Wall clock time and date at job start Mon Mar 30 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86802 * 120.00458 * 2 1 4 4 H 1.48495 * 109.47022 * 274.66521 * 3 2 1 5 5 H 1.48503 * 109.46926 * 34.66491 * 3 2 1 6 6 H 1.48504 * 109.47181 * 154.66268 * 3 2 1 7 7 C 1.40058 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00263 * 162.32099 * 7 2 1 9 9 C 1.41272 * 120.00200 * 342.32467 * 7 2 1 10 10 C 1.40729 * 120.15314 * 334.99963 * 9 7 2 11 11 N 1.31904 * 119.92357 * 179.75356 * 10 9 7 12 12 C 1.32149 * 120.27780 * 0.53069 * 11 10 9 13 13 C 1.39930 * 120.32004 * 359.72423 * 12 11 10 14 14 N 1.38826 * 119.96805 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00071 * 0.02562 * 14 13 12 16 16 H 1.08992 * 109.57657 * 325.00045 * 15 14 13 17 17 C 1.53141 * 109.57860 * 85.26147 * 15 14 13 18 18 N 1.47184 * 109.22362 * 119.76611 * 17 15 14 19 19 C 1.46944 * 111.01653 * 62.10356 * 18 17 15 20 20 C 1.53129 * 109.35398 * 297.97292 * 19 18 17 21 21 C 1.53385 * 109.57818 * 204.73425 * 15 14 13 22 22 C 1.53390 * 108.60125 * 299.15677 * 21 15 14 23 23 C 1.46944 * 111.13177 * 298.08461 * 18 17 15 24 24 N 1.32258 * 120.05941 * 0.02562 * 13 12 11 25 25 H 0.97001 * 119.99160 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.03558 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.84329 * 179.75171 * 12 11 10 28 28 H 0.97001 * 119.99952 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.49136 * 239.78421 * 17 15 14 30 30 H 1.09001 * 109.48849 * 359.85098 * 17 15 14 31 31 H 1.08993 * 109.49563 * 178.00315 * 19 18 17 32 32 H 1.09002 * 109.50801 * 57.94061 * 19 18 17 33 33 H 1.09009 * 109.56955 * 240.13964 * 20 19 18 34 34 H 1.08998 * 109.68415 * 119.81914 * 20 19 18 35 35 H 1.09005 * 110.11307 * 60.58827 * 21 15 14 36 36 H 1.08995 * 109.58043 * 60.79910 * 22 21 15 37 37 H 1.09003 * 109.57487 * 181.18741 * 22 21 15 38 38 H 1.09006 * 109.49009 * 181.91832 * 23 18 17 39 39 H 1.08999 * 109.49208 * 301.96520 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3904 2.1033 -1.3954 5 1 1.4917 2.6222 0.7964 6 1 3.5848 1.4136 0.5992 7 6 2.0075 -1.2130 -0.0005 8 1 3.0493 -1.2350 -0.2846 9 6 1.3512 -2.4077 0.3704 10 6 0.2254 -2.3633 1.2137 11 7 -0.3869 -3.4812 1.5533 12 6 0.0585 -4.6450 1.1132 13 6 1.1801 -4.7023 0.2785 14 7 1.6421 -5.9288 -0.1790 15 6 0.9550 -7.1624 0.2116 16 1 0.5818 -7.0654 1.2310 17 6 -0.2157 -7.4215 -0.7411 18 7 -0.0135 -8.7131 -1.4172 19 6 0.0081 -9.8175 -0.4482 20 6 1.1827 -9.6245 0.5151 21 6 1.9320 -8.3422 0.1319 22 6 2.4214 -8.4753 -1.3157 23 6 1.2121 -8.7007 -2.2277 24 7 1.8011 -3.5890 -0.0741 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1393 -1.4147 1.5789 27 1 -0.4458 -5.5562 1.3989 28 1 2.4197 -5.9691 -0.7574 29 1 -1.1466 -7.4470 -0.1747 30 1 -0.2632 -6.6251 -1.4838 31 1 0.1233 -10.7635 -0.9772 32 1 -0.9256 -9.8267 0.1142 33 1 1.8578 -10.4773 0.4432 34 1 0.8101 -9.5387 1.5359 35 1 2.7703 -8.1811 0.8098 36 1 2.9373 -7.5622 -1.6123 37 1 3.1015 -9.3234 -1.3947 38 1 1.3176 -9.6559 -2.7422 39 1 1.1547 -7.8967 -2.9615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155667706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:27 Heat of formation + Delta-G solvation = 27.592233 kcal Electronic energy + Delta-G solvation = -21267.632440 eV Core-core repulsion = 18208.533479 eV Total energy + Delta-G solvation = -3059.098961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93640 -40.73473 -36.82828 -35.69045 -34.12018 -33.05636 -31.92333 -31.43095 -29.36128 -27.91235 -24.42170 -24.33622 -23.91815 -23.70224 -22.70930 -19.62045 -18.78752 -18.05514 -17.82890 -17.33545 -17.10158 -16.83334 -16.67265 -16.13312 -15.20633 -15.07722 -14.82506 -14.03967 -13.89920 -13.66877 -13.39057 -13.19936 -13.14783 -13.08674 -13.02081 -12.95912 -12.68588 -12.51543 -12.02639 -11.91154 -11.78493 -11.73774 -11.35706 -11.23787 -11.08115 -10.51176 -9.35067 -9.24868 -8.85433 -8.44168 -6.66962 0.72605 1.10582 1.40748 1.52270 1.59373 2.17091 2.34512 2.65010 3.03285 3.53641 3.67393 3.73939 3.87226 4.03918 4.13914 4.20959 4.25632 4.29916 4.34309 4.38703 4.45317 4.49796 4.68047 4.83525 4.92741 4.96530 5.00104 5.03281 5.10283 5.12585 5.17497 5.19044 5.23726 5.28425 5.71793 6.01210 6.08290 6.18888 6.30673 6.45804 6.62172 6.87522 7.37917 7.85294 8.16766 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.004077 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.493754 B = 6866.515337 C = 7122.571733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.040 3.960 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.256 1.256 7 C -0.455 4.455 8 H 0.085 0.915 9 C 0.240 3.760 10 C -0.075 4.075 11 N -0.428 5.428 12 C -0.162 4.162 13 C 0.376 3.624 14 N -0.712 5.712 15 C 0.134 3.866 16 H 0.074 0.926 17 C 0.046 3.954 18 N -0.537 5.537 19 C 0.049 3.951 20 C -0.139 4.139 21 C -0.092 4.092 22 C -0.145 4.145 23 C 0.053 3.947 24 N -0.613 5.613 25 H 0.300 0.700 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.395 0.605 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -15.340 -1.528 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.179 4.179 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.180 1.180 7 C -0.488 4.488 8 H 0.103 0.897 9 C 0.112 3.888 10 C -0.244 4.244 11 N -0.140 5.140 12 C -0.324 4.324 13 C 0.133 3.867 14 N -0.348 5.348 15 C 0.027 3.973 16 H 0.092 0.908 17 C -0.085 4.085 18 N -0.257 5.257 19 C -0.079 4.079 20 C -0.179 4.179 21 C -0.112 4.112 22 C -0.185 4.185 23 C -0.075 4.075 24 N -0.342 5.342 25 H 0.111 0.889 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.231 0.769 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.080 -15.483 -1.773 15.722 hybrid contribution 1.037 1.116 0.271 1.547 sum 3.117 -14.367 -1.502 14.778 Atomic orbital electron populations 1.69806 1.09456 1.31994 1.31803 1.27014 0.95580 1.05021 0.90295 0.84889 0.78959 0.74224 0.79774 1.18290 1.18160 1.17955 1.19637 0.98545 0.90457 1.40172 0.89668 1.19383 0.90534 0.90807 0.88026 1.23254 1.00543 0.95697 1.04900 1.67636 1.28002 0.99048 1.19345 1.22419 1.02405 0.96183 1.11354 1.19504 0.90328 0.87333 0.89542 1.44415 1.34058 1.01155 1.55134 1.21723 0.93728 0.83111 0.98774 0.90759 1.22727 0.97724 0.91584 0.96417 1.62554 1.36270 1.02978 1.23909 1.22348 0.98193 0.94344 0.93019 1.22233 0.98597 0.96485 1.00537 1.21395 0.97754 0.94065 0.97982 1.22195 0.99205 1.02596 0.94456 1.22219 0.87074 1.02926 0.95305 1.68472 1.36697 0.97961 1.31104 0.88896 0.83905 0.83374 0.76871 0.90123 0.92677 0.88768 0.90230 0.89206 0.90954 0.90073 0.92780 0.89197 0.88579 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.38 10.97 21.84 0.24 -41.14 16 2 C 0.04 1.99 5.14 85.30 0.44 2.42 16 3 Si 1.00 36.60 29.59 68.60 2.03 38.63 16 4 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 5 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.45 -25.07 9.28 23.46 0.22 -24.85 16 8 H 0.09 4.58 7.91 -2.91 -0.02 4.56 16 9 C 0.24 13.97 6.41 40.17 0.26 14.23 16 10 C -0.07 -4.31 9.88 85.29 0.84 -3.47 16 11 N -0.43 -23.45 10.47 -192.23 -2.01 -25.46 16 12 C -0.16 -7.92 10.36 85.06 0.88 -7.03 16 13 C 0.38 18.02 7.65 133.36 1.02 19.04 16 14 N -0.71 -25.99 5.00 -323.28 -1.62 -27.61 16 15 C 0.13 3.77 2.10 45.17 0.09 3.86 16 16 H 0.07 2.22 6.46 -2.39 -0.02 2.20 16 17 C 0.05 1.27 5.83 86.30 0.50 1.78 16 18 N -0.54 -12.04 5.22 -894.41 -4.67 -16.71 16 19 C 0.05 0.81 6.09 86.34 0.53 1.34 16 20 C -0.14 -2.20 5.75 30.77 0.18 -2.02 16 21 C -0.09 -1.95 3.13 -10.40 -0.03 -1.98 16 22 C -0.15 -2.81 5.58 30.77 0.17 -2.64 16 23 C 0.05 1.07 6.10 86.34 0.53 1.60 16 24 N -0.61 -33.76 10.49 -185.99 -1.95 -35.71 16 25 H 0.30 13.55 8.29 -92.71 -0.77 12.78 16 26 H 0.14 8.34 6.18 -2.91 -0.02 8.32 16 27 H 0.15 6.22 6.19 -2.91 -0.02 6.20 16 28 H 0.40 13.92 7.02 -92.71 -0.65 13.26 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.88 7.86 -2.39 -0.02 1.87 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.05 1.20 6.53 -2.39 -0.02 1.19 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.52 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.42 306.08 -1.94 -67.36 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.42 Total: 38.36 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.62 Total: 2.28 kcal Atomic # 7 Polarization: -136.62 SS G_CDS: -10.01 Total: -146.63 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -65.42 -1.94 -67.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155667706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.956 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds