Wall clock time and date at job start Mon Mar 30 2020 03:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99749 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 120.00236 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47160 * 89.99730 * 8 6 4 10 10 H 1.48503 * 109.47061 * 209.99752 * 8 6 4 11 11 H 1.48500 * 109.46598 * 329.99398 * 8 6 4 12 12 C 1.39674 * 120.00040 * 179.97438 * 2 1 3 13 13 C 1.38916 * 120.07159 * 179.72423 * 12 2 1 14 14 C 1.38110 * 119.91982 * 179.77154 * 13 12 2 15 15 C 1.38286 * 120.07631 * 0.50493 * 14 13 12 16 16 C 1.50693 * 119.92645 * 179.72457 * 15 14 13 17 17 N 1.46904 * 109.47328 * 270.02358 * 16 15 14 18 18 C 1.46897 * 111.00286 * 179.97438 * 17 16 15 19 19 C 1.52999 * 115.54746 * 34.41685 * 18 17 16 20 20 C 1.52997 * 117.49832 * 248.74920 * 18 17 16 21 21 C 1.52996 * 117.49865 * 180.08648 * 18 17 16 22 22 C 1.38293 * 120.14766 * 359.74853 * 15 14 13 23 23 C 1.38102 * 120.07322 * 359.97438 * 22 15 14 24 24 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 25 25 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 26 26 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 28 28 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 29 29 H 0.97001 * 119.99269 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.04002 * 0.02562 * 13 12 2 31 31 H 1.07995 * 119.95873 * 180.25408 * 14 13 12 32 32 H 1.08999 * 109.46953 * 30.02116 * 16 15 14 33 33 H 1.09000 * 109.47248 * 150.02627 * 16 15 14 34 34 H 1.00895 * 110.99748 * 303.95466 * 17 16 15 35 35 H 1.09004 * 109.47162 * 85.58324 * 19 18 17 36 36 H 1.08998 * 109.46998 * 205.58295 * 19 18 17 37 37 H 1.08997 * 109.47502 * 325.58456 * 19 18 17 38 38 H 1.08997 * 117.50385 * 359.97438 * 20 18 17 39 39 H 1.09001 * 117.49562 * 145.02153 * 20 18 17 40 40 H 1.08998 * 117.49897 * 214.97520 * 21 18 17 41 41 H 1.08999 * 117.49963 * 0.02562 * 21 18 17 42 42 H 1.08001 * 119.95958 * 179.97438 * 22 15 14 43 43 H 1.08005 * 120.03290 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3457 3.2572 -2.9128 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7479 5.3560 -0.6646 11 1 2.8270 3.7593 0.9113 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2113 -0.0052 14 6 4.2400 -2.4092 0.0001 15 6 3.5470 -3.6059 0.0006 16 6 4.3005 -4.9110 0.0002 17 7 4.5449 -5.3349 -1.3850 18 6 5.2796 -6.6063 -1.4247 19 6 4.9498 -7.5941 -0.3038 20 6 6.7212 -6.5734 -1.9359 21 6 5.6159 -7.1852 -2.8003 22 6 2.1641 -3.6077 0.0011 23 6 1.4705 -2.4135 0.0015 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6084 2.0285 0.5138 28 1 3.1500 1.1384 0.5139 29 1 3.8225 4.0831 -3.0900 30 1 4.0943 -0.2771 -0.0098 31 1 5.3199 -2.4113 -0.0003 32 1 5.2530 -4.7807 0.5137 33 1 3.7115 -5.6707 0.5140 34 1 3.6803 -5.4002 -1.9010 35 1 4.0796 -8.1868 -0.5862 36 1 5.8013 -8.2545 -0.1394 37 1 4.7336 -7.0451 0.6125 38 1 7.1244 -5.6085 -2.2432 39 1 7.4347 -7.2559 -1.4740 40 1 5.6028 -8.2699 -2.9068 41 1 5.2924 -6.6224 -3.6760 42 1 1.6259 -4.5441 0.0011 43 1 0.3904 -2.4156 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116094678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:23 Heat of formation + Delta-G solvation = 63.288067 kcal Electronic energy + Delta-G solvation = -20571.521299 eV Core-core repulsion = 17617.510569 eV Total energy + Delta-G solvation = -2954.010730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.24546 -38.39063 -36.01937 -33.44864 -32.51017 -30.54459 -29.51422 -28.44897 -28.26447 -25.77813 -23.95007 -22.52444 -22.03229 -21.41558 -19.59605 -19.45047 -16.94550 -16.79648 -16.12821 -15.51011 -15.21290 -14.57873 -14.33504 -14.17096 -13.67193 -13.54505 -13.24666 -13.18707 -12.96573 -12.81752 -12.48021 -12.38468 -11.83221 -11.69970 -11.59263 -11.51971 -11.50155 -11.03146 -10.76133 -10.62070 -10.44314 -10.24505 -10.08695 -9.93871 -9.57619 -8.90356 -8.64686 -8.35929 -8.29455 -6.42019 -6.13356 -4.13290 2.06579 2.15911 3.22397 3.29941 3.30592 3.65746 4.00221 4.07689 4.33062 4.58089 4.64276 4.85317 4.91569 5.16535 5.21071 5.28885 5.45195 5.50068 5.53553 5.56700 5.57773 5.61563 5.71949 5.83385 5.84766 5.95499 5.96243 6.05611 6.12951 6.25538 6.31497 6.35881 6.54088 6.73320 6.75081 6.97015 7.05645 7.10679 7.27769 7.43016 7.51993 7.54960 8.04286 8.33316 8.52008 8.94414 9.46374 10.99802 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.003796 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.655905 B = 7374.356512 C = 8060.021633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.612 5.612 3 C 0.221 3.779 4 C -0.534 4.534 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.242 3.758 13 C -0.188 4.188 14 C -0.050 4.050 15 C -0.171 4.171 16 C 0.116 3.884 17 N -0.648 5.648 18 C 0.032 3.968 19 C -0.146 4.146 20 C -0.162 4.162 21 C -0.174 4.174 22 C -0.068 4.068 23 C -0.218 4.218 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.343 0.657 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -18.448 6.664 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.318 5.318 3 C 0.100 3.900 4 C -0.573 4.573 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.135 3.865 13 C -0.211 4.211 14 C -0.069 4.069 15 C -0.174 4.174 16 C -0.012 4.012 17 N -0.278 5.278 18 C -0.060 4.060 19 C -0.205 4.205 20 C -0.200 4.200 21 C -0.212 4.212 22 C -0.087 4.087 23 C -0.241 4.241 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.163 0.837 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.367 -17.673 6.485 18.875 hybrid contribution -0.360 0.194 0.637 0.757 sum 1.008 -17.479 7.122 18.901 Atomic orbital electron populations 1.21477 0.81022 1.01012 1.00806 1.46713 1.04412 1.03975 1.76654 1.19675 0.91912 0.80615 0.97837 1.21474 1.36921 1.07254 0.91637 0.90575 1.24904 0.95413 0.97248 0.95473 1.69909 1.41221 1.23488 1.18642 0.86911 0.79944 0.80196 0.83042 1.19870 1.20955 1.19057 1.17910 0.91466 0.85820 0.91274 1.20846 0.92593 0.98748 1.08873 1.20651 0.98829 0.91293 0.96144 1.19227 0.93121 0.93960 1.11093 1.20716 0.98679 0.93035 0.88767 1.60436 1.26673 1.26437 1.14286 1.21517 0.98121 0.91053 0.95277 1.21851 1.01717 0.98434 0.98495 1.23179 0.91106 1.02563 1.03122 1.23121 1.03937 0.99950 0.94192 1.20522 0.93303 0.96546 0.98323 1.20513 0.99018 0.91288 1.13297 0.93728 0.92617 0.92084 0.95472 0.95508 0.92515 0.85386 0.86930 0.90947 0.94714 0.83712 0.92407 0.92052 0.91159 0.88199 0.89214 0.89016 0.88363 0.87607 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.23 59.85 0.61 2.34 16 2 N -0.61 -12.82 2.99 -180.99 -0.54 -13.36 16 3 C 0.22 5.22 4.02 -5.19 -0.02 5.20 16 4 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 5 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -27.17 13.96 55.43 0.77 -26.39 16 8 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 12 C 0.24 4.83 6.55 -83.79 -0.55 4.28 16 13 C -0.19 -3.77 9.21 -39.38 -0.36 -4.13 16 14 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 15 C -0.17 -2.62 5.39 -104.59 -0.56 -3.19 16 16 C 0.12 1.46 4.82 -4.98 -0.02 1.43 16 17 N -0.65 -8.10 6.69 -101.23 -0.68 -8.78 16 18 C 0.03 0.34 2.80 -131.61 -0.37 -0.03 16 19 C -0.15 -1.29 9.48 37.16 0.35 -0.94 16 20 C -0.16 -1.63 10.11 -26.69 -0.27 -1.90 16 21 C -0.17 -1.66 10.18 -26.69 -0.27 -1.93 16 22 C -0.07 -1.03 9.69 -39.61 -0.38 -1.41 16 23 C -0.22 -3.72 9.21 -39.38 -0.36 -4.09 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.80 6.20 -51.93 -0.32 0.48 16 26 H 0.06 0.97 7.89 -51.93 -0.41 0.56 16 27 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 28 H 0.03 0.63 5.64 -51.93 -0.29 0.34 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.13 2.76 6.15 -52.49 -0.32 2.44 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 34 H 0.34 4.25 8.81 -39.29 -0.35 3.91 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 37 H 0.07 0.64 5.61 -51.93 -0.29 0.34 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.74 6.14 -52.48 -0.32 1.42 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -30.27 345.55 -9.73 -40.00 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.79 Total: 6.17 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.04 Total: -18.98 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.45 Total: -48.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.27 -9.73 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116094678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.289 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds