Wall clock time and date at job start Mon Mar 30 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 H 1.08991 * 109.47431 * 325.00008 * 14 13 2 16 16 C 1.53004 * 109.47063 * 85.00354 * 14 13 2 17 17 C 1.50705 * 109.47204 * 204.99765 * 14 13 2 18 18 N 1.30807 * 126.24533 * 315.02789 * 17 14 13 19 19 N 1.28677 * 110.28763 * 179.97438 * 18 17 14 20 20 C 1.32309 * 109.48652 * 0.02562 * 19 18 17 21 21 C 1.40814 * 133.46765 * 180.02562 * 20 19 18 22 22 C 1.36024 * 119.22691 * 179.23487 * 21 20 19 23 23 C 1.40547 * 119.74484 * 0.61872 * 22 21 20 24 24 C 1.34964 * 120.36701 * 359.58340 * 23 22 21 25 25 N 1.36064 * 126.24373 * 134.71169 * 17 14 13 26 26 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 28 28 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 29 29 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 30 30 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 33 33 H 1.08999 * 109.47497 * 59.99287 * 16 14 13 34 34 H 1.08995 * 109.47165 * 180.02562 * 16 14 13 35 35 H 1.09002 * 109.46969 * 299.99975 * 16 14 13 36 36 H 1.07997 * 120.38619 * 359.94431 * 21 20 19 37 37 H 1.07996 * 120.13079 * 180.24385 * 22 21 20 38 38 H 1.07998 * 119.82219 * 179.60934 * 23 22 21 39 39 H 1.07995 * 119.74446 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4774 0.1464 3.1851 11 1 6.6428 -2.2718 3.1122 12 1 6.6395 -0.9939 1.0512 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 1 1.2577 0.9328 -2.2908 16 6 3.4112 0.9806 -2.3224 17 6 1.9786 -0.5678 -3.6259 18 7 2.6153 -1.6761 -3.9041 19 7 2.2982 -2.0895 -5.0807 20 6 1.4291 -1.2525 -5.6233 21 6 0.7628 -1.2169 -6.8633 22 6 -0.1054 -0.2022 -7.1219 23 6 -0.3149 0.7990 -6.1581 24 6 0.3340 0.7541 -4.9755 25 7 1.2009 -0.2619 -4.6997 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7515 -1.7715 1.2057 30 1 1.6053 -0.2617 2.1370 31 1 4.0614 -2.2527 4.0299 32 1 1.4494 -1.4980 -1.4100 33 1 4.2360 0.2702 -2.3785 34 1 3.4576 1.6599 -3.1736 35 1 3.4864 1.5522 -1.3974 36 1 0.9305 -1.9924 -7.5960 37 1 -0.6273 -0.1628 -8.0666 38 1 -0.9992 1.6086 -6.3646 39 1 0.1652 1.5285 -4.2420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118291832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:25 Heat of formation + Delta-G solvation = 82.384633 kcal Electronic energy + Delta-G solvation = -20944.548871 eV Core-core repulsion = 17887.825887 eV Total energy + Delta-G solvation = -3056.722984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.57256 -39.23901 -38.73583 -35.61452 -34.69155 -33.53536 -31.98824 -30.00096 -29.60202 -28.83726 -25.36019 -25.16971 -24.64478 -24.18538 -21.71844 -21.19752 -19.07119 -18.42360 -18.06219 -17.60252 -17.02431 -16.57505 -16.45022 -15.98984 -15.65862 -15.14593 -14.57954 -14.20669 -13.72937 -13.60702 -13.46510 -13.45261 -13.21653 -13.19681 -13.07727 -12.68717 -12.54007 -12.46329 -12.41711 -12.29783 -12.10495 -11.84108 -11.53348 -11.16472 -11.07555 -10.57326 -10.45335 -9.13486 -9.07084 -8.06985 -6.10250 -0.27808 0.10833 1.25337 1.40775 1.44045 1.54898 1.64993 2.39478 2.49680 2.98657 3.15618 3.30471 3.37443 3.52725 3.80337 3.90954 4.09968 4.14299 4.19828 4.29464 4.43712 4.54060 4.63921 4.70489 4.76436 4.88337 4.96442 5.01863 5.04986 5.18322 5.22007 5.23166 5.36174 5.47396 5.53016 5.68922 5.91252 5.92918 6.30748 6.42432 6.57413 7.04010 7.51981 7.55140 9.05498 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.004317 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.343341 B = 6484.503135 C = 6928.391166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 H 0.077 0.923 4 C 0.038 3.962 5 C -0.493 4.493 6 H 0.061 0.939 7 C -0.007 4.007 8 N -0.943 5.943 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.189 3.811 15 H 0.083 0.917 16 C -0.129 4.129 17 C 0.137 3.863 18 N -0.271 5.271 19 N -0.352 5.352 20 C 0.180 3.820 21 C -0.110 4.110 22 C -0.059 4.059 23 C -0.122 4.122 24 C 0.041 3.959 25 N -0.390 5.390 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.069 0.931 29 H -0.017 1.017 30 H -0.001 1.001 31 H 0.257 0.743 32 H 0.333 0.667 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.169 0.831 37 H 0.192 0.808 38 H 0.202 0.798 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 11.382 -23.141 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 H 0.095 0.905 4 C 0.001 3.999 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.300 5.300 14 C 0.077 3.923 15 H 0.101 0.899 16 C -0.188 4.188 17 C -0.128 4.128 18 N -0.110 5.110 19 N -0.197 5.197 20 C -0.069 4.069 21 C -0.131 4.131 22 C -0.083 4.083 23 C -0.143 4.143 24 C -0.080 4.080 25 N -0.070 5.070 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.002 0.998 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.151 0.849 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.187 0.813 37 H 0.209 0.791 38 H 0.219 0.781 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.274 10.095 -22.526 27.138 hybrid contribution -0.391 0.329 0.396 0.646 sum -11.665 10.424 -22.130 27.102 Atomic orbital electron populations 1.22438 0.96588 1.01485 1.02443 1.21597 0.92080 0.97473 0.89763 0.90507 1.18983 0.95199 0.93957 0.91782 1.21534 0.93382 1.31890 1.06351 0.92110 1.25824 1.02590 0.95843 0.96008 1.70090 1.36917 1.38224 1.13299 0.85640 0.81102 0.77418 0.78020 1.19635 1.21590 1.19655 1.60452 1.58872 1.08467 1.02179 1.19819 0.99588 0.91430 0.81422 0.89924 1.21760 0.95538 0.99153 1.02331 1.25038 0.96560 0.98046 0.93142 1.74206 1.19859 1.08983 1.07931 1.74897 1.16521 1.24949 1.03369 1.23025 1.00232 0.88632 0.95016 1.20677 0.97725 1.02891 0.91831 1.21801 0.94294 0.90938 1.01274 1.21605 1.00277 1.01542 0.90876 1.22513 0.92221 0.91660 1.01654 1.43889 1.29771 1.20055 1.13246 0.93773 0.91674 0.91244 0.99818 0.98322 0.93438 0.84897 0.93997 0.90888 0.91039 0.81338 0.79091 0.78088 0.78893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 9.15 71.98 0.66 -4.58 16 2 C 0.10 3.89 2.34 44.91 0.11 4.00 16 3 H 0.08 2.86 7.11 -2.39 -0.02 2.84 16 4 C 0.04 2.01 4.65 29.85 0.14 2.15 16 5 C -0.49 -28.56 8.84 25.60 0.23 -28.34 16 6 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 8 N -0.94 -59.68 13.29 21.45 0.28 -59.40 16 9 Si 0.95 47.35 29.54 68.60 2.03 49.38 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.27 -13.34 7.11 99.48 0.71 -12.64 16 13 N -0.67 -25.93 5.76 -473.30 -2.73 -28.66 16 14 C 0.19 5.78 2.90 44.17 0.13 5.91 16 15 H 0.08 1.93 6.68 -2.39 -0.02 1.92 16 16 C -0.13 -4.00 9.38 71.98 0.68 -3.32 16 17 C 0.14 4.44 6.63 137.71 0.91 5.35 16 18 N -0.27 -11.03 12.18 -49.68 -0.61 -11.63 16 19 N -0.35 -13.27 12.31 -55.39 -0.68 -13.95 16 20 C 0.18 5.02 7.92 134.06 1.06 6.08 16 21 C -0.11 -1.81 10.11 22.39 0.23 -1.58 16 22 C -0.06 -0.44 10.07 22.32 0.22 -0.22 16 23 C -0.12 -0.79 9.98 22.08 0.22 -0.57 16 24 C 0.04 0.55 10.80 83.23 0.90 1.45 16 25 N -0.39 -9.74 2.95 -342.87 -1.01 -10.75 16 26 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.64 7.43 -2.38 -0.02 1.62 16 29 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.33 13.36 8.09 -89.69 -0.73 12.63 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.23 7.43 -2.39 -0.02 2.21 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 38 H 0.20 -0.52 8.06 -2.91 -0.02 -0.54 16 39 H 0.19 1.43 7.75 -2.91 -0.02 1.41 16 Total: -1.00 -82.92 329.12 3.55 -79.37 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.32 Total: 9.28 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.94 Total: -13.63 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -4.74 Total: -124.39 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -82.92 3.55 -79.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118291832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.755 kcal (2) G-P(sol) polarization free energy of solvation -82.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds