Wall clock time and date at job start Mon Mar 30 2020 01:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86807 * 120.00153 * 2 1 4 4 H 1.48506 * 109.46970 * 274.98508 * 3 2 1 5 5 H 1.48492 * 109.46827 * 34.98453 * 3 2 1 6 6 H 1.48500 * 109.47041 * 154.98955 * 3 2 1 7 7 C 1.40057 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 186.31906 * 7 2 1 9 9 C 1.41269 * 120.00250 * 6.32467 * 7 2 1 10 10 C 1.40720 * 120.16064 * 173.82056 * 9 7 2 11 11 N 1.31897 * 119.92827 * 179.97438 * 10 9 7 12 12 C 1.32157 * 120.27502 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.32237 * 359.97438 * 12 11 10 14 14 N 1.38827 * 119.97192 * 179.97438 * 13 12 11 15 15 C 1.46493 * 119.99807 * 0.27565 * 14 13 12 16 16 H 1.09001 * 110.41277 * 327.20112 * 15 14 13 17 17 C 1.54842 * 110.46707 * 89.81978 * 15 14 13 18 18 C 1.54847 * 102.73791 * 156.89420 * 17 15 14 19 19 C 1.54164 * 104.32128 * 321.82060 * 18 17 15 20 20 H 1.09008 * 112.51091 * 260.85587 * 19 18 17 21 21 C 1.56435 * 109.06248 * 135.25094 * 19 18 17 22 22 N 1.48528 * 104.69972 * 222.31021 * 21 19 18 23 23 C 1.48524 * 104.21218 * 40.08328 * 22 21 19 24 24 C 1.54163 * 110.46254 * 204.72496 * 15 14 13 25 25 H 1.09000 * 111.79569 * 339.99508 * 24 15 14 26 26 N 1.32271 * 120.06103 * 0.25367 * 13 12 11 27 27 H 0.97001 * 119.99841 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.03431 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.84096 * 180.02562 * 12 11 10 30 30 H 0.97003 * 120.00191 * 179.97438 * 14 13 12 31 31 H 1.09001 * 110.76217 * 275.20935 * 17 15 14 32 32 H 1.09007 * 110.75547 * 38.58377 * 17 15 14 33 33 H 1.09000 * 110.45981 * 203.11301 * 18 17 15 34 34 H 1.08991 * 110.56785 * 80.58320 * 18 17 15 35 35 H 1.09007 * 110.00752 * 103.69008 * 21 19 18 36 36 H 1.09001 * 110.85907 * 341.35943 * 21 19 18 37 37 H 1.00901 * 111.00273 * 280.52707 * 22 21 19 38 38 H 1.09000 * 110.39732 * 201.56224 * 23 22 21 39 39 H 1.08999 * 110.49916 * 79.21050 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4954 2.6199 0.8027 6 1 3.5876 1.4120 0.5919 7 6 2.0075 -1.2129 -0.0005 8 1 3.0826 -1.2158 0.1024 9 6 1.3076 -2.4326 -0.1359 10 6 2.0143 -3.6424 -0.2674 11 7 1.3562 -4.7786 -0.3929 12 6 0.0346 -4.7862 -0.3963 13 6 -0.6790 -3.5898 -0.2663 14 7 -2.0672 -3.6062 -0.2713 15 6 -2.7842 -4.8765 -0.4066 16 1 -2.2201 -5.5664 -1.0343 17 6 -3.0486 -5.5000 0.9858 18 6 -4.2609 -6.4260 0.7206 19 6 -5.1361 -5.6339 -0.2710 20 1 -5.9642 -5.1223 0.2197 21 6 -5.6147 -6.5938 -1.4097 22 7 -5.4693 -5.8008 -2.6571 23 6 -4.1905 -5.0675 -2.4760 24 6 -4.1906 -4.6417 -0.9927 25 1 -4.5138 -3.6083 -0.8678 26 7 -0.0323 -2.4424 -0.1441 27 1 -0.4850 0.8401 0.0004 28 1 3.0942 -3.6406 -0.2647 29 1 -0.4971 -5.7207 -0.4991 30 1 -2.5624 -2.7770 -0.1808 31 1 -2.1870 -6.0777 1.3204 32 1 -3.3035 -4.7284 1.7125 33 1 -4.8069 -6.6133 1.6453 34 1 -3.9348 -7.3655 0.2747 35 1 -6.6582 -6.8675 -1.2529 36 1 -4.9910 -7.4867 -1.4523 37 1 -6.2406 -5.1602 -2.7703 38 1 -4.1604 -4.1907 -3.1229 39 1 -3.3431 -5.7209 -2.6836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155586424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:23 Heat of formation + Delta-G solvation = 44.575615 kcal Electronic energy + Delta-G solvation = -21077.117144 eV Core-core repulsion = 18018.754638 eV Total energy + Delta-G solvation = -3058.362506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.05510 -38.72235 -35.60012 -33.94402 -33.37942 -31.52599 -30.06191 -28.39822 -27.76647 -25.83446 -24.84933 -22.48710 -21.98374 -21.42218 -20.27274 -19.17337 -17.57914 -16.82612 -16.54700 -15.59109 -15.17000 -15.01565 -14.72697 -14.44774 -14.17079 -13.45421 -13.21237 -13.04447 -12.63647 -12.56156 -12.00463 -11.86096 -11.51657 -11.39334 -11.28338 -11.26029 -11.01643 -10.69316 -10.68226 -10.56053 -10.48709 -10.33752 -9.82916 -9.61454 -9.37002 -8.77088 -8.34080 -7.37844 -6.68878 -6.44461 -4.65308 2.70709 3.03921 3.07664 3.12038 3.29119 3.87252 4.00302 4.09798 4.42675 4.55389 4.72412 4.82194 5.14215 5.22876 5.29496 5.34827 5.46604 5.47968 5.57609 5.73363 5.81557 5.89578 5.93580 5.96771 6.05315 6.07630 6.23285 6.29106 6.34932 6.40917 6.54920 6.58040 6.82351 7.04212 7.15187 7.19783 7.62128 7.97388 8.07402 8.45338 8.56968 8.87223 9.43234 10.01692 10.19171 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.004432 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.068870 B = 6315.789866 C = 6788.734060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.069 3.931 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.090 0.910 9 C 0.246 3.754 10 C -0.109 4.109 11 N -0.408 5.408 12 C -0.170 4.170 13 C 0.374 3.626 14 N -0.724 5.724 15 C 0.170 3.830 16 H 0.086 0.914 17 C -0.140 4.140 18 C -0.113 4.113 19 C -0.122 4.122 20 H 0.082 0.918 21 C 0.044 3.956 22 N -0.672 5.672 23 C 0.047 3.953 24 C -0.131 4.131 25 H 0.084 0.916 26 N -0.509 5.509 27 H 0.273 0.727 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.394 0.606 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.334 0.666 38 H 0.073 0.927 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 -5.822 -0.486 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.279 4.279 11 N -0.119 5.119 12 C -0.331 4.331 13 C 0.131 3.869 14 N -0.359 5.359 15 C 0.063 3.937 16 H 0.104 0.896 17 C -0.180 4.180 18 C -0.151 4.151 19 C -0.143 4.143 20 H 0.100 0.900 21 C -0.086 4.086 22 N -0.297 5.297 23 C -0.083 4.083 24 C -0.152 4.152 25 H 0.102 0.898 26 N -0.236 5.236 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.229 0.771 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.092 0.908 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.405 -6.459 -1.022 13.147 hybrid contribution -0.107 1.878 0.829 2.056 sum -11.512 -4.581 -0.192 12.392 Atomic orbital electron populations 1.70114 1.07369 1.27899 1.27771 1.26122 0.94916 1.01286 0.93436 0.86266 0.80621 0.80561 0.79154 1.19378 1.20113 1.18286 1.19635 0.94944 0.89288 1.41161 0.89182 1.19096 0.87740 0.93212 0.88164 1.22898 0.98944 0.89353 1.16684 1.67500 1.08286 1.30155 1.05981 1.21928 0.90682 0.95872 1.24666 1.19513 0.85151 0.91956 0.90280 1.44203 1.02506 1.07290 1.81913 1.21651 0.90373 0.86386 0.95314 0.89590 1.23059 0.97673 0.98851 0.98405 1.22330 0.96082 0.98190 0.98533 1.23425 0.97765 0.96178 0.96914 0.90007 1.23587 1.01053 0.96934 0.87052 1.63282 1.04840 1.25780 1.35777 1.23156 0.93257 0.97796 0.94047 1.23348 0.95597 0.99848 0.96435 0.89787 1.69051 1.08351 1.22344 1.23831 0.91578 0.85332 0.86316 0.77078 0.91149 0.91254 0.91816 0.91173 0.91315 0.89904 0.85113 0.90822 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.34 11.51 55.55 0.64 -17.70 16 2 C 0.07 1.70 5.49 -17.34 -0.10 1.61 16 3 Si 0.91 18.08 29.57 -169.99 -5.03 13.06 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.42 -10.97 9.15 -37.75 -0.35 -11.31 16 8 H 0.09 2.18 7.86 -52.49 -0.41 1.77 16 9 C 0.25 6.78 6.54 -84.83 -0.55 6.23 16 10 C -0.11 -2.84 10.97 -16.59 -0.18 -3.02 16 11 N -0.41 -10.50 10.47 -12.11 -0.13 -10.62 16 12 C -0.17 -4.09 10.41 -16.78 -0.17 -4.26 16 13 C 0.37 9.02 7.66 -155.00 -1.19 7.84 16 14 N -0.72 -13.88 5.32 -52.27 -0.28 -14.16 16 15 C 0.17 2.55 2.44 -66.36 -0.16 2.38 16 16 H 0.09 1.37 5.42 -51.93 -0.28 1.09 16 17 C -0.14 -1.93 6.57 -24.79 -0.16 -2.09 16 18 C -0.11 -1.19 6.39 -25.15 -0.16 -1.35 16 19 C -0.12 -1.24 4.04 -87.16 -0.35 -1.59 16 20 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 21 C 0.04 0.41 7.05 -1.08 -0.01 0.41 16 22 N -0.67 -7.11 7.62 -108.53 -0.83 -7.94 16 23 C 0.05 0.56 7.00 -2.23 -0.02 0.55 16 24 C -0.13 -1.59 3.57 -88.32 -0.32 -1.90 16 25 H 0.08 1.05 7.79 -51.93 -0.40 0.64 16 26 N -0.51 -13.88 8.10 -10.14 -0.08 -13.96 16 27 H 0.27 6.37 8.29 -40.82 -0.34 6.03 16 28 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 29 H 0.12 2.54 6.18 -52.48 -0.32 2.22 16 30 H 0.39 7.56 8.53 -40.82 -0.35 7.21 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.70 7.22 -51.93 -0.38 0.33 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.81 7.27 -51.93 -0.38 0.44 16 37 H 0.33 3.06 8.92 -39.29 -0.35 2.71 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.10 7.19 -51.93 -0.37 0.73 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -29.45 312.78 -10.04 -39.50 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.34 Total: 13.63 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.72 Total: -6.52 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.68 Total: -64.39 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.45 -10.04 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155586424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.074 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds