Wall clock time and date at job start Mon Mar 30 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99749 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 120.00236 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47160 * 89.99730 * 8 6 4 10 10 H 1.48503 * 109.47061 * 209.99752 * 8 6 4 11 11 H 1.48500 * 109.46598 * 329.99398 * 8 6 4 12 12 C 1.39674 * 120.00040 * 179.97438 * 2 1 3 13 13 C 1.38916 * 120.07159 * 179.72423 * 12 2 1 14 14 C 1.38110 * 119.91982 * 179.77154 * 13 12 2 15 15 C 1.38286 * 120.07631 * 0.50493 * 14 13 12 16 16 C 1.50693 * 119.92645 * 179.72457 * 15 14 13 17 17 N 1.46904 * 109.47328 * 270.02358 * 16 15 14 18 18 C 1.46897 * 111.00286 * 179.97438 * 17 16 15 19 19 C 1.52999 * 115.54746 * 34.41685 * 18 17 16 20 20 C 1.52997 * 117.49832 * 248.74920 * 18 17 16 21 21 C 1.52996 * 117.49865 * 180.08648 * 18 17 16 22 22 C 1.38293 * 120.14766 * 359.74853 * 15 14 13 23 23 C 1.38102 * 120.07322 * 359.97438 * 22 15 14 24 24 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 25 25 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 26 26 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 28 28 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 29 29 H 0.97001 * 119.99269 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.04002 * 0.02562 * 13 12 2 31 31 H 1.07995 * 119.95873 * 180.25408 * 14 13 12 32 32 H 1.08999 * 109.46953 * 30.02116 * 16 15 14 33 33 H 1.09000 * 109.47248 * 150.02627 * 16 15 14 34 34 H 1.00895 * 110.99748 * 303.95466 * 17 16 15 35 35 H 1.09004 * 109.47162 * 85.58324 * 19 18 17 36 36 H 1.08998 * 109.46998 * 205.58295 * 19 18 17 37 37 H 1.08997 * 109.47502 * 325.58456 * 19 18 17 38 38 H 1.08997 * 117.50385 * 359.97438 * 20 18 17 39 39 H 1.09001 * 117.49562 * 145.02153 * 20 18 17 40 40 H 1.08998 * 117.49897 * 214.97520 * 21 18 17 41 41 H 1.08999 * 117.49963 * 0.02562 * 21 18 17 42 42 H 1.08001 * 119.95958 * 179.97438 * 22 15 14 43 43 H 1.08005 * 120.03290 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3457 3.2572 -2.9128 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7479 5.3560 -0.6646 11 1 2.8270 3.7593 0.9113 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2113 -0.0052 14 6 4.2400 -2.4092 0.0001 15 6 3.5470 -3.6059 0.0006 16 6 4.3005 -4.9110 0.0002 17 7 4.5449 -5.3349 -1.3850 18 6 5.2796 -6.6063 -1.4247 19 6 4.9498 -7.5941 -0.3038 20 6 6.7212 -6.5734 -1.9359 21 6 5.6159 -7.1852 -2.8003 22 6 2.1641 -3.6077 0.0011 23 6 1.4705 -2.4135 0.0015 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6084 2.0285 0.5138 28 1 3.1500 1.1384 0.5139 29 1 3.8225 4.0831 -3.0900 30 1 4.0943 -0.2771 -0.0098 31 1 5.3199 -2.4113 -0.0003 32 1 5.2530 -4.7807 0.5137 33 1 3.7115 -5.6707 0.5140 34 1 3.6803 -5.4002 -1.9010 35 1 4.0796 -8.1868 -0.5862 36 1 5.8013 -8.2545 -0.1394 37 1 4.7336 -7.0451 0.6125 38 1 7.1244 -5.6085 -2.2432 39 1 7.4347 -7.2559 -1.4740 40 1 5.6028 -8.2699 -2.9068 41 1 5.2924 -6.6224 -3.6760 42 1 1.6259 -4.5441 0.0011 43 1 0.3904 -2.4156 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116094678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:22 Heat of formation + Delta-G solvation = 45.055055 kcal Electronic energy + Delta-G solvation = -20572.311942 eV Core-core repulsion = 17617.510569 eV Total energy + Delta-G solvation = -2954.801373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54844 -39.33409 -37.44506 -34.92419 -34.23102 -31.99872 -30.88242 -29.99056 -29.12625 -27.15505 -25.47980 -23.61639 -23.22520 -22.90126 -21.01798 -20.28427 -19.09538 -18.22278 -17.07110 -16.90890 -16.47300 -16.08487 -15.64019 -15.37186 -15.13985 -14.78815 -14.67059 -14.37814 -14.27317 -14.02266 -13.78797 -13.39468 -13.28162 -13.15828 -13.10238 -12.63691 -12.53761 -12.42694 -12.27308 -12.05170 -11.96326 -11.76642 -11.46347 -11.27710 -10.83108 -10.77180 -10.37935 -9.68913 -9.24988 -8.34081 -7.93162 -6.39605 0.68867 0.80138 1.33630 1.34870 1.45333 2.29974 2.52845 2.88122 2.95892 2.99852 3.39616 3.90279 4.02411 4.07152 4.11076 4.20568 4.23643 4.39954 4.44758 4.60822 4.64012 4.66794 4.78395 4.81927 4.82936 4.83544 4.87797 4.90758 4.96209 5.03666 5.06383 5.08481 5.25924 5.29065 5.35507 5.45117 5.58758 5.62612 5.90966 6.07955 6.17877 6.26154 6.49055 6.58886 6.68778 6.85755 7.25855 8.83577 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.003796 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.655905 B = 7374.356512 C = 8060.021633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.537 4.537 5 H 0.022 0.978 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.242 1.242 12 C 0.211 3.789 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.160 4.160 16 C 0.123 3.877 17 N -0.665 5.665 18 C 0.025 3.975 19 C -0.142 4.142 20 C -0.169 4.169 21 C -0.167 4.167 22 C -0.061 4.061 23 C -0.215 4.215 24 H 0.030 0.970 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.268 0.732 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.343 0.657 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.144 0.856 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -20.769 8.800 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.576 4.576 5 H 0.041 0.959 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.165 1.165 12 C 0.107 3.893 13 C -0.240 4.240 14 C -0.077 4.077 15 C -0.162 4.162 16 C -0.005 4.005 17 N -0.296 5.296 18 C -0.067 4.067 19 C -0.200 4.200 20 C -0.207 4.207 21 C -0.205 4.205 22 C -0.080 4.080 23 C -0.238 4.238 24 H 0.049 0.951 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.161 0.839 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.009 -20.044 8.633 21.847 hybrid contribution -0.228 0.738 -0.145 0.786 sum 0.781 -19.306 8.488 21.104 Atomic orbital electron populations 1.21629 0.79069 1.03163 1.00558 1.46697 1.05670 1.03309 1.77987 1.19359 0.92648 0.82424 0.94686 1.21671 1.36521 1.06706 0.92721 0.95947 1.25900 0.95454 0.98800 0.98562 1.70078 1.42704 1.24432 1.21462 0.85713 0.79843 0.77762 0.79664 1.19102 1.20474 1.16478 1.18211 0.91600 0.86565 0.92912 1.20810 0.93195 0.98674 1.11357 1.20809 0.99352 0.91355 0.96218 1.19572 0.93642 0.94424 1.08585 1.20661 0.98640 0.91929 0.89249 1.60355 1.26906 1.28223 1.14129 1.21657 0.97829 0.90692 0.96495 1.21826 1.02616 0.98126 0.97476 1.23218 0.91521 1.02216 1.03731 1.23165 1.03016 1.00921 0.93401 1.20933 0.93303 0.97367 0.96385 1.20804 1.00140 0.90704 1.12118 0.95131 0.89365 0.91057 0.94453 0.95358 0.92315 0.88247 0.86276 0.91004 0.92432 0.83737 0.91547 0.90874 0.91299 0.90111 0.87513 0.87045 0.89359 0.83866 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.23 127.77 1.31 4.62 16 2 N -0.63 -26.62 2.99 -726.54 -2.17 -28.79 16 3 C 0.23 11.12 4.02 85.63 0.34 11.46 16 4 C -0.54 -31.51 9.94 25.60 0.25 -31.25 16 5 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 6 C 0.01 0.63 5.47 84.65 0.46 1.09 16 7 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 8 Si 0.95 43.46 27.47 68.60 1.88 45.34 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 12 C 0.21 8.48 6.55 38.21 0.25 8.73 16 13 C -0.22 -9.01 9.21 22.40 0.21 -8.80 16 14 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 15 C -0.16 -4.59 5.39 -19.84 -0.11 -4.70 16 16 C 0.12 2.78 4.82 85.55 0.41 3.19 16 17 N -0.67 -15.36 6.69 -474.17 -3.17 -18.53 16 18 C 0.02 0.46 2.80 3.53 0.01 0.47 16 19 C -0.14 -2.02 9.48 71.98 0.68 -1.34 16 20 C -0.17 -3.15 10.11 30.62 0.31 -2.84 16 21 C -0.17 -2.85 10.18 30.62 0.31 -2.54 16 22 C -0.06 -1.67 9.69 22.25 0.22 -1.45 16 23 C -0.22 -6.95 9.21 22.40 0.21 -6.74 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 2.33 6.20 -2.39 -0.01 2.32 16 26 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 27 H 0.04 1.71 6.95 -2.38 -0.02 1.69 16 28 H 0.03 1.36 5.64 -2.39 -0.01 1.34 16 29 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.10 4.57 6.15 -2.91 -0.02 4.56 16 31 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 33 H 0.06 1.07 6.29 -2.39 -0.02 1.05 16 34 H 0.34 7.80 8.81 -89.70 -0.79 7.01 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.88 7.90 -2.39 -0.02 0.86 16 37 H 0.07 1.00 5.61 -2.39 -0.01 0.99 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 1.59 8.05 -2.39 -0.02 1.57 16 40 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.13 3.71 6.14 -2.91 -0.02 3.69 16 Total: -1.00 -69.08 345.55 2.07 -67.01 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.15 Total: 26.47 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 5.08 Total: -31.90 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.05 Total: -106.92 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -69.08 2.07 -67.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116094678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.067 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds