Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 115.55941 * 2 1 4 4 C 1.52993 * 117.49903 * 145.68775 * 2 1 3 5 5 C 1.52991 * 117.50099 * 214.97940 * 4 2 1 6 6 N 1.46507 * 109.47298 * 175.88060 * 5 4 2 7 7 C 1.38822 * 120.00066 * 180.02562 * 6 5 4 8 8 C 1.39797 * 119.58398 * 359.97438 * 7 6 5 9 9 C 1.38596 * 119.49004 * 180.02562 * 8 7 6 10 10 C 1.38391 * 118.68288 * 359.97438 * 9 8 7 11 11 C 1.40556 * 119.14607 * 0.02562 * 10 9 8 12 12 C 1.41315 * 119.78214 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.40031 * 119.99910 * 180.02562 * 12 11 10 15 15 N 1.30746 * 119.99920 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47337 * 89.99811 * 16 14 12 18 18 H 1.48505 * 109.47028 * 209.99775 * 16 14 12 19 19 H 1.48500 * 109.47305 * 329.99378 * 16 14 12 20 20 N 1.31952 * 119.58344 * 179.72658 * 7 6 5 21 21 C 1.53002 * 60.03222 * 107.47595 * 4 2 1 22 22 C 1.53005 * 117.49546 * 107.49814 * 21 4 2 23 23 C 1.52992 * 117.50374 * 252.52018 * 21 4 2 24 24 H 1.08998 * 109.46708 * 325.70331 * 1 2 3 25 25 H 1.09002 * 109.47155 * 85.69842 * 1 2 3 26 26 H 1.08997 * 109.47068 * 205.70123 * 1 2 3 27 27 H 1.09006 * 109.46630 * 154.29876 * 3 2 1 28 28 H 1.08999 * 109.46880 * 274.29532 * 3 2 1 29 29 H 1.09003 * 109.47219 * 34.29829 * 3 2 1 30 30 H 1.09002 * 117.49908 * 359.97438 * 4 2 1 31 31 H 1.09004 * 109.47455 * 55.87572 * 5 4 2 32 32 H 1.08999 * 109.47213 * 295.87834 * 5 4 2 33 33 H 0.96995 * 119.99562 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.25872 * 359.97438 * 8 7 6 35 35 H 1.08005 * 120.65989 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.42397 * 179.97438 * 10 9 8 37 37 H 0.96993 * 119.99681 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.46920 * 65.45031 * 22 21 4 39 39 H 1.09002 * 109.46981 * 185.45290 * 22 21 4 40 40 H 1.09001 * 109.47291 * 305.45076 * 22 21 4 41 41 H 1.09001 * 109.47357 * 8.61230 * 23 21 4 42 42 H 1.09006 * 109.47156 * 128.60779 * 23 21 4 43 43 H 1.09001 * 109.47507 * 248.60567 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 3.5490 -0.7759 1.4714 6 7 4.0194 -1.9413 2.2243 7 6 5.1994 -1.8676 2.9518 8 6 5.9323 -0.6772 2.9594 9 6 7.1104 -0.6059 3.6860 10 6 7.5272 -1.7240 4.3869 11 6 6.7464 -2.8918 4.3398 12 6 7.1597 -4.0415 5.0501 13 1 8.0725 -4.0209 5.6269 14 6 6.3856 -5.2076 5.0059 15 7 5.2803 -5.2325 4.3080 16 14 6.9315 -6.7271 5.9453 17 1 6.3577 -6.6952 7.3146 18 1 6.4568 -7.9435 5.2379 19 1 8.4139 -6.7507 6.0301 20 7 5.6126 -2.9205 3.6313 21 6 2.2367 -1.1218 -0.7650 22 6 3.5495 -0.7775 -1.4715 23 6 1.3589 -2.1571 -1.4710 24 1 -0.3633 0.8490 0.5791 25 1 -0.3633 0.0771 -1.0248 26 1 -0.3633 -0.9260 0.4457 27 1 3.1824 1.3085 0.4457 28 1 2.2775 1.7412 -1.0248 29 1 1.5811 2.0744 0.5791 30 1 1.6112 -1.8582 1.2687 31 1 3.3855 0.0568 2.1555 32 1 4.2977 -0.4957 0.7304 33 1 3.5059 -2.7642 2.2151 34 1 5.5836 0.1802 2.4028 35 1 7.6913 0.3044 3.7054 36 1 8.4410 -1.6998 4.9620 37 1 4.7440 -6.0401 4.2777 38 1 4.2892 -1.5496 -1.2599 39 1 3.3797 -0.7218 -2.5467 40 1 3.9147 0.1841 -1.1110 41 1 0.7294 -2.6607 -0.7374 42 1 0.7297 -1.6580 -2.2080 43 1 1.9921 -2.8902 -1.9708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116876980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = 31.435614 kcal Electronic energy + Delta-G solvation = -21075.486432 eV Core-core repulsion = 18120.094476 eV Total energy + Delta-G solvation = -2955.391956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.87034 -39.92964 -36.46528 -35.03382 -32.34728 -32.04262 -31.31162 -29.73527 -28.83401 -27.25029 -27.11083 -25.70919 -23.39457 -22.21714 -20.38214 -19.26683 -18.64371 -17.88518 -16.78560 -16.50858 -16.22923 -15.87316 -15.64267 -15.32468 -15.06834 -14.49834 -14.45724 -14.20582 -13.70021 -13.56979 -13.42107 -13.26596 -13.03867 -12.95388 -12.83670 -12.76245 -12.72789 -12.67174 -12.58796 -12.25775 -11.92330 -11.74127 -11.64471 -11.32039 -10.74935 -10.33466 -10.18254 -9.82467 -9.44467 -8.28293 -8.22656 -6.48328 1.06211 1.34506 1.41153 1.54558 1.58848 2.25136 2.47660 2.82377 2.92902 3.62300 3.72270 3.82983 4.05912 4.18292 4.20547 4.35541 4.39406 4.52172 4.59357 4.71443 4.74022 4.79185 4.81682 4.92263 4.98869 4.99856 5.00474 5.03992 5.05886 5.07383 5.11817 5.15054 5.17309 5.23917 5.37635 5.38957 5.43141 5.56769 5.71957 5.96255 6.07945 6.22854 6.57014 6.83931 6.95116 7.22556 8.34774 8.51671 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004234 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.806965 B = 6611.022260 C = 7375.690099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.165 4.165 5 C 0.175 3.825 6 N -0.731 5.731 7 C 0.394 3.606 8 C -0.368 4.368 9 C -0.029 4.029 10 C -0.344 4.344 11 C 0.259 3.741 12 C -0.472 4.472 13 H 0.087 0.913 14 C 0.026 3.974 15 N -0.753 5.753 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.268 1.268 19 H -0.256 1.256 20 N -0.566 5.566 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.111 4.111 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.391 0.609 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.276 0.724 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.422 7.630 -10.541 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.179 4.179 4 C -0.184 4.184 5 C 0.051 3.949 6 N -0.366 5.366 7 C 0.153 3.847 8 C -0.394 4.394 9 C -0.053 4.053 10 C -0.367 4.367 11 C 0.131 3.869 12 C -0.504 4.504 13 H 0.105 0.895 14 C -0.196 4.196 15 N -0.375 5.375 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.193 1.193 19 H -0.180 1.180 20 N -0.289 5.289 21 C -0.115 4.115 22 C -0.176 4.176 23 C -0.168 4.168 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.224 0.776 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.085 6.967 -10.708 16.276 hybrid contribution 0.687 -0.310 0.648 0.994 sum -9.398 6.657 -10.060 15.292 Atomic orbital electron populations 1.21350 0.90793 1.02139 1.02589 1.21864 0.95457 0.90952 1.01684 1.21449 1.00137 0.93668 1.02667 1.22782 0.97749 1.03439 0.94416 1.20737 0.93805 0.87177 0.93193 1.44329 1.23321 1.15406 1.53522 1.18987 0.86760 0.90235 0.88692 1.20927 1.02706 0.98846 1.16947 1.21003 0.94437 0.96972 0.92922 1.21693 1.05027 0.96498 1.13485 1.18696 0.86965 0.92560 0.88637 1.19951 1.08141 0.95821 1.26527 0.89503 1.26974 0.94059 1.03103 0.95435 1.70260 1.10350 1.28168 1.28761 0.85155 0.79821 0.75925 0.78417 1.18800 1.19298 1.17953 1.68197 1.18073 1.26864 1.15731 1.21856 0.98159 0.99775 0.91698 1.21367 0.94440 1.01221 1.00539 1.21303 0.98478 0.96967 1.00055 0.91493 0.90862 0.92782 0.92895 0.90842 0.91211 0.88354 0.93298 0.92413 0.77552 0.86719 0.85248 0.87887 0.91391 0.93983 0.90690 0.91722 0.92683 0.90656 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.88 71.98 0.64 -1.20 16 2 C -0.10 -2.00 2.70 -52.16 -0.14 -2.14 16 3 C -0.12 -2.25 8.20 71.98 0.59 -1.66 16 4 C -0.17 -4.34 5.13 -10.80 -0.06 -4.40 16 5 C 0.17 5.68 3.52 86.37 0.30 5.98 16 6 N -0.73 -30.97 5.72 -344.98 -1.97 -32.95 16 7 C 0.39 20.18 7.65 133.42 1.02 21.20 16 8 C -0.37 -17.32 9.34 22.73 0.21 -17.11 16 9 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 10 C -0.34 -18.13 9.83 22.87 0.22 -17.91 16 11 C 0.26 15.23 6.55 40.18 0.26 15.49 16 12 C -0.47 -26.94 9.14 23.46 0.21 -26.73 16 13 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 14 C 0.03 1.37 5.50 85.29 0.47 1.84 16 15 N -0.75 -41.94 11.46 21.84 0.25 -41.69 16 16 Si 0.99 39.50 29.56 68.60 2.03 41.52 16 17 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 N -0.57 -33.09 7.89 -186.59 -1.47 -34.56 16 21 C -0.11 -2.53 2.70 -52.16 -0.14 -2.67 16 22 C -0.12 -2.63 8.13 71.98 0.59 -2.04 16 23 C -0.11 -2.12 8.87 71.98 0.64 -1.48 16 24 H 0.07 1.00 7.92 -2.39 -0.02 0.98 16 25 H 0.07 1.01 8.02 -2.39 -0.02 0.99 16 26 H 0.05 0.93 7.77 -2.39 -0.02 0.92 16 27 H 0.05 1.10 5.41 -2.38 -0.01 1.09 16 28 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 30 H 0.10 2.74 7.87 -2.39 -0.02 2.72 16 31 H 0.05 1.61 7.57 -2.38 -0.02 1.60 16 32 H 0.06 1.87 5.35 -2.39 -0.01 1.86 16 33 H 0.39 16.91 8.53 -92.71 -0.79 16.12 16 34 H 0.11 4.68 6.68 -2.91 -0.02 4.66 16 35 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 37 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 38 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 40 H 0.06 1.38 5.39 -2.39 -0.01 1.37 16 41 H 0.05 1.07 7.78 -2.39 -0.02 1.05 16 42 H 0.07 1.16 8.02 -2.38 -0.02 1.14 16 43 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -65.93 341.12 4.09 -61.84 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: 0.21 Total: 39.80 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 5.05 Total: -33.96 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -3.20 Total: -109.20 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.52 kcal Total: -65.93 4.09 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116876980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.273 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds