Wall clock time and date at job start Mon Mar 30 2020 01:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50693 * 120.00360 * 2 1 4 4 N 1.46502 * 109.47350 * 124.99907 * 3 2 1 5 5 C 1.34949 * 126.03614 * 125.00027 * 4 3 2 6 6 C 1.35313 * 107.74413 * 180.02562 * 5 4 3 7 7 C 1.50698 * 126.03724 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47251 * 84.66561 * 7 6 5 9 9 C 1.46903 * 111.00068 * 75.72301 * 8 7 6 10 10 C 1.50692 * 109.47047 * 190.00142 * 9 8 7 11 11 H 1.08005 * 120.00213 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99955 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00181 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00032 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47223 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46895 * 120.00201 * 14 12 10 17 17 H 1.48494 * 109.47441 * 240.00263 * 14 12 10 18 18 C 1.46902 * 110.99817 * 199.67797 * 8 7 6 19 19 C 1.53001 * 109.47016 * 75.80404 * 18 8 7 20 20 C 1.47209 * 109.46814 * 174.86863 * 19 18 8 21 21 N 9.35364 * 162.82898 * 335.23485 * 3 1 2 22 22 C 1.39861 * 107.92188 * 0.02562 * 6 5 4 23 23 N 1.30836 * 108.20721 * 359.97438 * 22 6 5 24 24 H 1.08005 * 120.00039 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99934 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99934 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46926 * 5.00057 * 3 2 1 28 28 H 1.09002 * 109.47529 * 245.00389 * 3 2 1 29 29 H 1.08003 * 126.12309 * 0.27592 * 5 4 3 30 30 H 1.08999 * 109.47503 * 204.66411 * 7 6 5 31 31 H 1.09001 * 109.47334 * 324.66340 * 7 6 5 32 32 H 1.08996 * 109.46882 * 310.00253 * 9 8 7 33 33 H 1.09002 * 109.46832 * 69.99946 * 9 8 7 34 34 H 0.97004 * 120.00339 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46941 * 195.79960 * 18 8 7 36 36 H 1.09000 * 109.47559 * 315.79868 * 18 8 7 37 37 H 1.08992 * 109.47218 * 294.86739 * 19 18 8 38 38 H 1.08997 * 109.47052 * 54.87303 * 19 18 8 39 39 H 1.08006 * 125.89922 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3235 1.5510 1.0609 6 6 4.8181 1.4943 2.3191 7 6 6.2604 1.6808 2.7140 8 7 6.5456 3.1140 2.8644 9 6 5.9851 3.6335 4.1190 10 6 6.0786 5.1375 4.1262 11 1 6.5116 5.6557 3.2833 12 6 5.6115 5.8521 5.2089 13 7 5.0849 5.2212 6.2355 14 14 5.7281 7.7165 5.2181 15 1 6.3566 8.1794 3.9548 16 1 4.3663 8.2970 5.3347 17 1 6.5537 8.1552 6.3719 18 6 7.9891 3.3747 2.7849 19 6 8.4437 3.2861 1.3267 20 6 9.8623 3.6674 1.2310 21 7 10.9568 3.9624 1.1568 22 6 3.7544 1.2308 3.1882 23 7 2.6603 1.1334 2.4775 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.8905 1.7420 0.1618 30 1 6.4469 1.1721 3.6598 31 1 6.9056 1.2610 1.9423 32 1 4.9403 3.3340 4.2017 33 1 6.5464 3.2305 4.9620 34 1 4.7566 5.7239 6.9974 35 1 8.2000 4.3719 3.1712 36 1 8.5253 2.6343 3.3784 37 1 8.3170 2.2647 0.9681 38 1 7.8439 3.9622 0.7174 39 1 3.8241 1.1259 4.2609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139772623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:03 Heat of formation + Delta-G solvation = 130.795489 kcal Electronic energy + Delta-G solvation = -20260.269520 eV Core-core repulsion = 17205.645788 eV Total energy + Delta-G solvation = -3054.623732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80915 -37.41461 -36.08947 -35.31548 -32.67726 -31.82585 -31.07332 -29.87812 -27.29658 -26.20807 -24.26915 -23.02971 -21.11782 -20.62499 -19.87989 -19.38807 -17.23904 -16.79686 -16.28657 -15.33038 -15.11161 -15.03261 -14.58380 -14.49284 -13.80835 -13.61338 -13.45628 -13.12266 -12.86686 -12.66699 -12.28688 -12.23934 -11.97952 -11.77365 -11.61251 -11.39436 -11.34939 -10.99330 -10.68501 -10.58539 -10.30599 -10.13684 -9.81267 -9.73595 -9.18340 -8.98810 -8.42537 -7.97074 -7.30440 -6.01514 -4.02129 1.88099 2.29087 2.97098 2.99382 3.02865 3.26191 3.31875 3.39997 3.43740 4.25098 4.45209 4.56475 4.72921 4.94287 5.13000 5.19538 5.34657 5.37275 5.40234 5.42570 5.55470 5.64236 5.78835 5.81376 5.89014 6.16107 6.19242 6.31647 6.33701 6.44091 6.57863 6.62180 7.07318 7.29708 7.34405 7.38970 7.78352 7.82237 8.09214 8.12339 8.18055 8.53306 9.05248 9.62031 11.09208 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.005269 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.451563 B = 5312.991493 C = 7025.533893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.166 4.166 3 C 0.165 3.835 4 N -0.380 5.380 5 C 0.063 3.937 6 C -0.207 4.207 7 C 0.126 3.874 8 N -0.531 5.531 9 C 0.195 3.805 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.064 3.936 19 C -0.026 4.026 20 C 0.219 3.781 21 N -0.458 5.458 22 C 0.063 3.937 23 N -0.299 5.299 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.168 0.832 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.040 0.960 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 -10.714 -12.849 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.044 3.956 4 N -0.163 5.163 5 C -0.083 4.083 6 C -0.219 4.219 7 C -0.003 4.003 8 N -0.255 5.255 9 C 0.070 3.930 10 C -0.546 4.546 11 H 0.081 0.919 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.066 4.066 19 C -0.067 4.067 20 C -0.099 4.099 21 N -0.136 5.136 22 C -0.123 4.123 23 N -0.120 5.120 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.186 0.814 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.009 0.991 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.537 -10.181 -13.269 17.330 hybrid contribution 0.728 0.740 0.860 1.348 sum -3.809 -9.441 -12.410 16.051 Atomic orbital electron populations 1.23877 0.95678 1.02235 0.98675 1.22981 0.96221 0.97987 1.01318 1.20659 0.92041 0.96655 0.86227 1.48439 1.05733 1.56407 1.05678 1.22175 0.84467 1.01910 0.99741 1.19917 0.97019 1.13152 0.91822 1.20331 0.90620 0.90284 0.99063 1.62091 1.10249 1.12248 1.40920 1.19747 0.95358 0.94992 0.82887 1.21199 1.39544 0.91277 1.02620 0.91862 1.24945 0.95447 0.98416 0.95597 1.69951 1.41121 1.35388 1.07101 0.86539 0.77665 0.85866 0.77943 1.19687 1.21112 1.21177 1.21891 0.89825 1.03250 0.91664 1.19435 0.82347 1.03384 1.01501 1.29423 0.95228 0.92682 0.92545 1.81162 1.13181 1.09872 1.09367 1.23826 0.89850 0.98597 1.00070 1.77317 1.23398 1.24676 0.86613 0.88066 0.88220 0.87054 0.89743 0.88126 0.81441 0.94584 0.91619 0.94234 0.99147 0.93031 0.88744 0.95168 0.88264 0.86699 0.80495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 14.32 29.02 0.42 -0.99 16 2 C -0.17 -1.57 9.70 -36.03 -0.35 -1.92 16 3 C 0.17 1.66 6.95 -5.20 -0.04 1.62 16 4 N -0.38 -5.34 3.67 -62.54 -0.23 -5.57 16 5 C 0.06 0.84 11.36 -17.22 -0.20 0.65 16 6 C -0.21 -3.25 5.13 -105.06 -0.54 -3.79 16 7 C 0.13 1.90 5.30 -4.97 -0.03 1.88 16 8 N -0.53 -9.65 4.35 -237.51 -1.03 -10.68 16 9 C 0.19 4.64 4.55 -4.98 -0.02 4.62 16 10 C -0.51 -13.45 8.23 -34.44 -0.28 -13.73 16 11 H 0.06 1.65 7.31 -52.48 -0.38 1.27 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.06 1.02 4.75 -3.82 -0.02 1.00 16 19 C -0.03 -0.31 5.75 -29.51 -0.17 -0.48 16 20 C 0.22 3.09 15.43 -20.76 -0.32 2.77 16 21 N -0.46 -7.68 18.54 42.15 0.78 -6.90 16 22 C 0.06 1.09 11.00 -17.37 -0.19 0.90 16 23 N -0.30 -5.15 12.41 30.62 0.38 -4.77 16 24 H 0.10 0.73 8.06 -52.48 -0.42 0.30 16 25 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 26 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 28 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 31 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 32 H 0.04 1.03 6.65 -51.93 -0.35 0.68 16 33 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.09 1.78 6.57 -51.93 -0.34 1.44 16 36 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 37 H 0.10 0.90 6.89 -51.93 -0.36 0.54 16 38 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.18 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -32.55 341.52 -6.58 -39.13 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.51 Total: -1.43 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.83 Total: -5.99 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.64 Total: -53.15 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.55 -6.58 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139772623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.923 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds