Wall clock time and date at job start Mon Mar 30 2020 03:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48507 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47079 * 300.00065 * 3 2 1 6 6 H 1.48501 * 109.47229 * 59.99939 * 3 2 1 7 7 C 1.37874 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00665 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99826 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47425 * 175.71885 * 9 7 2 11 11 C 1.46896 * 111.00251 * 75.56307 * 10 9 7 12 12 C 1.52999 * 109.47267 * 190.00213 * 11 10 9 13 13 C 1.52997 * 109.47476 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47441 * 180.02562 * 13 12 11 15 15 C 1.38675 * 120.41723 * 270.25094 * 14 13 12 16 16 C 1.38628 * 118.42020 * 180.24261 * 15 14 13 17 17 C 1.38225 * 119.15989 * 359.74979 * 16 15 14 18 18 N 1.31862 * 120.76570 * 0.02562 * 17 16 15 19 19 C 1.31883 * 121.72189 * 0.02562 * 18 17 16 20 20 C 1.46903 * 111.00232 * 199.52103 * 10 9 7 21 21 C 1.53003 * 109.46983 * 71.58323 * 20 10 9 22 22 C 1.53001 * 117.50056 * 244.14507 * 21 20 10 23 23 C 1.53001 * 117.49889 * 175.51962 * 21 20 10 24 24 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47039 * 55.71614 * 9 7 2 26 26 H 1.09003 * 109.47027 * 295.71730 * 9 7 2 27 27 H 1.09004 * 109.46838 * 70.00596 * 11 10 9 28 28 H 1.09000 * 109.47428 * 310.00685 * 11 10 9 29 29 H 1.08998 * 109.47263 * 60.00193 * 12 11 10 30 30 H 1.09011 * 109.46894 * 300.00232 * 12 11 10 31 31 H 1.08998 * 109.47061 * 59.99648 * 13 12 11 32 32 H 1.09000 * 109.46980 * 300.00325 * 13 12 11 33 33 H 1.07999 * 120.78942 * 359.96767 * 15 14 13 34 34 H 1.07997 * 120.41935 * 179.72558 * 16 15 14 35 35 H 1.07999 * 119.62167 * 180.02562 * 17 16 15 36 36 H 1.08005 * 119.61249 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47312 * 191.58124 * 20 10 9 38 38 H 1.09005 * 109.46860 * 311.58972 * 20 10 9 39 39 H 1.08998 * 115.54888 * 29.85172 * 21 20 10 40 40 H 1.09002 * 117.49755 * 0.02562 * 22 21 20 41 41 H 1.08995 * 117.49830 * 145.02552 * 22 21 20 42 42 H 1.08997 * 117.49892 * 214.97983 * 23 21 20 43 43 H 1.09003 * 117.49604 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2023 -3.6137 -0.1045 11 6 2.8892 -3.8407 1.1739 12 6 4.0382 -4.8296 0.9671 13 6 4.7532 -5.0666 2.2988 14 6 5.8853 -6.0402 2.0949 15 6 5.6716 -7.4037 2.2303 16 6 6.7435 -8.2617 2.0385 17 6 7.9795 -7.7337 1.7160 18 7 8.1449 -6.4315 1.5910 19 6 7.1483 -5.5858 1.7671 20 6 1.5320 -4.8366 -0.5664 21 6 1.1667 -4.6905 -2.0450 22 6 -0.3193 -4.6916 -2.4091 23 6 0.5513 -5.9044 -2.7439 24 1 -0.4850 0.8401 0.0004 25 1 0.5678 -2.5242 -0.8494 26 1 0.6836 -2.5910 0.9256 27 1 2.1840 -4.2493 1.8977 28 1 3.2855 -2.8960 1.5463 29 1 4.7434 -4.4211 0.2433 30 1 3.6417 -5.7744 0.5948 31 1 4.0478 -5.4753 3.0222 32 1 5.1495 -4.1220 2.6715 33 1 4.6945 -7.7877 2.4834 34 1 6.6145 -9.3291 2.1403 35 1 8.8196 -8.3953 1.5646 36 1 7.3222 -4.5256 1.6566 37 1 2.2011 -5.6876 -0.4399 38 1 0.6257 -4.9968 0.0176 39 1 1.8285 -4.0537 -2.6321 40 1 -1.0368 -4.7960 -1.5951 41 1 -0.6354 -4.0555 -3.2357 42 1 0.8079 -6.0661 -3.7909 43 1 0.4063 -6.8070 -2.1502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929774778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:49 Heat of formation + Delta-G solvation = 48.304806 kcal Electronic energy + Delta-G solvation = -20497.084957 eV Core-core repulsion = 17542.424504 eV Total energy + Delta-G solvation = -2954.660453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24150 -37.94244 -35.98847 -34.34169 -32.53879 -32.08916 -30.29310 -27.63293 -26.42976 -24.35986 -23.63410 -22.46345 -21.92181 -21.01935 -20.58081 -19.47711 -17.17381 -16.50950 -16.35905 -15.49115 -15.39483 -14.64076 -14.51823 -14.18499 -14.12234 -13.73446 -13.45780 -13.16622 -13.12908 -12.61271 -12.24345 -11.99878 -11.73535 -11.49130 -11.22825 -11.17473 -10.95322 -10.76516 -10.64937 -10.44330 -10.26566 -9.94321 -9.83924 -9.82277 -9.49843 -9.31118 -9.10506 -8.96591 -8.38912 -7.23372 -5.99083 -3.99782 1.02769 1.19102 3.32372 3.40122 3.44897 3.72293 4.22098 4.35907 4.45070 4.69141 4.70662 4.83747 4.90991 4.96255 5.22005 5.25706 5.34942 5.36877 5.41899 5.47248 5.58357 5.73098 5.80527 5.88385 5.90933 5.96032 5.99295 6.05633 6.09122 6.21036 6.26360 6.28962 6.35758 6.47921 6.62203 6.63542 6.71423 6.82975 7.31510 7.39658 7.85644 7.88983 8.16470 8.26029 8.58625 9.08370 9.64148 11.11486 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004374 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.676904 B = 6400.616629 C = 7997.751245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.534 5.534 11 C 0.064 3.936 12 C -0.109 4.109 13 C -0.079 4.079 14 C -0.120 4.120 15 C -0.077 4.077 16 C -0.173 4.173 17 C 0.084 3.916 18 N -0.485 5.485 19 C 0.100 3.900 20 C 0.084 3.916 21 C -0.128 4.128 22 C -0.178 4.178 23 C -0.191 4.191 24 H 0.259 0.741 25 H 0.039 0.961 26 H -0.014 1.014 27 H 0.017 0.983 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -15.786 2.833 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.258 5.258 11 C -0.064 4.064 12 C -0.147 4.147 13 C -0.117 4.117 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.192 4.192 17 C -0.073 4.073 18 N -0.193 5.193 19 C -0.057 4.057 20 C -0.045 4.045 21 C -0.147 4.147 22 C -0.215 4.215 23 C -0.228 4.228 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.003 0.997 27 H 0.036 0.964 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.184 -15.199 2.271 17.903 hybrid contribution -1.211 0.349 0.765 1.475 sum 7.973 -14.850 3.037 17.126 Atomic orbital electron populations 1.69968 1.06023 1.26500 1.51443 1.24973 0.94821 0.99192 0.95650 0.86500 0.80157 0.83670 0.77446 1.19656 1.21104 1.21202 1.21216 0.93524 0.89957 1.49359 0.91926 1.19764 0.90213 0.87295 0.95992 1.62086 1.31629 1.04637 1.27425 1.21968 0.94418 0.99046 0.90978 1.21644 0.97957 0.99498 0.95614 1.20595 0.94508 0.97702 0.98942 1.21033 0.96746 0.95137 0.99300 1.21527 0.99255 0.92877 0.96640 1.22118 0.94275 1.00980 1.01863 1.22710 0.96597 0.91767 0.96196 1.67687 1.34339 1.04044 1.13235 1.22759 0.88112 0.99870 0.94928 1.21634 0.96409 0.93773 0.92659 1.22259 0.95734 0.99861 0.96811 1.22954 0.94466 1.00716 1.03376 1.22933 1.06273 0.92855 1.00746 0.93103 0.94303 0.99651 0.96448 0.89923 0.91072 0.92470 0.90971 0.90269 0.84999 0.85055 0.83121 0.82652 0.91784 0.96001 0.87089 0.89285 0.89180 0.89387 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.50 -13.93 8.60 -34.44 -0.30 -14.23 16 8 H 0.06 1.73 7.66 -52.49 -0.40 1.33 16 9 C 0.19 4.92 4.59 -4.98 -0.02 4.90 16 10 N -0.53 -11.12 4.38 -236.07 -1.04 -12.16 16 11 C 0.06 1.16 4.78 -3.83 -0.02 1.14 16 12 C -0.11 -1.55 5.16 -26.73 -0.14 -1.69 16 13 C -0.08 -0.92 5.37 -27.88 -0.15 -1.07 16 14 C -0.12 -1.38 5.15 -104.48 -0.54 -1.92 16 15 C -0.08 -0.79 9.86 -39.28 -0.39 -1.17 16 16 C -0.17 -1.60 10.11 -39.44 -0.40 -2.00 16 17 C 0.08 0.88 11.18 -17.54 -0.20 0.68 16 18 N -0.48 -6.21 10.36 -13.25 -0.14 -6.35 16 19 C 0.10 1.23 10.86 -17.55 -0.19 1.04 16 20 C 0.08 1.50 5.11 -3.82 -0.02 1.48 16 21 C -0.13 -2.21 4.96 -90.62 -0.45 -2.66 16 22 C -0.18 -2.89 9.97 -26.73 -0.27 -3.15 16 23 C -0.19 -2.66 10.25 -26.73 -0.27 -2.94 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 25 H 0.04 1.07 6.93 -51.93 -0.36 0.71 16 26 H -0.01 -0.39 8.00 -51.93 -0.42 -0.81 16 27 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 28 H 0.08 1.63 7.32 -51.93 -0.38 1.25 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.79 6.29 -51.92 -0.33 0.46 16 31 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.06 1.01 5.95 -51.93 -0.31 0.71 16 38 H 0.02 0.40 7.79 -51.93 -0.40 0.00 16 39 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 40 H 0.09 1.45 8.03 -51.93 -0.42 1.04 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -30.62 353.85 -10.78 -41.40 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.22 Total: 1.24 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.44 Total: -20.16 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.44 Total: -44.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.62 -10.78 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.709 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds