.107 24 C -0.194 4.194 25 C -0.090 4.090 26 H 0.265 0.735 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.404 0.596 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.350 0.650 39 H 0.345 0.655 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.132 0.868 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.498 -20.591 -4.400 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.214 4.214 13 C 0.099 3.901 14 N -0.370 5.370 15 C 0.052 3.948 16 H 0.087 0.913 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.184 4.184 20 C -0.014 4.014 21 H 0.093 0.907 22 N -0.381 5.381 23 C -0.146 4.146 24 C -0.216 4.216 25 C -0.109 4.109 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.239 0.761 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.150 0.850 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.623 -20.705 -4.377 26.911 hybrid contribution 0.838 1.569 0.059 1.780 sum 17.461 -19.136 -4.318 26.263 Atomic orbital electron populations 1.70087 1.07692 1.27899 1.51613 1.25962 0.95788 1.03138 0.94737 0.85503 0.78305 0.78125 0.79140 1.19276 1.20484 1.19286 1.21425 0.93017 0.91518 1.50509 0.92950 1.17973 0.92805 0.91381 0.95158 1.20126 1.00708 0.97803 0.93864 1.20828 0.97066 0.95809 0.97116 1.20669 1.03051 1.00503 0.97158 1.17667 0.90328 0.88969 0.93180 1.44530 1.48364 1.35861 1.08210 1.20828 0.95466 0.92610 0.85868 0.91307 1.22009 0.98087 0.99163 0.97854 1.21426 1.01168 0.96067 0.96517 1.22364 0.98643 0.95619 1.01809 1.21298 0.96636 0.87269 0.96204 0.90672 1.58874 1.48486 1.17091 1.13625 1.21659 1.01621 0.93318 0.97999 1.20673 1.03250 1.00487 0.97178 1.20828 0.97075 0.95890 0.97105 0.92641 0.98509 0.98441 0.87181 0.84370 0.76074 0.93316 0.91691 0.91756 0.91388 0.90967 0.91586 0.83613 0.84146 0.90839 0.91460 0.85000 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -31.41 9.09 25.60 0.23 -31.18 16 8 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.06 3.61 5.10 29.10 0.15 3.76 16 10 C -0.12 -5.78 5.07 -19.84 -0.10 -5.88 16 11 C -0.09 -3.68 9.69 22.25 0.22 -3.47 16 12 C -0.19 -6.32 9.90 22.40 0.22 -6.09 16 13 C 0.20 6.12 6.64 38.22 0.25 6.38 16 14 N -0.74 -16.27 5.25 -318.95 -1.67 -17.95 16 15 C 0.16 2.90 2.15 44.99 0.10 3.00 16 16 H 0.07 1.43 6.48 -2.39 -0.02 1.41 16 17 C -0.13 -2.36 5.44 30.59 0.17 -2.19 16 18 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 19 C -0.14 -1.54 5.49 30.59 0.17 -1.37 16 20 C 0.10 1.19 3.25 44.91 0.15 1.34 16 21 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 22 N -0.85 -8.94 9.26 -168.66 -1.56 -10.50 16 23 C -0.11 -1.53 4.94 30.59 0.15 -1.38 16 24 C -0.19 -6.52 8.85 22.40 0.20 -6.32 16 25 C -0.09 -3.75 9.69 22.25 0.22 -3.53 16 26 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.00 -0.21 8.08 -2.38 -0.02 -0.23 16 28 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 29 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.40 7.35 8.62 -92.70 -0.80 6.55 16 32 H 0.05 1.11 7.72 -2.39 -0.02 1.09 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.35 2.71 9.04 -89.69 -0.81 1.89 16 39 H 0.35 2.87 8.98 -89.69 -0.81 2.07 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.13 3.77 6.13 -2.91 -0.02 3.76 16 43 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -67.98 343.81 0.43 -67.55 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -1.40 Total: 18.84 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 2.76 Total: -47.79 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.95 Total: -86.20 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.98 0.43 -67.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925824295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.929 kcal (2) G-P(sol) polarization free energy of solvation -67.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds