Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48497 * 109.46839 * 269.99458 * 3 2 1 5 5 H 1.48503 * 109.47165 * 29.99129 * 3 2 1 6 6 H 1.48498 * 109.47231 * 149.99663 * 3 2 1 7 7 C 1.37881 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.38288 * 119.92008 * 89.99868 * 10 9 7 12 12 C 1.38106 * 120.07111 * 180.02562 * 11 10 9 13 13 C 1.38913 * 119.92934 * 0.02562 * 12 11 10 14 14 N 1.39669 * 120.07779 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00117 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47473 * 154.99908 * 15 14 13 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 N 1.46899 * 109.47394 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 21 21 C 1.52999 * 109.46944 * 275.00252 * 15 14 13 22 22 C 1.38913 * 119.84521 * 0.25641 * 13 12 11 23 23 C 1.38100 * 119.92503 * 359.48939 * 22 13 12 24 24 H 0.97000 * 119.99862 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47120 * 60.00034 * 9 7 2 26 26 H 1.09001 * 109.47475 * 299.99743 * 9 7 2 27 27 H 1.07997 * 119.96990 * 0.04643 * 11 10 9 28 28 H 1.08003 * 120.03688 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00392 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47129 * 34.99650 * 15 14 13 31 31 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 32 32 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 33 33 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 34 34 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 36 36 H 1.00897 * 110.99782 * 180.02562 * 19 18 17 37 37 H 1.00900 * 110.99667 * 303.95941 * 19 18 17 38 38 H 1.09002 * 109.47153 * 60.00231 * 20 18 17 39 39 H 1.09001 * 109.47289 * 180.02562 * 20 18 17 40 40 H 1.09000 * 109.47486 * 59.99569 * 21 15 14 41 41 H 1.09002 * 109.46716 * 299.99651 * 21 15 14 42 42 H 1.08000 * 120.04032 * 179.72612 * 22 13 12 43 43 H 1.08008 * 119.96634 * 180.25658 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6785 -4.1689 1.1991 12 6 3.5763 -5.2183 1.2028 13 6 4.0295 -5.7468 0.0007 14 7 4.9380 -6.8077 0.0008 15 6 5.4153 -7.3635 -1.2679 16 6 6.7804 -8.0207 -1.0554 17 6 7.2791 -8.6006 -2.3805 18 6 6.2831 -9.6458 -2.8869 19 7 6.7622 -10.2030 -4.1589 20 6 4.9180 -8.9886 -3.0994 21 6 4.4191 -8.4088 -1.7737 22 6 3.5817 -5.2139 -1.2014 23 6 2.6798 -4.1680 -1.1978 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.3259 -3.7576 2.1334 28 1 3.9263 -5.6270 2.1392 29 1 5.2529 -7.1766 0.8408 30 1 5.5075 -6.5639 -2.0030 31 1 6.6882 -8.8203 -0.3203 32 1 7.4901 -7.2760 -0.6951 33 1 7.3714 -7.8008 -3.1153 34 1 8.2515 -9.0692 -2.2290 35 1 6.1908 -10.4456 -2.1520 36 1 6.1209 -10.8961 -4.5144 37 1 6.9179 -9.4728 -4.8376 38 1 5.0103 -8.1887 -3.8342 39 1 4.2083 -9.7333 -3.4597 40 1 3.4465 -7.9405 -1.9251 41 1 4.3269 -9.2083 -1.0386 42 1 3.9354 -5.6194 -2.1378 43 1 2.3280 -3.7558 -2.1321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925824679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = -2.251442 kcal Electronic energy + Delta-G solvation = -20547.441842 eV Core-core repulsion = 17590.589106 eV Total energy + Delta-G solvation = -2956.852736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.69422 -38.36841 -35.58839 -33.34787 -32.28648 -31.09610 -30.18088 -29.96266 -27.42564 -25.68412 -23.14380 -22.85675 -22.34272 -21.27596 -20.17032 -19.87476 -16.97983 -16.36980 -16.20404 -15.89649 -15.40635 -14.79056 -14.50806 -14.26052 -14.03364 -13.86180 -13.38672 -12.94386 -12.80405 -12.67398 -12.54222 -12.39570 -12.06830 -11.74937 -11.44147 -11.40357 -11.19003 -11.13890 -10.70992 -10.63666 -10.60364 -10.50079 -10.05661 -9.73230 -9.38604 -9.02150 -8.97849 -8.36106 -8.20497 -6.73128 -5.96079 -4.00571 2.15218 2.39884 3.33696 3.39714 3.44385 3.58708 4.19154 4.37059 4.44991 4.49401 4.70027 4.80190 4.93125 4.95841 5.11221 5.19396 5.20750 5.36436 5.44461 5.51149 5.58466 5.60291 5.75069 5.77420 5.84083 5.88122 6.01941 6.09433 6.11926 6.23083 6.35848 6.50257 6.74644 6.77234 6.89366 7.06234 7.33417 7.33466 7.47864 7.64078 7.88925 7.99373 8.00550 8.10033 8.43022 9.05388 9.62791 11.12233 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031998 B = 0.003136 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.850194 B = 8927.748080 C = 9046.603679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.084 4.084 11 C -0.080 4.080 12 C -0.194 4.194 13 C 0.183 3.817 14 N -0.753 5.753 15 C 0.157 3.843 16 C -0.124 4.124 17 C -0.107 4.107 18 C 0.089 3.911 19 N -0.847 5.847 20 C -0.151 4.151 21 C -0.131 4.131 22 C -0.196 4.196 23 C -0.081 4.081 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.392 0.608 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.340 0.660 37 H 0.339 0.661 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.990 -19.666 -4.566 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.086 4.086 11 C -0.099 4.099 12 C -0.216 4.216 13 C 0.084 3.916 14 N -0.385 5.385 15 C 0.051 3.949 16 C -0.163 4.163 17 C -0.146 4.146 18 C -0.023 4.023 19 N -0.375 5.375 20 C -0.191 4.191 21 C -0.171 4.171 22 C -0.218 4.218 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.134 0.866 28 H 0.125 0.875 29 H 0.226 0.774 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.513 -19.836 -4.329 23.849 hybrid contribution -0.401 1.255 -0.102 1.321 sum 12.112 -18.581 -4.431 22.619 Atomic orbital electron populations 1.69962 1.06012 1.26631 1.50978 1.25023 0.94861 0.99177 0.95418 0.86572 0.79868 0.83363 0.78111 1.20672 1.21233 1.19849 1.21138 0.93050 0.90117 1.50294 0.92577 1.18242 0.92519 0.89687 0.97928 1.20449 0.99187 0.97161 0.91813 1.20831 0.96076 0.94720 0.98227 1.20465 1.04144 1.01657 0.95371 1.17601 0.91230 0.88858 0.93935 1.44471 1.50122 1.37236 1.06648 1.20770 0.92188 0.94889 0.87023 1.21761 0.96391 1.00313 0.97820 1.21473 0.98789 0.97752 0.96560 1.21518 0.92195 0.96381 0.92178 1.58964 1.53116 1.18806 1.06626 1.22389 0.97912 1.00488 0.98309 1.21998 0.99902 0.98861 0.96342 1.20526 1.04032 1.01723 0.95528 1.20844 0.96129 0.94827 0.98189 0.92973 0.95746 0.95710 0.86637 0.87475 0.77445 0.90641 0.91546 0.91081 0.91830 0.90918 0.90242 0.84729 0.84828 0.91881 0.92029 0.91265 0.91872 0.87404 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.40 5.10 -29.04 -0.15 1.26 16 10 C -0.08 -1.89 5.07 -104.59 -0.53 -2.42 16 11 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 12 C -0.19 -3.33 9.90 -39.38 -0.39 -3.72 16 13 C 0.18 2.95 6.64 -83.79 -0.56 2.39 16 14 N -0.75 -9.23 5.25 -52.17 -0.27 -9.51 16 15 C 0.16 1.62 2.15 -67.93 -0.15 1.47 16 16 C -0.12 -1.02 5.39 -26.73 -0.14 -1.17 16 17 C -0.11 -0.81 5.46 -26.73 -0.15 -0.96 16 18 C 0.09 0.65 3.25 -67.71 -0.22 0.43 16 19 N -0.85 -5.71 9.25 -4.67 -0.04 -5.75 16 20 C -0.15 -1.19 5.49 -26.70 -0.15 -1.33 16 21 C -0.13 -1.27 5.45 -26.70 -0.15 -1.42 16 22 C -0.20 -3.37 8.86 -39.38 -0.35 -3.72 16 23 C -0.08 -1.64 9.69 -39.62 -0.38 -2.02 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 28 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.39 4.17 8.62 -40.82 -0.35 3.82 16 30 H 0.08 0.88 6.47 -51.93 -0.34 0.54 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.34 1.90 9.04 -39.29 -0.36 1.54 16 37 H 0.34 2.03 8.98 -39.29 -0.35 1.68 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.11 1.63 6.14 -52.49 -0.32 1.30 16 43 H 0.11 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -30.56 343.87 -10.67 -41.23 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.15 Total: 4.72 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -4.10 Total: -26.54 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.42 Total: -41.48 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.56 -10.67 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925824679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.983 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds