Wall clock time and date at job start Mon Mar 30 2020 01:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86807 * 120.00153 * 2 1 4 4 H 1.48506 * 109.46970 * 274.98508 * 3 2 1 5 5 H 1.48492 * 109.46827 * 34.98453 * 3 2 1 6 6 H 1.48500 * 109.47041 * 154.98955 * 3 2 1 7 7 C 1.40057 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 186.31906 * 7 2 1 9 9 C 1.41269 * 120.00250 * 6.32467 * 7 2 1 10 10 C 1.40720 * 120.16064 * 173.82056 * 9 7 2 11 11 N 1.31897 * 119.92827 * 179.97438 * 10 9 7 12 12 C 1.32157 * 120.27502 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.32237 * 359.97438 * 12 11 10 14 14 N 1.38827 * 119.97192 * 179.97438 * 13 12 11 15 15 C 1.46493 * 119.99807 * 0.27565 * 14 13 12 16 16 H 1.09001 * 110.41277 * 327.20112 * 15 14 13 17 17 C 1.54842 * 110.46707 * 89.81978 * 15 14 13 18 18 C 1.54847 * 102.73791 * 156.89420 * 17 15 14 19 19 C 1.54164 * 104.32128 * 321.82060 * 18 17 15 20 20 H 1.09008 * 112.51091 * 260.85587 * 19 18 17 21 21 C 1.56435 * 109.06248 * 135.25094 * 19 18 17 22 22 N 1.48528 * 104.69972 * 222.31021 * 21 19 18 23 23 C 1.48524 * 104.21218 * 40.08328 * 22 21 19 24 24 C 1.54163 * 110.46254 * 204.72496 * 15 14 13 25 25 H 1.09000 * 111.79569 * 339.99508 * 24 15 14 26 26 N 1.32271 * 120.06103 * 0.25367 * 13 12 11 27 27 H 0.97001 * 119.99841 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.03431 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.84096 * 180.02562 * 12 11 10 30 30 H 0.97003 * 120.00191 * 179.97438 * 14 13 12 31 31 H 1.09001 * 110.76217 * 275.20935 * 17 15 14 32 32 H 1.09007 * 110.75547 * 38.58377 * 17 15 14 33 33 H 1.09000 * 110.45981 * 203.11301 * 18 17 15 34 34 H 1.08991 * 110.56785 * 80.58320 * 18 17 15 35 35 H 1.09007 * 110.00752 * 103.69008 * 21 19 18 36 36 H 1.09001 * 110.85907 * 341.35943 * 21 19 18 37 37 H 1.00901 * 111.00273 * 280.52707 * 22 21 19 38 38 H 1.09000 * 110.39732 * 201.56224 * 23 22 21 39 39 H 1.08999 * 110.49916 * 79.21050 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4954 2.6199 0.8027 6 1 3.5876 1.4120 0.5919 7 6 2.0075 -1.2129 -0.0005 8 1 3.0826 -1.2158 0.1024 9 6 1.3076 -2.4326 -0.1359 10 6 2.0143 -3.6424 -0.2674 11 7 1.3562 -4.7786 -0.3929 12 6 0.0346 -4.7862 -0.3963 13 6 -0.6790 -3.5898 -0.2663 14 7 -2.0672 -3.6062 -0.2713 15 6 -2.7842 -4.8765 -0.4066 16 1 -2.2201 -5.5664 -1.0343 17 6 -3.0486 -5.5000 0.9858 18 6 -4.2609 -6.4260 0.7206 19 6 -5.1361 -5.6339 -0.2710 20 1 -5.9642 -5.1223 0.2197 21 6 -5.6147 -6.5938 -1.4097 22 7 -5.4693 -5.8008 -2.6571 23 6 -4.1905 -5.0675 -2.4760 24 6 -4.1906 -4.6417 -0.9927 25 1 -4.5138 -3.6083 -0.8678 26 7 -0.0323 -2.4424 -0.1441 27 1 -0.4850 0.8401 0.0004 28 1 3.0942 -3.6406 -0.2647 29 1 -0.4971 -5.7207 -0.4991 30 1 -2.5624 -2.7770 -0.1808 31 1 -2.1870 -6.0777 1.3204 32 1 -3.3035 -4.7284 1.7125 33 1 -4.8069 -6.6133 1.6453 34 1 -3.9348 -7.3655 0.2747 35 1 -6.6582 -6.8675 -1.2529 36 1 -4.9910 -7.4867 -1.4523 37 1 -6.2406 -5.1602 -2.7703 38 1 -4.1604 -4.1907 -3.1229 39 1 -3.3431 -5.7209 -2.6836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155586424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:18 Heat of formation + Delta-G solvation = 24.065857 kcal Electronic energy + Delta-G solvation = -21078.006514 eV Core-core repulsion = 18018.754638 eV Total energy + Delta-G solvation = -3059.251876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24062 -40.44773 -36.95566 -35.80255 -34.71953 -33.32868 -31.50051 -29.84652 -28.77940 -27.76064 -25.97851 -24.33627 -23.12298 -22.94190 -21.54233 -20.20529 -19.37664 -18.25721 -17.87496 -17.21592 -16.74217 -16.66101 -15.88678 -15.82950 -15.54980 -14.98230 -14.73690 -14.47994 -13.77879 -13.59222 -13.29635 -13.22728 -13.16230 -12.90616 -12.80784 -12.54061 -12.33361 -11.99076 -11.93979 -11.70987 -11.68483 -11.52056 -11.47281 -11.36875 -11.26701 -10.23422 -9.62087 -9.32639 -8.45924 -8.33731 -6.64557 0.83762 1.25843 1.41727 1.55431 1.56888 2.20644 2.49288 2.82646 3.21558 3.44123 3.57402 3.88715 3.95115 4.12490 4.20740 4.31675 4.36069 4.38881 4.41522 4.43709 4.49965 4.60585 4.64850 4.78322 4.88295 4.95961 5.01757 5.08198 5.14364 5.15038 5.19360 5.19718 5.30986 5.41163 5.68989 5.72667 6.09188 6.26830 6.44618 6.64683 6.70051 7.00409 7.46337 8.08159 8.34492 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.004432 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.068870 B = 6315.789866 C = 6788.734060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.024 3.976 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.216 3.784 10 C -0.136 4.136 11 N -0.417 5.417 12 C -0.176 4.176 13 C 0.370 3.630 14 N -0.713 5.713 15 C 0.164 3.836 16 H 0.076 0.924 17 C -0.139 4.139 18 C -0.104 4.104 19 C -0.113 4.113 20 H 0.097 0.903 21 C 0.047 3.953 22 N -0.675 5.675 23 C 0.049 3.951 24 C -0.124 4.124 25 H 0.082 0.918 26 N -0.540 5.540 27 H 0.282 0.718 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.394 0.606 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.344 0.656 38 H 0.069 0.931 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 -5.654 -0.371 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.199 4.199 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.475 4.475 8 H 0.118 0.882 9 C 0.088 3.912 10 C -0.305 4.305 11 N -0.129 5.129 12 C -0.338 4.338 13 C 0.124 3.876 14 N -0.347 5.347 15 C 0.058 3.942 16 H 0.094 0.906 17 C -0.178 4.178 18 C -0.142 4.142 19 C -0.133 4.133 20 H 0.115 0.885 21 C -0.083 4.083 22 N -0.301 5.301 23 C -0.081 4.081 24 C -0.145 4.145 25 H 0.101 0.899 26 N -0.268 5.268 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.229 0.771 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.087 0.913 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.952 -6.331 -0.908 14.445 hybrid contribution 0.259 1.756 0.783 1.940 sum -12.693 -4.574 -0.125 13.493 Atomic orbital electron populations 1.70191 1.09086 1.29505 1.27660 1.27086 0.95766 1.04728 0.92317 0.85028 0.79226 0.75171 0.79310 1.18875 1.19173 1.17458 1.20064 0.95727 0.90008 1.41717 0.88167 1.19534 0.88442 0.94270 0.88918 1.23052 0.99617 0.89343 1.18448 1.67493 1.09118 1.30146 1.06121 1.22304 0.90457 0.96885 1.24172 1.19822 0.86997 0.91398 0.89346 1.44382 1.00822 1.08960 1.80509 1.21929 0.91423 0.84416 0.96437 0.90579 1.22991 0.98795 0.99043 0.96992 1.22302 0.94600 0.97642 0.99627 1.23413 0.97465 0.95619 0.96818 0.88454 1.23620 1.02414 0.96321 0.85951 1.63247 1.04459 1.25887 1.36518 1.23037 0.93764 0.97469 0.93796 1.23299 0.93997 1.00521 0.96710 0.89936 1.69064 1.08585 1.23732 1.25445 0.90730 0.84157 0.84050 0.77127 0.92625 0.92166 0.89983 0.90376 0.89036 0.90144 0.83968 0.91273 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.78 11.51 21.84 0.25 -38.53 16 2 C 0.02 1.21 5.49 85.30 0.47 1.68 16 3 Si 0.99 36.71 29.57 68.60 2.03 38.74 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 7 C -0.44 -23.71 9.15 23.46 0.21 -23.49 16 8 H 0.10 4.93 7.86 -2.91 -0.02 4.91 16 9 C 0.22 12.30 6.54 40.16 0.26 12.56 16 10 C -0.14 -7.33 10.97 85.29 0.94 -6.39 16 11 N -0.42 -21.94 10.47 -192.24 -2.01 -23.96 16 12 C -0.18 -8.59 10.41 85.05 0.89 -7.71 16 13 C 0.37 18.23 7.66 133.35 1.02 19.25 16 14 N -0.71 -27.69 5.32 -319.28 -1.70 -29.39 16 15 C 0.16 4.83 2.44 46.02 0.11 4.95 16 16 H 0.08 2.42 5.42 -2.39 -0.01 2.41 16 17 C -0.14 -3.69 6.57 31.85 0.21 -3.48 16 18 C -0.10 -1.92 6.39 31.62 0.20 -1.72 16 19 C -0.11 -1.96 4.04 -8.55 -0.03 -1.99 16 20 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 21 C 0.05 0.74 7.05 87.19 0.61 1.35 16 22 N -0.68 -12.78 7.62 -497.28 -3.79 -16.57 16 23 C 0.05 1.13 7.00 86.44 0.61 1.74 16 24 C -0.12 -2.84 3.57 -9.30 -0.03 -2.87 16 25 H 0.08 1.94 7.79 -2.39 -0.02 1.93 16 26 N -0.54 -30.33 8.10 -186.00 -1.51 -31.83 16 27 H 0.28 13.17 8.29 -92.71 -0.77 12.40 16 28 H 0.14 6.93 8.06 -2.91 -0.02 6.90 16 29 H 0.14 6.09 6.18 -2.91 -0.02 6.07 16 30 H 0.39 15.33 8.53 -92.71 -0.79 14.54 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.36 7.22 -2.39 -0.02 1.34 16 35 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.35 7.27 -2.39 -0.02 1.33 16 37 H 0.34 5.42 8.92 -89.69 -0.80 4.62 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.80 7.19 -2.39 -0.02 1.78 16 Total: -1.00 -64.66 312.78 -1.77 -66.43 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.50 Total: 41.24 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.46 Total: -6.12 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -8.76 Total: -140.28 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -64.66 -1.77 -66.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155586424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.497 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds