Wall clock time and date at job start Mon Mar 30 2020 01:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 H 1.08991 * 109.47431 * 325.00008 * 14 13 2 16 16 C 1.53004 * 109.47063 * 85.00354 * 14 13 2 17 17 C 1.50705 * 109.47204 * 204.99765 * 14 13 2 18 18 N 1.30807 * 126.24533 * 315.02789 * 17 14 13 19 19 N 1.28677 * 110.28763 * 179.97438 * 18 17 14 20 20 C 1.32309 * 109.48652 * 0.02562 * 19 18 17 21 21 C 1.40814 * 133.46765 * 180.02562 * 20 19 18 22 22 C 1.36024 * 119.22691 * 179.23487 * 21 20 19 23 23 C 1.40547 * 119.74484 * 0.61872 * 22 21 20 24 24 C 1.34964 * 120.36701 * 359.58340 * 23 22 21 25 25 N 1.36064 * 126.24373 * 134.71169 * 17 14 13 26 26 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 28 28 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 29 29 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 30 30 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 33 33 H 1.08999 * 109.47497 * 59.99287 * 16 14 13 34 34 H 1.08995 * 109.47165 * 180.02562 * 16 14 13 35 35 H 1.09002 * 109.46969 * 299.99975 * 16 14 13 36 36 H 1.07997 * 120.38619 * 359.94431 * 21 20 19 37 37 H 1.07996 * 120.13079 * 180.24385 * 22 21 20 38 38 H 1.07998 * 119.82219 * 179.60934 * 23 22 21 39 39 H 1.07995 * 119.74446 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4774 0.1464 3.1851 11 1 6.6428 -2.2718 3.1122 12 1 6.6395 -0.9939 1.0512 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 1 1.2577 0.9328 -2.2908 16 6 3.4112 0.9806 -2.3224 17 6 1.9786 -0.5678 -3.6259 18 7 2.6153 -1.6761 -3.9041 19 7 2.2982 -2.0895 -5.0807 20 6 1.4291 -1.2525 -5.6233 21 6 0.7628 -1.2169 -6.8633 22 6 -0.1054 -0.2022 -7.1219 23 6 -0.3149 0.7990 -6.1581 24 6 0.3340 0.7541 -4.9755 25 7 1.2009 -0.2619 -4.6997 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7515 -1.7715 1.2057 30 1 1.6053 -0.2617 2.1370 31 1 4.0614 -2.2527 4.0299 32 1 1.4494 -1.4980 -1.4100 33 1 4.2360 0.2702 -2.3785 34 1 3.4576 1.6599 -3.1736 35 1 3.4864 1.5522 -1.3974 36 1 0.9305 -1.9924 -7.5960 37 1 -0.6273 -0.1628 -8.0666 38 1 -0.9992 1.6086 -6.3646 39 1 0.1652 1.5285 -4.2420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118291832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:26 Heat of formation + Delta-G solvation = 105.346120 kcal Electronic energy + Delta-G solvation = -20943.553186 eV Core-core repulsion = 17887.825887 eV Total energy + Delta-G solvation = -3055.727299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.58850 -38.38114 -37.35573 -34.38101 -33.14495 -31.90695 -31.14338 -28.90093 -28.02171 -27.20600 -24.40752 -23.99753 -23.30052 -22.85301 -20.53622 -19.69289 -18.13380 -17.30863 -16.59445 -16.32909 -16.02453 -15.44950 -15.10322 -14.69486 -14.27152 -13.80326 -12.97113 -12.90202 -12.75708 -12.60463 -12.40956 -12.02009 -11.86510 -11.74260 -11.56600 -11.44586 -11.29005 -11.21590 -10.91628 -10.55692 -10.45612 -10.39935 -10.03730 -9.68020 -9.27316 -8.94062 -8.21940 -8.18152 -7.68804 -5.81523 -3.78734 0.38461 0.93538 2.14835 2.68866 3.15710 3.44847 3.51682 3.57887 3.88305 4.18828 4.24751 4.46821 4.52857 4.63220 4.63699 4.88765 5.08510 5.26296 5.47000 5.52347 5.56721 5.65670 5.66064 5.79182 5.79835 5.86806 5.93303 5.99113 6.08976 6.19324 6.36197 6.55753 6.62886 6.73023 6.98477 7.49801 7.68082 7.97949 8.02619 8.19300 8.59522 8.64540 9.26135 9.82703 11.30781 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.004317 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.343341 B = 6484.503135 C = 6928.391166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 H 0.069 0.931 4 C 0.035 3.965 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.642 5.642 14 C 0.181 3.819 15 H 0.049 0.951 16 C -0.134 4.134 17 C 0.150 3.850 18 N -0.218 5.218 19 N -0.290 5.290 20 C 0.181 3.819 21 C -0.075 4.075 22 C -0.095 4.095 23 C -0.143 4.143 24 C 0.069 3.931 25 N -0.392 5.392 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.256 0.744 32 H 0.338 0.662 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 8.440 -20.289 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.003 4.003 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.275 5.275 14 C 0.068 3.932 15 H 0.066 0.934 16 C -0.193 4.193 17 C -0.112 4.112 18 N -0.056 5.056 19 N -0.136 5.136 20 C -0.068 4.068 21 C -0.097 4.097 22 C -0.119 4.119 23 C -0.165 4.165 24 C -0.053 4.053 25 N -0.072 5.072 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.210 7.131 -19.657 22.849 hybrid contribution -0.863 1.147 -0.290 1.464 sum -10.073 8.278 -19.947 23.830 Atomic orbital electron populations 1.22590 0.99587 1.01361 1.00507 1.21943 0.89739 0.98393 0.92029 0.91305 1.19098 0.96455 0.95457 0.89249 1.21142 0.91710 1.32791 1.06872 0.92127 1.24985 0.97944 0.95859 0.96086 1.69959 1.35182 1.36952 1.12535 0.86653 0.86553 0.77093 0.78051 1.21157 1.21583 1.19783 1.60673 1.58365 1.07575 1.00846 1.19881 0.98697 0.91821 0.82792 0.93384 1.21811 0.96507 0.99591 1.01361 1.25295 0.95477 0.98195 0.92260 1.74392 1.17724 1.06918 1.06613 1.75072 1.13208 1.22365 1.02914 1.22409 1.01285 0.89332 0.93790 1.20281 0.96041 1.00413 0.92937 1.21146 0.97368 0.93400 0.99995 1.20902 1.01722 1.01230 0.92663 1.21685 0.92338 0.91864 0.99456 1.43844 1.29666 1.19310 1.14420 0.92916 0.92092 0.94847 0.96389 0.96321 0.93394 0.84296 0.90554 0.93744 0.90613 0.82732 0.83684 0.82873 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.15 37.16 0.34 -2.58 16 2 C 0.09 1.71 2.34 -67.71 -0.16 1.55 16 3 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 4 C 0.03 0.88 4.65 -27.88 -0.13 0.75 16 5 C -0.49 -13.70 8.84 -34.44 -0.30 -14.01 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.78 13.29 55.43 0.74 -27.04 16 9 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.64 -12.25 5.76 -100.95 -0.58 -12.83 16 14 C 0.18 2.83 2.90 -68.86 -0.20 2.63 16 15 H 0.05 0.64 6.68 -51.93 -0.35 0.29 16 16 C -0.13 -2.10 9.38 37.16 0.35 -1.75 16 17 C 0.15 2.43 6.63 -154.22 -1.02 1.41 16 18 N -0.22 -4.18 12.18 32.95 0.40 -3.78 16 19 N -0.29 -5.18 12.31 31.14 0.38 -4.80 16 20 C 0.18 2.55 7.92 -156.05 -1.24 1.31 16 21 C -0.08 -0.71 10.11 -39.40 -0.40 -1.11 16 22 C -0.09 -0.61 10.07 -39.51 -0.40 -1.01 16 23 C -0.14 -0.91 9.98 -39.87 -0.40 -1.31 16 24 C 0.07 0.62 10.80 -16.69 -0.18 0.44 16 25 N -0.39 -5.19 2.95 -59.73 -0.18 -5.37 16 26 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.45 7.43 -51.93 -0.39 0.06 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.34 6.52 8.09 -39.29 -0.32 6.20 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.21 7.43 -51.93 -0.39 0.82 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 38 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.17 1.06 7.75 -52.49 -0.41 0.65 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -34.67 329.12 -8.69 -43.36 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.56 Total: 0.26 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.83 Total: -12.30 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.76 Total: -53.81 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.67 -8.69 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118291832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.709 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds