Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46950 * 269.99967 * 3 2 1 5 5 H 1.48500 * 109.47355 * 29.99877 * 3 2 1 6 6 H 1.48501 * 109.47332 * 149.99715 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 C 1.51261 * 120.85169 * 0.02562 * 7 2 1 9 9 C 1.53232 * 108.53467 * 231.32435 * 8 7 2 10 10 C 1.52954 * 109.40610 * 305.36821 * 9 8 7 11 11 H 1.09001 * 109.41489 * 303.56466 * 10 9 8 12 12 N 1.46498 * 109.41709 * 183.70544 * 10 9 8 13 13 C 1.38545 * 120.00330 * 154.99765 * 12 10 9 14 14 N 1.33148 * 120.64907 * 0.02562 * 13 12 10 15 15 C 1.31754 * 120.67939 * 179.97438 * 14 13 12 16 16 N 1.31875 * 121.97360 * 0.25119 * 15 14 13 17 17 C 1.32361 * 120.83215 * 359.47274 * 16 15 14 18 18 C 1.38182 * 119.15968 * 0.52545 * 17 16 15 19 19 C 1.50859 * 108.47331 * 179.70413 * 18 17 16 20 20 N 1.48138 * 105.63272 * 342.67789 * 19 18 17 21 21 C 1.48110 * 103.86474 * 27.29918 * 20 19 18 22 22 C 1.52960 * 109.81493 * 63.59945 * 10 9 8 23 23 C 1.51276 * 120.84972 * 179.97438 * 7 2 1 24 24 H 0.97003 * 120.00394 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.63125 * 111.60878 * 8 7 2 26 26 H 1.09001 * 109.62709 * 351.03715 * 8 7 2 27 27 H 1.09009 * 109.48301 * 185.39053 * 9 8 7 28 28 H 1.09000 * 109.48687 * 65.34982 * 9 8 7 29 29 H 0.97002 * 119.99628 * 335.00590 * 12 10 9 30 30 H 1.08002 * 119.00835 * 179.97438 * 15 14 13 31 31 H 1.08997 * 110.21373 * 101.72218 * 19 18 17 32 32 H 1.09003 * 110.21161 * 223.64268 * 19 18 17 33 33 H 1.00897 * 110.99934 * 267.94326 * 20 19 18 34 34 H 1.09006 * 110.20002 * 213.60840 * 21 20 19 35 35 H 1.08999 * 110.27385 * 91.76091 * 21 20 19 36 36 H 1.09000 * 109.48290 * 56.38351 * 22 10 9 37 37 H 1.09004 * 109.48367 * 176.42189 * 22 10 9 38 38 H 1.08997 * 109.62999 * 248.39189 * 23 7 2 39 39 H 1.09008 * 109.62384 * 8.96440 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1352 10 6 3.3400 -3.5069 0.9841 11 1 3.5741 -3.9110 -0.0008 12 7 3.8600 -4.4073 2.0160 13 6 5.0499 -5.0859 1.8079 14 7 5.7316 -4.9288 0.6750 15 6 6.8635 -5.5734 0.4766 16 7 7.3650 -6.3968 1.3763 17 6 6.7472 -6.6001 2.5291 18 6 5.5567 -5.9450 2.7796 19 6 5.0642 -6.3541 4.1456 20 7 5.8082 -7.5894 4.4847 21 6 7.0737 -7.4610 3.7261 22 6 3.9907 -2.1309 1.1351 23 6 3.5171 -1.2164 0.0000 24 1 -0.4851 0.8400 -0.0004 25 1 1.4200 -3.0193 -0.9537 26 1 0.2037 -2.3409 0.1600 27 1 1.3708 -4.3733 1.0901 28 1 1.5900 -2.9196 2.0941 29 1 3.3712 -4.5286 2.8450 30 1 7.3941 -5.4262 -0.4525 31 1 5.2803 -5.5722 4.8736 32 1 3.9934 -6.5557 4.1150 33 1 5.2962 -8.4101 4.1979 34 1 7.4189 -8.4425 3.4010 35 1 7.8348 -6.9792 4.3399 36 1 3.7064 -1.6976 2.0940 37 1 5.0749 -2.2344 1.0900 38 1 3.8773 -1.6005 -0.9544 39 1 3.8982 -0.2076 0.1591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = 49.975170 kcal Electronic energy + Delta-G solvation = -21074.679655 eV Core-core repulsion = 18016.551291 eV Total energy + Delta-G solvation = -3058.128364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31818 -37.99810 -37.32750 -34.97470 -32.55320 -31.60057 -30.13002 -29.62990 -28.42692 -27.01575 -24.42465 -22.92562 -22.08886 -21.47525 -21.10014 -19.58011 -17.89008 -17.47469 -16.40357 -16.09665 -15.19370 -14.97974 -14.71440 -14.48438 -14.32062 -13.65600 -13.46799 -13.19662 -12.90370 -12.60400 -12.47363 -12.27636 -12.21165 -11.77255 -11.29380 -11.01819 -10.76369 -10.74471 -10.55152 -10.17372 -10.03224 -9.67802 -9.48222 -9.25648 -9.11076 -8.93166 -8.71460 -8.51480 -7.78125 -6.14712 -4.05781 1.03585 1.48511 3.24517 3.32053 3.33494 3.34121 3.75059 3.89497 3.93766 4.32427 4.34791 4.58453 4.91942 4.97432 5.11989 5.21148 5.35033 5.54642 5.57314 5.65302 5.69965 5.82502 6.11896 6.14932 6.32361 6.42684 6.53599 6.65764 6.82230 6.82798 6.84662 6.92671 7.00615 7.10631 7.38589 7.42833 7.60156 7.64618 7.73690 7.82615 8.32955 8.43188 8.91445 9.50149 10.94761 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.004288 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.076972 B = 6527.695496 C = 6852.795893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.488 4.488 8 C 0.014 3.986 9 C -0.115 4.115 10 C 0.160 3.840 11 H 0.082 0.918 12 N -0.697 5.697 13 C 0.468 3.532 14 N -0.565 5.565 15 C 0.340 3.660 16 N -0.561 5.561 17 C 0.161 3.839 18 C -0.321 4.321 19 C 0.102 3.898 20 N -0.649 5.649 21 C 0.093 3.907 22 C -0.110 4.110 23 C -0.018 4.018 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.404 0.596 30 H 0.195 0.805 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.342 0.658 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.035 0.965 38 H 0.020 0.980 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.903 -12.444 6.700 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.507 4.507 8 C -0.024 4.024 9 C -0.154 4.154 10 C 0.057 3.943 11 H 0.100 0.900 12 N -0.325 5.325 13 C 0.222 3.778 14 N -0.289 5.289 15 C 0.051 3.949 16 N -0.281 5.281 17 C 0.016 3.984 18 C -0.334 4.334 19 C -0.028 4.028 20 N -0.274 5.274 21 C -0.038 4.038 22 C -0.149 4.149 23 C -0.056 4.056 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.240 0.760 30 H 0.212 0.788 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.325 -11.865 6.422 16.989 hybrid contribution -0.467 0.773 0.034 0.904 sum 9.857 -11.093 6.457 16.183 Atomic orbital electron populations 1.69827 1.06151 1.26987 1.49862 1.24841 0.94708 0.98597 0.94482 0.86679 0.79969 0.83244 0.78582 1.20336 1.21653 1.18991 1.20046 0.89413 0.91403 1.49879 1.19326 0.98711 0.92776 0.91552 1.21955 0.92391 0.98593 1.02457 1.21136 0.94235 0.88838 0.90091 0.90000 1.45293 1.20154 1.45594 1.21491 1.18060 0.86349 0.85856 0.87515 1.68212 1.10600 1.28701 1.21347 1.24713 0.87798 0.85562 0.96873 1.67637 1.36379 1.21474 1.02620 1.22469 0.89816 0.93463 0.92646 1.21861 1.03081 1.07889 1.00568 1.21134 0.97977 0.92898 0.90803 1.63607 1.05154 1.04675 1.53997 1.21468 0.94382 0.99172 0.88765 1.21891 0.97169 0.95122 1.00717 1.19791 0.96534 0.95443 0.93813 0.92560 0.97538 0.92084 0.94719 0.92771 0.75992 0.78820 0.88992 0.90540 0.84263 0.89110 0.87544 0.93356 0.94578 0.96198 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 12.73 55.43 0.71 -24.44 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.86 27.53 -169.99 -4.68 16.18 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.06 6.11 56.52 0.35 -5.71 16 7 C -0.49 -12.56 5.51 -98.92 -0.55 -13.10 16 8 C 0.01 0.34 5.97 -27.49 -0.16 0.18 16 9 C -0.12 -2.30 5.40 -26.63 -0.14 -2.44 16 10 C 0.16 3.00 2.38 -67.98 -0.16 2.84 16 11 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 12 N -0.70 -10.88 5.21 -53.89 -0.28 -11.16 16 13 C 0.47 7.34 7.48 -154.78 -1.16 6.19 16 14 N -0.56 -9.35 9.37 -13.85 -0.13 -9.48 16 15 C 0.34 4.87 12.27 -92.12 -1.13 3.74 16 16 N -0.56 -8.01 10.44 -10.78 -0.11 -8.12 16 17 C 0.16 2.11 7.49 -82.23 -0.62 1.50 16 18 C -0.32 -4.29 6.24 -104.19 -0.65 -4.94 16 19 C 0.10 1.05 7.19 -4.22 -0.03 1.02 16 20 N -0.65 -5.90 7.72 -114.18 -0.88 -6.79 16 21 C 0.09 0.89 7.45 -4.15 -0.03 0.86 16 22 C -0.11 -2.25 5.52 -26.61 -0.15 -2.40 16 23 C -0.02 -0.41 5.60 -27.46 -0.15 -0.56 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 27 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.40 5.40 8.38 -40.82 -0.34 5.06 16 30 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.34 2.61 8.92 -39.29 -0.35 2.26 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.03 0.81 4.59 -51.92 -0.24 0.57 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -29.23 311.62 -11.25 -40.47 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.53 Total: 3.80 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -5.03 Total: -5.17 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.70 Total: -59.98 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.68 Total: 16.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.23 -11.25 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.448 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds