Wall clock time and date at job start Mon Mar 30 2020 03:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 115.55941 * 2 1 4 4 C 1.52993 * 117.49903 * 145.68775 * 2 1 3 5 5 C 1.52991 * 117.50099 * 214.97940 * 4 2 1 6 6 N 1.46507 * 109.47298 * 175.88060 * 5 4 2 7 7 C 1.38822 * 120.00066 * 180.02562 * 6 5 4 8 8 C 1.39797 * 119.58398 * 359.97438 * 7 6 5 9 9 C 1.38596 * 119.49004 * 180.02562 * 8 7 6 10 10 C 1.38391 * 118.68288 * 359.97438 * 9 8 7 11 11 C 1.40556 * 119.14607 * 0.02562 * 10 9 8 12 12 C 1.41315 * 119.78214 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.40031 * 119.99910 * 180.02562 * 12 11 10 15 15 N 1.30746 * 119.99920 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47337 * 89.99811 * 16 14 12 18 18 H 1.48505 * 109.47028 * 209.99775 * 16 14 12 19 19 H 1.48500 * 109.47305 * 329.99378 * 16 14 12 20 20 N 1.31952 * 119.58344 * 179.72658 * 7 6 5 21 21 C 1.53002 * 60.03222 * 107.47595 * 4 2 1 22 22 C 1.53005 * 117.49546 * 107.49814 * 21 4 2 23 23 C 1.52992 * 117.50374 * 252.52018 * 21 4 2 24 24 H 1.08998 * 109.46708 * 325.70331 * 1 2 3 25 25 H 1.09002 * 109.47155 * 85.69842 * 1 2 3 26 26 H 1.08997 * 109.47068 * 205.70123 * 1 2 3 27 27 H 1.09006 * 109.46630 * 154.29876 * 3 2 1 28 28 H 1.08999 * 109.46880 * 274.29532 * 3 2 1 29 29 H 1.09003 * 109.47219 * 34.29829 * 3 2 1 30 30 H 1.09002 * 117.49908 * 359.97438 * 4 2 1 31 31 H 1.09004 * 109.47455 * 55.87572 * 5 4 2 32 32 H 1.08999 * 109.47213 * 295.87834 * 5 4 2 33 33 H 0.96995 * 119.99562 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.25872 * 359.97438 * 8 7 6 35 35 H 1.08005 * 120.65989 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.42397 * 179.97438 * 10 9 8 37 37 H 0.96993 * 119.99681 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.46920 * 65.45031 * 22 21 4 39 39 H 1.09002 * 109.46981 * 185.45290 * 22 21 4 40 40 H 1.09001 * 109.47291 * 305.45076 * 22 21 4 41 41 H 1.09001 * 109.47357 * 8.61230 * 23 21 4 42 42 H 1.09006 * 109.47156 * 128.60779 * 23 21 4 43 43 H 1.09001 * 109.47507 * 248.60567 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 3.5490 -0.7759 1.4714 6 7 4.0194 -1.9413 2.2243 7 6 5.1994 -1.8676 2.9518 8 6 5.9323 -0.6772 2.9594 9 6 7.1104 -0.6059 3.6860 10 6 7.5272 -1.7240 4.3869 11 6 6.7464 -2.8918 4.3398 12 6 7.1597 -4.0415 5.0501 13 1 8.0725 -4.0209 5.6269 14 6 6.3856 -5.2076 5.0059 15 7 5.2803 -5.2325 4.3080 16 14 6.9315 -6.7271 5.9453 17 1 6.3577 -6.6952 7.3146 18 1 6.4568 -7.9435 5.2379 19 1 8.4139 -6.7507 6.0301 20 7 5.6126 -2.9205 3.6313 21 6 2.2367 -1.1218 -0.7650 22 6 3.5495 -0.7775 -1.4715 23 6 1.3589 -2.1571 -1.4710 24 1 -0.3633 0.8490 0.5791 25 1 -0.3633 0.0771 -1.0248 26 1 -0.3633 -0.9260 0.4457 27 1 3.1824 1.3085 0.4457 28 1 2.2775 1.7412 -1.0248 29 1 1.5811 2.0744 0.5791 30 1 1.6112 -1.8582 1.2687 31 1 3.3855 0.0568 2.1555 32 1 4.2977 -0.4957 0.7304 33 1 3.5059 -2.7642 2.2151 34 1 5.5836 0.1802 2.4028 35 1 7.6913 0.3044 3.7054 36 1 8.4410 -1.6998 4.9620 37 1 4.7440 -6.0401 4.2777 38 1 4.2892 -1.5496 -1.2599 39 1 3.3797 -0.7218 -2.5467 40 1 3.9147 0.1841 -1.1110 41 1 0.7294 -2.6607 -0.7374 42 1 0.7297 -1.6580 -2.2080 43 1 1.9921 -2.8902 -1.9708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116876980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:20 Heat of formation + Delta-G solvation = 46.637216 kcal Electronic energy + Delta-G solvation = -21074.827241 eV Core-core repulsion = 18120.094476 eV Total energy + Delta-G solvation = -2954.732765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81861 -38.07262 -34.74448 -33.15000 -31.18761 -30.44773 -29.63209 -28.73409 -27.52008 -26.28448 -25.30090 -24.42443 -21.48205 -20.35160 -19.21109 -17.77424 -17.31696 -16.14501 -15.35690 -14.93669 -14.69858 -14.56500 -14.27909 -13.94076 -13.67188 -13.03187 -12.94346 -12.76835 -12.57836 -12.44493 -12.29138 -12.04843 -11.98518 -11.86675 -11.83644 -11.73380 -11.16293 -10.95421 -10.90622 -10.78620 -10.55427 -10.38338 -9.89393 -9.60262 -9.33661 -9.23392 -8.78476 -7.85481 -7.45539 -6.43507 -6.28084 -4.42981 2.91602 3.13520 3.16925 3.28786 3.34410 3.57025 4.01693 4.20574 4.61180 4.66956 4.89181 4.89458 5.04120 5.10903 5.44057 5.51293 5.53844 5.60696 5.65688 5.80266 5.82154 5.87035 5.88274 5.94225 5.97507 6.02315 6.07013 6.08910 6.20018 6.21577 6.29527 6.40122 6.43960 6.63223 6.91435 6.94528 7.00957 7.30068 7.65431 7.87012 7.97560 8.22137 8.43285 8.75904 8.85617 9.18108 10.29978 10.45573 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004234 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.806965 B = 6611.022260 C = 7375.690099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.144 4.144 5 C 0.170 3.830 6 N -0.735 5.735 7 C 0.412 3.588 8 C -0.367 4.367 9 C -0.032 4.032 10 C -0.318 4.318 11 C 0.293 3.707 12 C -0.436 4.436 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.716 5.716 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.532 5.532 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.112 4.112 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.395 0.605 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.269 0.731 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 6.877 -9.650 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.177 4.177 4 C -0.163 4.163 5 C 0.044 3.956 6 N -0.372 5.372 7 C 0.172 3.828 8 C -0.393 4.393 9 C -0.056 4.056 10 C -0.341 4.341 11 C 0.166 3.834 12 C -0.468 4.468 13 H 0.101 0.899 14 C -0.153 4.153 15 N -0.338 5.338 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.186 1.186 20 N -0.254 5.254 21 C -0.116 4.116 22 C -0.176 4.176 23 C -0.169 4.169 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.277 6.174 -9.789 14.833 hybrid contribution 0.492 -0.197 0.455 0.699 sum -8.785 5.976 -9.334 14.143 Atomic orbital electron populations 1.21315 0.92279 1.01864 1.01434 1.21730 0.94448 0.91242 1.04318 1.21404 1.00725 0.93977 1.01612 1.22904 0.98739 1.01350 0.93280 1.20633 0.92351 0.88911 0.93671 1.44119 1.24712 1.14234 1.54150 1.18525 0.85455 0.90133 0.88656 1.20595 1.02939 0.98554 1.17259 1.20588 0.94394 0.96290 0.94370 1.21524 1.04419 0.96155 1.11992 1.18199 0.86138 0.91190 0.87895 1.19575 1.07179 0.94652 1.25392 0.89946 1.26043 0.94378 1.00112 0.94778 1.70159 1.09220 1.26881 1.27555 0.86392 0.80162 0.80556 0.80036 1.19531 1.20281 1.18613 1.68221 1.17450 1.25187 1.14492 1.21741 0.97759 0.99024 0.93102 1.21373 0.95011 1.01954 0.99288 1.21291 0.98550 0.97245 0.99832 0.92345 0.92421 0.92476 0.91683 0.92319 0.92255 0.87573 0.93001 0.92506 0.77088 0.89360 0.89024 0.88777 0.92012 0.91798 0.92544 0.91916 0.92512 0.92537 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.88 37.16 0.33 -0.74 16 2 C -0.12 -1.30 2.70 -154.47 -0.42 -1.72 16 3 C -0.12 -1.25 8.20 37.16 0.30 -0.94 16 4 C -0.14 -1.94 5.13 -90.63 -0.46 -2.40 16 5 C 0.17 2.78 3.52 -4.04 -0.01 2.76 16 6 N -0.74 -15.27 5.72 -60.39 -0.35 -15.61 16 7 C 0.41 10.36 7.65 -155.33 -1.19 9.17 16 8 C -0.37 -8.72 9.34 -38.87 -0.36 -9.09 16 9 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 10 C -0.32 -8.24 9.83 -38.65 -0.38 -8.62 16 11 C 0.29 8.35 6.55 -85.00 -0.56 7.79 16 12 C -0.44 -12.05 9.14 -37.74 -0.34 -12.40 16 13 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 14 C 0.07 1.87 5.50 -17.34 -0.10 1.78 16 15 N -0.72 -19.40 11.46 55.55 0.64 -18.76 16 16 Si 0.90 19.03 29.56 -169.99 -5.02 14.01 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 N -0.53 -15.04 7.89 -10.33 -0.08 -15.13 16 21 C -0.12 -1.37 2.70 -154.47 -0.42 -1.78 16 22 C -0.12 -1.40 8.13 37.16 0.30 -1.10 16 23 C -0.11 -1.17 8.87 37.15 0.33 -0.84 16 24 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 25 H 0.06 0.50 8.02 -51.93 -0.42 0.08 16 26 H 0.06 0.55 7.77 -51.93 -0.40 0.15 16 27 H 0.06 0.74 5.41 -51.93 -0.28 0.45 16 28 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 30 H 0.11 1.47 7.87 -51.93 -0.41 1.06 16 31 H 0.05 0.87 7.57 -51.93 -0.39 0.48 16 32 H 0.06 0.93 5.35 -51.93 -0.28 0.66 16 33 H 0.39 8.23 8.53 -40.82 -0.35 7.88 16 34 H 0.09 1.87 6.68 -52.48 -0.35 1.52 16 35 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 36 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 37 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 38 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.72 5.39 -51.93 -0.28 0.44 16 41 H 0.06 0.59 7.78 -51.93 -0.40 0.18 16 42 H 0.06 0.52 8.02 -51.93 -0.42 0.10 16 43 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -29.81 341.12 -9.93 -39.74 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.88 Total: 9.91 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -3.37 Total: -19.29 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.21 Total: -49.50 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.81 -9.93 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116876980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.374 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds