Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50693 * 120.00360 * 2 1 4 4 N 1.46502 * 109.47350 * 124.99907 * 3 2 1 5 5 C 1.34949 * 126.03614 * 125.00027 * 4 3 2 6 6 C 1.35313 * 107.74413 * 180.02562 * 5 4 3 7 7 C 1.50698 * 126.03724 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47251 * 84.66561 * 7 6 5 9 9 C 1.46903 * 111.00068 * 75.72301 * 8 7 6 10 10 C 1.50692 * 109.47047 * 190.00142 * 9 8 7 11 11 H 1.08005 * 120.00213 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99955 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00181 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00032 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47223 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46895 * 120.00201 * 14 12 10 17 17 H 1.48494 * 109.47441 * 240.00263 * 14 12 10 18 18 C 1.46902 * 110.99817 * 199.67797 * 8 7 6 19 19 C 1.53001 * 109.47016 * 75.80404 * 18 8 7 20 20 C 1.47209 * 109.46814 * 174.86863 * 19 18 8 21 21 N 9.35364 * 162.82898 * 335.23485 * 3 1 2 22 22 C 1.39861 * 107.92188 * 0.02562 * 6 5 4 23 23 N 1.30836 * 108.20721 * 359.97438 * 22 6 5 24 24 H 1.08005 * 120.00039 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99934 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99934 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46926 * 5.00057 * 3 2 1 28 28 H 1.09002 * 109.47529 * 245.00389 * 3 2 1 29 29 H 1.08003 * 126.12309 * 0.27592 * 5 4 3 30 30 H 1.08999 * 109.47503 * 204.66411 * 7 6 5 31 31 H 1.09001 * 109.47334 * 324.66340 * 7 6 5 32 32 H 1.08996 * 109.46882 * 310.00253 * 9 8 7 33 33 H 1.09002 * 109.46832 * 69.99946 * 9 8 7 34 34 H 0.97004 * 120.00339 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46941 * 195.79960 * 18 8 7 36 36 H 1.09000 * 109.47559 * 315.79868 * 18 8 7 37 37 H 1.08992 * 109.47218 * 294.86739 * 19 18 8 38 38 H 1.08997 * 109.47052 * 54.87303 * 19 18 8 39 39 H 1.08006 * 125.89922 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3235 1.5510 1.0609 6 6 4.8181 1.4943 2.3191 7 6 6.2604 1.6808 2.7140 8 7 6.5456 3.1140 2.8644 9 6 5.9851 3.6335 4.1190 10 6 6.0786 5.1375 4.1262 11 1 6.5116 5.6557 3.2833 12 6 5.6115 5.8521 5.2089 13 7 5.0849 5.2212 6.2355 14 14 5.7281 7.7165 5.2181 15 1 6.3566 8.1794 3.9548 16 1 4.3663 8.2970 5.3347 17 1 6.5537 8.1552 6.3719 18 6 7.9891 3.3747 2.7849 19 6 8.4437 3.2861 1.3267 20 6 9.8623 3.6674 1.2310 21 7 10.9568 3.9624 1.1568 22 6 3.7544 1.2308 3.1882 23 7 2.6603 1.1334 2.4775 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.8905 1.7420 0.1618 30 1 6.4469 1.1721 3.6598 31 1 6.9056 1.2610 1.9423 32 1 4.9403 3.3340 4.2017 33 1 6.5464 3.2305 4.9620 34 1 4.7566 5.7239 6.9974 35 1 8.2000 4.3719 3.1712 36 1 8.5253 2.6343 3.3784 37 1 8.3170 2.2647 0.9681 38 1 7.8439 3.9622 0.7174 39 1 3.8241 1.1259 4.2609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139772623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = 109.930192 kcal Electronic energy + Delta-G solvation = -20261.174307 eV Core-core repulsion = 17205.645788 eV Total energy + Delta-G solvation = -3055.528519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.93341 -38.75456 -37.33063 -36.15935 -34.67965 -32.86404 -32.18858 -31.27249 -28.81680 -27.37605 -25.49019 -24.75228 -22.17790 -21.96119 -20.83743 -20.51253 -18.53292 -18.25246 -17.71649 -16.60231 -16.26871 -16.11520 -16.03954 -15.66567 -15.14547 -14.87322 -14.73471 -14.23499 -13.96704 -13.89461 -13.76475 -13.57676 -13.27636 -13.11147 -12.92590 -12.68590 -12.56755 -12.47263 -12.15807 -12.14703 -11.82685 -11.54010 -11.19714 -11.08039 -10.53740 -10.46970 -10.11971 -9.13468 -8.82067 -8.11674 -6.18587 1.12830 1.20996 1.41910 1.43968 1.55090 1.83660 1.93329 2.01794 2.09158 2.45438 3.13465 3.22605 3.76570 3.84008 3.99021 4.16682 4.24673 4.31147 4.40874 4.43503 4.65512 4.68191 4.69666 4.81995 4.97573 4.99993 5.09106 5.20215 5.22760 5.36961 5.47911 5.54997 5.64737 5.71870 5.76736 5.88488 6.20267 6.39640 6.50271 6.70250 6.81798 6.95129 7.00533 7.50281 8.98975 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.005269 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.451563 B = 5312.991493 C = 7025.533893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.156 3.844 4 N -0.376 5.376 5 C 0.081 3.919 6 C -0.233 4.233 7 C 0.129 3.871 8 N -0.526 5.526 9 C 0.212 3.788 10 C -0.512 4.512 11 H 0.067 0.933 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.954 3.046 15 H -0.261 1.261 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.063 3.937 19 C -0.009 4.009 20 C 0.243 3.757 21 N -0.507 5.507 22 C 0.038 3.962 23 N -0.335 5.335 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.215 0.785 30 H 0.021 0.979 31 H 0.112 0.888 32 H 0.013 0.987 33 H -0.042 1.042 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -10.797 -15.987 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.036 3.964 4 N -0.158 5.158 5 C -0.066 4.066 6 C -0.245 4.245 7 C 0.001 3.999 8 N -0.250 5.250 9 C 0.085 3.915 10 C -0.550 4.550 11 H 0.085 0.915 12 C -0.196 4.196 13 N -0.576 5.576 14 Si 0.780 3.220 15 H -0.185 1.185 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.067 4.067 19 C -0.049 4.049 20 C -0.074 4.074 21 N -0.185 5.185 22 C -0.148 4.148 23 N -0.157 5.157 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.157 0.843 29 H 0.232 0.768 30 H 0.040 0.960 31 H 0.130 0.870 32 H 0.031 0.969 33 H -0.024 1.024 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.282 -10.274 -16.431 19.846 hybrid contribution 0.570 0.698 1.787 2.002 sum -3.712 -9.575 -14.644 17.886 Atomic orbital electron populations 1.24075 0.95602 1.03075 0.97315 1.22978 0.96550 0.97783 1.02529 1.21064 0.92230 0.96847 0.86210 1.48804 1.06791 1.54916 1.05312 1.22821 0.84259 0.99139 1.00350 1.20049 0.96909 1.14959 0.92590 1.20425 0.91484 0.88036 0.99942 1.61980 1.11387 1.14489 1.37135 1.19313 0.93728 0.93828 0.84582 1.21596 1.38286 0.92813 1.02336 0.91480 1.25775 0.95467 1.02846 0.95484 1.70084 1.42615 1.37043 1.07865 0.85559 0.77513 0.80682 0.78242 1.18462 1.21076 1.21076 1.21839 0.88579 1.01463 0.94820 1.19429 0.80688 1.06393 0.98377 1.29734 0.95290 0.91216 0.91140 1.81197 1.14846 1.11693 1.10806 1.23833 0.91086 0.99862 1.00016 1.77226 1.23850 1.26031 0.88561 0.86926 0.87783 0.87155 0.89855 0.84298 0.76829 0.96040 0.86971 0.96934 1.02413 0.93162 0.92117 0.94795 0.83917 0.84995 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 14.32 67.79 0.97 -1.50 16 2 C -0.18 -3.05 9.70 25.65 0.25 -2.80 16 3 C 0.16 2.70 6.95 85.63 0.60 3.29 16 4 N -0.38 -9.80 3.67 -351.79 -1.29 -11.09 16 5 C 0.08 1.91 11.36 83.54 0.95 2.86 16 6 C -0.23 -7.00 5.13 -20.15 -0.10 -7.11 16 7 C 0.13 3.66 5.30 85.56 0.45 4.11 16 8 N -0.53 -18.46 4.35 -905.36 -3.93 -22.39 16 9 C 0.21 10.36 4.55 85.55 0.39 10.75 16 10 C -0.51 -27.42 8.23 25.60 0.21 -27.21 16 11 H 0.07 3.47 7.31 -2.91 -0.02 3.45 16 12 C 0.00 0.10 5.46 84.66 0.46 0.56 16 13 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 14 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 C 0.06 1.90 4.75 86.30 0.41 2.31 16 19 C -0.01 -0.17 5.75 28.79 0.17 -0.01 16 20 C 0.24 6.20 15.43 89.45 1.38 7.58 16 21 N -0.51 -16.17 18.54 20.01 0.37 -15.80 16 22 C 0.04 1.33 11.00 85.23 0.94 2.27 16 23 N -0.33 -11.59 12.41 -57.03 -0.71 -12.30 16 24 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 25 H 0.10 1.47 7.84 -2.91 -0.02 1.44 16 26 H 0.11 1.89 8.06 -2.91 -0.02 1.86 16 27 H 0.08 1.48 7.79 -2.38 -0.02 1.46 16 28 H 0.14 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.22 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.02 0.67 8.00 -2.39 -0.02 0.65 16 31 H 0.11 2.11 6.56 -2.39 -0.02 2.10 16 32 H 0.01 0.68 6.65 -2.39 -0.02 0.67 16 33 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.06 2.26 6.57 -2.39 -0.02 2.24 16 36 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 37 H 0.14 1.66 6.89 -2.39 -0.02 1.64 16 38 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.16 5.91 8.06 -2.91 -0.02 5.88 16 Total: -1.00 -74.31 341.52 4.85 -69.46 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.03 Total: 6.52 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 7.07 Total: -4.88 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -5.28 Total: -117.21 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.31 4.85 -69.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139772623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.390 kcal (2) G-P(sol) polarization free energy of solvation -74.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds