Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.81262 * 2 1 4 4 C 1.53532 * 109.83261 * 120.92506 * 2 1 3 5 5 N 1.46856 * 109.89979 * 169.43657 * 4 2 1 6 6 C 1.46904 * 110.99596 * 162.47666 * 5 4 2 7 7 C 1.52996 * 109.46858 * 190.90490 * 6 5 4 8 8 H 1.09000 * 109.47753 * 305.00128 * 7 6 5 9 9 C 1.47204 * 109.47042 * 64.99895 * 7 6 5 10 10 N 5.30524 * 156.14494 * 56.09855 * 2 1 3 11 11 C 1.52996 * 109.47153 * 184.99851 * 7 6 5 12 12 C 1.50702 * 109.47159 * 175.00123 * 11 7 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 7 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 7 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.47328 * 111.70176 * 286.93856 * 5 4 2 21 21 C 1.50866 * 108.03448 * 51.96180 * 20 5 4 22 22 C 1.34368 * 129.06953 * 163.58711 * 21 20 5 23 23 N 1.35270 * 107.60622 * 180.17841 * 22 21 20 24 24 H 0.96997 * 125.99520 * 179.97438 * 23 22 21 25 25 N 1.40387 * 108.00923 * 359.95534 * 23 22 21 26 26 C 1.29852 * 108.08804 * 359.94638 * 25 23 22 27 27 H 1.08999 * 109.47145 * 180.86588 * 1 2 3 28 28 H 1.08997 * 109.47246 * 300.86792 * 1 2 3 29 29 H 1.09007 * 109.47040 * 60.86860 * 1 2 3 30 30 H 1.09000 * 109.38801 * 49.30601 * 4 2 1 31 31 H 1.09004 * 109.39689 * 289.57239 * 4 2 1 32 32 H 1.08997 * 109.46933 * 70.90651 * 6 5 4 33 33 H 1.08996 * 109.47325 * 310.90793 * 6 5 4 34 34 H 1.09004 * 109.47066 * 55.00326 * 11 7 6 35 35 H 1.08994 * 109.47405 * 295.00156 * 11 7 6 36 36 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.74556 * 171.59493 * 20 5 4 38 38 H 1.08995 * 109.75110 * 292.32987 * 20 5 4 39 39 H 1.08003 * 126.19349 * 0.17523 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0509 -0.7422 1.2389 5 7 3.4974 -0.9644 1.1171 6 6 4.0927 -1.2833 2.4217 7 6 5.6180 -1.2400 2.3106 8 1 5.9431 -1.9048 1.5103 9 6 6.0493 0.1353 2.0115 10 7 6.3820 1.1967 1.7808 11 6 6.2388 -1.6928 3.6336 12 6 7.7367 -1.7679 3.4859 13 1 8.1996 -1.5173 2.5429 14 6 8.5167 -2.1506 4.5566 15 7 9.8243 -2.2109 4.4293 16 14 7.7160 -2.5835 6.1879 17 1 7.4030 -4.0348 6.2159 18 1 8.6465 -2.2562 7.2981 19 1 6.4624 -1.8034 6.3465 20 6 3.8065 -2.0097 0.1260 21 6 3.0934 -1.6622 -1.1572 22 6 3.3030 -2.1349 -2.3974 23 7 2.4212 -1.5251 -3.2222 24 1 2.3406 -1.6698 -4.1779 25 7 1.6428 -0.6464 -2.4522 26 6 2.0422 -0.7288 -1.2194 27 1 -0.3633 -1.0275 0.0155 28 1 -0.3633 0.5272 0.8821 29 1 -0.3633 0.5003 -0.8977 30 1 1.5430 -1.7028 1.3254 31 1 1.8497 -0.1463 2.1292 32 1 3.7790 -2.2806 2.7301 33 1 3.7613 -0.5536 3.1605 34 1 5.8502 -2.6759 3.8996 35 1 5.9864 -0.9782 4.4169 36 1 10.3729 -2.4804 5.1825 37 1 4.8819 -2.0455 -0.0483 38 1 3.4593 -2.9766 0.4900 39 1 4.0418 -2.8689 -2.6837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931456753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = 97.616081 kcal Electronic energy + Delta-G solvation = -20765.467572 eV Core-core repulsion = 17709.405073 eV Total energy + Delta-G solvation = -3056.062499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.53551 -38.38440 -36.21938 -34.40123 -33.39525 -31.93740 -31.00246 -30.26387 -27.53682 -26.53700 -24.76392 -22.91791 -21.67122 -21.42029 -20.60214 -18.81477 -17.92445 -16.85694 -16.59690 -15.78066 -15.36697 -14.90456 -14.51179 -14.23376 -14.07612 -13.50181 -13.22676 -13.21013 -12.94397 -12.66037 -12.41503 -12.10876 -11.99824 -11.94365 -11.58906 -11.46553 -11.28142 -11.16915 -11.05201 -10.73447 -10.47874 -10.30497 -9.89769 -9.70917 -9.47976 -9.30391 -8.61127 -8.59989 -8.12724 -6.09645 -4.10126 1.84051 2.69230 2.76521 3.26350 3.35625 3.36348 3.72239 3.81487 3.89963 4.39170 4.39482 4.62851 4.80846 4.90923 5.04559 5.18096 5.25404 5.26572 5.41099 5.49203 5.53123 5.55281 5.58557 5.70215 5.77163 5.82767 5.91520 5.98930 6.02329 6.13073 6.24293 6.33443 6.55690 6.93441 7.09182 7.13429 7.16331 7.22092 7.62521 7.65308 8.42048 8.60201 8.94377 9.50332 11.03524 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.004173 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.206672 B = 6707.730259 C = 7027.614118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.096 0.904 4 C 0.065 3.935 5 N -0.543 5.543 6 C 0.062 3.938 7 C 0.020 3.980 8 H 0.105 0.895 9 C 0.254 3.746 10 N -0.472 5.472 11 C -0.006 4.006 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.131 3.869 21 C -0.232 4.232 22 C 0.064 3.936 23 N -0.491 5.491 24 H 0.437 0.563 25 N -0.290 5.290 26 C 0.098 3.902 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -2.949 -10.014 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.114 0.886 4 C -0.064 4.064 5 N -0.266 5.266 6 C -0.067 4.067 7 C -0.002 4.002 8 H 0.123 0.877 9 C -0.064 4.064 10 N -0.148 5.148 11 C -0.045 4.045 12 C -0.565 4.565 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.188 1.188 20 C 0.003 3.997 21 C -0.244 4.244 22 C -0.082 4.082 23 N -0.199 5.199 24 H 0.281 0.719 25 N -0.112 5.112 26 C -0.071 4.071 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.887 -0.414 -11.233 21.978 hybrid contribution 0.064 -1.957 1.134 2.263 sum -18.823 -2.371 -10.099 21.492 Atomic orbital electron populations 1.21732 0.93604 1.02115 1.02345 1.19835 0.95184 0.99086 0.88574 0.88632 1.22140 0.87693 0.99253 0.97290 1.61765 1.11508 1.44956 1.08414 1.22279 0.93652 1.00901 0.89836 1.18979 0.92848 0.85871 1.02467 0.87727 1.28668 0.91614 0.94345 0.91734 1.80996 1.10224 1.13201 1.10403 1.19645 0.97367 0.96754 0.90693 1.21032 0.88918 1.46601 0.99923 0.90793 1.24990 0.94665 0.94760 0.98679 1.69906 1.04177 1.47699 1.31781 0.86826 0.79803 0.79152 0.83830 1.20077 1.21356 1.18801 1.20526 0.99790 0.91956 0.87468 1.20108 1.03497 1.05212 0.95589 1.21916 0.96108 0.99552 0.90587 1.46336 1.28881 1.34447 1.10261 0.71926 1.76860 1.17599 1.13178 1.03520 1.22229 0.95112 0.96749 0.93051 0.92681 0.91910 0.91835 0.94126 0.89860 0.92666 0.89960 0.94937 0.95627 0.92592 0.89163 0.93510 0.80572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 2 C -0.01 -0.07 3.31 -91.34 -0.30 -0.37 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.06 0.70 4.83 -3.57 -0.02 0.68 16 5 N -0.54 -7.01 4.28 -235.30 -1.01 -8.02 16 6 C 0.06 0.83 4.32 -3.82 -0.02 0.81 16 7 C 0.02 0.35 2.13 -93.41 -0.20 0.15 16 8 H 0.10 1.72 6.42 -51.93 -0.33 1.39 16 9 C 0.25 5.24 13.67 -20.76 -0.28 4.95 16 10 N -0.47 -10.80 18.54 42.15 0.78 -10.02 16 11 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 12 C -0.53 -14.00 9.15 -34.44 -0.32 -14.32 16 13 H 0.07 2.17 7.84 -52.49 -0.41 1.75 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 16 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 20 C 0.13 1.57 5.47 -4.66 -0.03 1.55 16 21 C -0.23 -2.85 5.97 -104.97 -0.63 -3.47 16 22 C 0.06 0.64 11.96 -17.40 -0.21 0.43 16 23 N -0.49 -4.92 7.38 30.33 0.22 -4.70 16 24 H 0.44 2.86 8.96 -182.38 -1.63 1.22 16 25 N -0.29 -3.78 12.62 33.77 0.43 -3.35 16 26 C 0.10 1.27 6.51 -82.34 -0.54 0.74 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.41 8.03 -51.93 -0.42 -0.01 16 31 H 0.08 0.81 7.76 -51.93 -0.40 0.40 16 32 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 33 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 34 H 0.03 0.62 7.58 -51.93 -0.39 0.23 16 35 H 0.03 0.55 7.19 -51.93 -0.37 0.17 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.09 1.12 6.58 -51.93 -0.34 0.78 16 38 H 0.05 0.51 8.12 -51.93 -0.42 0.08 16 39 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -33.75 323.79 -7.82 -41.56 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.84 Total: -1.82 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.38 Total: -8.11 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 1.20 Total: -52.21 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.75 -7.82 -41.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931456753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.179 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds