Wall clock time and date at job start Mon Mar 30 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48507 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47079 * 300.00065 * 3 2 1 6 6 H 1.48501 * 109.47229 * 59.99939 * 3 2 1 7 7 C 1.37874 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00665 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99826 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47425 * 175.71885 * 9 7 2 11 11 C 1.46896 * 111.00251 * 75.56307 * 10 9 7 12 12 C 1.52999 * 109.47267 * 190.00213 * 11 10 9 13 13 C 1.52997 * 109.47476 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47441 * 180.02562 * 13 12 11 15 15 C 1.38675 * 120.41723 * 270.25094 * 14 13 12 16 16 C 1.38628 * 118.42020 * 180.24261 * 15 14 13 17 17 C 1.38225 * 119.15989 * 359.74979 * 16 15 14 18 18 N 1.31862 * 120.76570 * 0.02562 * 17 16 15 19 19 C 1.31883 * 121.72189 * 0.02562 * 18 17 16 20 20 C 1.46903 * 111.00232 * 199.52103 * 10 9 7 21 21 C 1.53003 * 109.46983 * 71.58323 * 20 10 9 22 22 C 1.53001 * 117.50056 * 244.14507 * 21 20 10 23 23 C 1.53001 * 117.49889 * 175.51962 * 21 20 10 24 24 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47039 * 55.71614 * 9 7 2 26 26 H 1.09003 * 109.47027 * 295.71730 * 9 7 2 27 27 H 1.09004 * 109.46838 * 70.00596 * 11 10 9 28 28 H 1.09000 * 109.47428 * 310.00685 * 11 10 9 29 29 H 1.08998 * 109.47263 * 60.00193 * 12 11 10 30 30 H 1.09011 * 109.46894 * 300.00232 * 12 11 10 31 31 H 1.08998 * 109.47061 * 59.99648 * 13 12 11 32 32 H 1.09000 * 109.46980 * 300.00325 * 13 12 11 33 33 H 1.07999 * 120.78942 * 359.96767 * 15 14 13 34 34 H 1.07997 * 120.41935 * 179.72558 * 16 15 14 35 35 H 1.07999 * 119.62167 * 180.02562 * 17 16 15 36 36 H 1.08005 * 119.61249 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47312 * 191.58124 * 20 10 9 38 38 H 1.09005 * 109.46860 * 311.58972 * 20 10 9 39 39 H 1.08998 * 115.54888 * 29.85172 * 21 20 10 40 40 H 1.09002 * 117.49755 * 0.02562 * 22 21 20 41 41 H 1.08995 * 117.49830 * 145.02552 * 22 21 20 42 42 H 1.08997 * 117.49892 * 214.97983 * 23 21 20 43 43 H 1.09003 * 117.49604 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2023 -3.6137 -0.1045 11 6 2.8892 -3.8407 1.1739 12 6 4.0382 -4.8296 0.9671 13 6 4.7532 -5.0666 2.2988 14 6 5.8853 -6.0402 2.0949 15 6 5.6716 -7.4037 2.2303 16 6 6.7435 -8.2617 2.0385 17 6 7.9795 -7.7337 1.7160 18 7 8.1449 -6.4315 1.5910 19 6 7.1483 -5.5858 1.7671 20 6 1.5320 -4.8366 -0.5664 21 6 1.1667 -4.6905 -2.0450 22 6 -0.3193 -4.6916 -2.4091 23 6 0.5513 -5.9044 -2.7439 24 1 -0.4850 0.8401 0.0004 25 1 0.5678 -2.5242 -0.8494 26 1 0.6836 -2.5910 0.9256 27 1 2.1840 -4.2493 1.8977 28 1 3.2855 -2.8960 1.5463 29 1 4.7434 -4.4211 0.2433 30 1 3.6417 -5.7744 0.5948 31 1 4.0478 -5.4753 3.0222 32 1 5.1495 -4.1220 2.6715 33 1 4.6945 -7.7877 2.4834 34 1 6.6145 -9.3291 2.1403 35 1 8.8196 -8.3953 1.5646 36 1 7.3222 -4.5256 1.6566 37 1 2.2011 -5.6876 -0.4399 38 1 0.6257 -4.9968 0.0176 39 1 1.8285 -4.0537 -2.6321 40 1 -1.0368 -4.7960 -1.5951 41 1 -0.6354 -4.0555 -3.2357 42 1 0.8079 -6.0661 -3.7909 43 1 0.4063 -6.8070 -2.1502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929774778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:48 Heat of formation + Delta-G solvation = 31.363432 kcal Electronic energy + Delta-G solvation = -20497.819590 eV Core-core repulsion = 17542.424504 eV Total energy + Delta-G solvation = -2955.395086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05964 -39.41693 -37.30006 -35.62852 -34.48042 -32.95071 -31.44249 -29.50752 -27.68345 -25.97844 -24.43685 -23.87083 -23.15678 -22.31940 -21.84892 -20.97516 -18.51456 -17.93008 -17.37609 -16.96790 -16.59312 -16.31403 -15.70988 -15.58301 -15.31067 -14.91723 -14.68493 -14.43485 -14.13536 -13.89505 -13.85642 -13.42583 -13.15139 -12.87072 -12.64247 -12.60580 -12.43763 -12.34633 -12.21695 -12.11194 -11.69799 -11.50156 -11.37083 -11.05289 -10.66071 -10.63477 -10.53890 -10.33053 -9.81847 -8.96549 -8.16757 -6.25971 0.22650 0.39961 1.40359 1.41541 1.54680 2.41620 2.88531 2.95204 3.14759 3.30379 3.59754 3.83862 3.93237 3.98149 4.06055 4.12350 4.15255 4.21093 4.27949 4.45581 4.46728 4.55832 4.61948 4.67059 4.78424 4.82316 4.86917 4.87928 4.95975 5.02274 5.04678 5.17722 5.22871 5.25490 5.27555 5.36238 5.43400 5.44932 5.51230 5.70682 5.85696 6.13073 6.46224 6.70378 6.90599 7.07977 7.43295 8.93726 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004374 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.676904 B = 6400.616629 C = 7997.751245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.211 3.789 10 N -0.542 5.542 11 C 0.065 3.935 12 C -0.092 4.092 13 C -0.070 4.070 14 C -0.129 4.129 15 C -0.081 4.081 16 C -0.166 4.166 17 C 0.075 3.925 18 N -0.515 5.515 19 C 0.081 3.919 20 C 0.088 3.912 21 C -0.155 4.155 22 C -0.194 4.194 23 C -0.149 4.149 24 H 0.262 0.738 25 H 0.013 0.987 26 H -0.045 1.045 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.154 0.846 37 H 0.091 0.909 38 H 0.015 0.985 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 -17.842 2.879 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.085 3.915 10 N -0.266 5.266 11 C -0.063 4.063 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.131 4.131 15 C -0.107 4.107 16 C -0.185 4.185 17 C -0.082 4.082 18 N -0.224 5.224 19 C -0.075 4.075 20 C -0.040 4.040 21 C -0.174 4.174 22 C -0.231 4.231 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.031 0.969 26 H -0.028 1.028 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.172 0.828 37 H 0.109 0.891 38 H 0.033 0.967 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.227 -17.270 2.319 20.205 hybrid contribution -1.529 0.903 0.752 1.928 sum 8.698 -16.367 3.071 18.788 Atomic orbital electron populations 1.70090 1.07617 1.27580 1.52253 1.25846 0.95672 1.02921 0.95095 0.85420 0.79062 0.79018 0.77643 1.18819 1.20606 1.20426 1.21512 0.93505 0.91249 1.49238 0.92253 1.19355 0.90181 0.88806 0.93177 1.62022 1.30625 1.04978 1.29009 1.21993 0.95432 0.99124 0.89766 1.21452 0.96150 0.98415 0.96951 1.20469 0.94739 0.98079 0.97541 1.20960 0.96095 0.95821 1.00248 1.21859 1.00593 0.92327 0.95903 1.22475 0.93315 1.02571 1.00157 1.23242 0.98166 0.91299 0.95496 1.67677 1.34921 1.05355 1.14410 1.22848 0.88715 1.00113 0.95870 1.21690 0.96425 0.93050 0.92858 1.22195 0.95993 1.02699 0.96521 1.22979 0.93860 1.02921 1.03338 1.23024 1.01942 0.91938 1.01702 0.92869 0.96870 1.02767 0.96120 0.92273 0.92396 0.91353 0.89656 0.90518 0.82939 0.81776 0.80674 0.82824 0.89068 0.96726 0.89261 0.89907 0.89556 0.87384 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -29.56 8.60 25.60 0.22 -29.34 16 8 H 0.06 3.36 7.66 -2.91 -0.02 3.34 16 9 C 0.21 11.29 4.59 85.56 0.39 11.68 16 10 N -0.54 -23.15 4.38 -900.78 -3.95 -27.10 16 11 C 0.06 2.37 4.78 86.30 0.41 2.78 16 12 C -0.09 -2.53 5.16 30.59 0.16 -2.38 16 13 C -0.07 -1.55 5.37 29.85 0.16 -1.39 16 14 C -0.13 -2.78 5.15 -19.77 -0.10 -2.88 16 15 C -0.08 -1.42 9.86 22.47 0.22 -1.20 16 16 C -0.17 -2.54 10.11 22.36 0.23 -2.31 16 17 C 0.07 1.39 11.18 84.69 0.95 2.33 16 18 N -0.51 -12.73 10.36 -195.84 -2.03 -14.75 16 19 C 0.08 1.94 10.86 84.67 0.92 2.86 16 20 C 0.09 3.11 5.11 86.30 0.44 3.55 16 21 C -0.16 -5.34 4.96 -10.79 -0.05 -5.39 16 22 C -0.19 -6.28 9.97 30.60 0.31 -5.97 16 23 C -0.15 -3.80 10.25 30.60 0.31 -3.48 16 24 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 25 H 0.01 0.76 6.93 -2.39 -0.02 0.75 16 26 H -0.05 -2.64 8.00 -2.39 -0.02 -2.66 16 27 H 0.02 0.74 8.12 -2.38 -0.02 0.72 16 28 H 0.06 2.41 7.32 -2.39 -0.02 2.39 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.73 6.29 -2.38 -0.01 1.72 16 31 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.09 2.70 5.95 -2.39 -0.01 2.69 16 38 H 0.01 0.54 7.79 -2.38 -0.02 0.52 16 39 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.08 2.75 8.03 -2.39 -0.02 2.73 16 41 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -68.05 353.85 2.32 -65.73 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.96 Total: 16.22 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 5.02 Total: -30.55 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -5.69 Total: -98.29 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.05 2.32 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.096 kcal (2) G-P(sol) polarization free energy of solvation -68.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds