Wall clock time and date at job start Mon Mar 30 2020 01:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46950 * 269.99967 * 3 2 1 5 5 H 1.48500 * 109.47355 * 29.99877 * 3 2 1 6 6 H 1.48501 * 109.47332 * 149.99715 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 C 1.51261 * 120.85169 * 0.02562 * 7 2 1 9 9 C 1.53232 * 108.53467 * 231.32435 * 8 7 2 10 10 C 1.52954 * 109.40610 * 305.36821 * 9 8 7 11 11 H 1.09001 * 109.41489 * 303.56466 * 10 9 8 12 12 N 1.46498 * 109.41709 * 183.70544 * 10 9 8 13 13 C 1.38545 * 120.00330 * 154.99765 * 12 10 9 14 14 N 1.33148 * 120.64907 * 0.02562 * 13 12 10 15 15 C 1.31754 * 120.67939 * 179.97438 * 14 13 12 16 16 N 1.31875 * 121.97360 * 0.25119 * 15 14 13 17 17 C 1.32361 * 120.83215 * 359.47274 * 16 15 14 18 18 C 1.38182 * 119.15968 * 0.52545 * 17 16 15 19 19 C 1.50859 * 108.47331 * 179.70413 * 18 17 16 20 20 N 1.48138 * 105.63272 * 342.67789 * 19 18 17 21 21 C 1.48110 * 103.86474 * 27.29918 * 20 19 18 22 22 C 1.52960 * 109.81493 * 63.59945 * 10 9 8 23 23 C 1.51276 * 120.84972 * 179.97438 * 7 2 1 24 24 H 0.97003 * 120.00394 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.63125 * 111.60878 * 8 7 2 26 26 H 1.09001 * 109.62709 * 351.03715 * 8 7 2 27 27 H 1.09009 * 109.48301 * 185.39053 * 9 8 7 28 28 H 1.09000 * 109.48687 * 65.34982 * 9 8 7 29 29 H 0.97002 * 119.99628 * 335.00590 * 12 10 9 30 30 H 1.08002 * 119.00835 * 179.97438 * 15 14 13 31 31 H 1.08997 * 110.21373 * 101.72218 * 19 18 17 32 32 H 1.09003 * 110.21161 * 223.64268 * 19 18 17 33 33 H 1.00897 * 110.99934 * 267.94326 * 20 19 18 34 34 H 1.09006 * 110.20002 * 213.60840 * 21 20 19 35 35 H 1.08999 * 110.27385 * 91.76091 * 21 20 19 36 36 H 1.09000 * 109.48290 * 56.38351 * 22 10 9 37 37 H 1.09004 * 109.48367 * 176.42189 * 22 10 9 38 38 H 1.08997 * 109.62999 * 248.39189 * 23 7 2 39 39 H 1.09008 * 109.62384 * 8.96440 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1352 10 6 3.3400 -3.5069 0.9841 11 1 3.5741 -3.9110 -0.0008 12 7 3.8600 -4.4073 2.0160 13 6 5.0499 -5.0859 1.8079 14 7 5.7316 -4.9288 0.6750 15 6 6.8635 -5.5734 0.4766 16 7 7.3650 -6.3968 1.3763 17 6 6.7472 -6.6001 2.5291 18 6 5.5567 -5.9450 2.7796 19 6 5.0642 -6.3541 4.1456 20 7 5.8082 -7.5894 4.4847 21 6 7.0737 -7.4610 3.7261 22 6 3.9907 -2.1309 1.1351 23 6 3.5171 -1.2164 0.0000 24 1 -0.4851 0.8400 -0.0004 25 1 1.4200 -3.0193 -0.9537 26 1 0.2037 -2.3409 0.1600 27 1 1.3708 -4.3733 1.0901 28 1 1.5900 -2.9196 2.0941 29 1 3.3712 -4.5286 2.8450 30 1 7.3941 -5.4262 -0.4525 31 1 5.2803 -5.5722 4.8736 32 1 3.9934 -6.5557 4.1150 33 1 5.2962 -8.4101 4.1979 34 1 7.4189 -8.4425 3.4010 35 1 7.8348 -6.9792 4.3399 36 1 3.7064 -1.6976 2.0940 37 1 5.0749 -2.2344 1.0900 38 1 3.8773 -1.6005 -0.9544 39 1 3.8982 -0.2076 0.1591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:37 Heat of formation + Delta-G solvation = 30.815424 kcal Electronic energy + Delta-G solvation = -21075.510484 eV Core-core repulsion = 18016.551291 eV Total energy + Delta-G solvation = -3058.959193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.35688 -39.39872 -38.36301 -36.45028 -34.17219 -32.93892 -31.59626 -31.15844 -29.28399 -28.64792 -25.47040 -24.28349 -23.50520 -23.07592 -22.25820 -21.23167 -19.03651 -18.62504 -17.88675 -17.28125 -16.44169 -16.33673 -16.08850 -15.82869 -15.42619 -15.08597 -14.62300 -14.57147 -14.37873 -14.10819 -13.99610 -13.47247 -13.42632 -13.10676 -12.84115 -12.79768 -12.55840 -12.10130 -11.96704 -11.87164 -11.63616 -11.33645 -10.89875 -10.75058 -10.59221 -10.45685 -10.11032 -10.02220 -8.99519 -8.18321 -6.12450 0.00345 0.36933 1.37620 1.40829 1.48221 2.11472 2.39695 2.83630 2.86078 3.09480 3.12881 3.31668 3.58251 3.99823 4.08177 4.14834 4.20064 4.32784 4.49644 4.53017 4.67335 4.69009 4.82599 4.85833 4.90432 4.95440 5.05194 5.11397 5.22354 5.24670 5.33804 5.46394 5.55344 5.60730 5.73805 5.77066 5.86324 6.13430 6.22082 6.33395 6.66634 6.93354 7.33624 7.45841 8.92288 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.004288 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.076972 B = 6527.695496 C = 6852.795893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.253 1.253 7 C -0.497 4.497 8 C 0.010 3.990 9 C -0.102 4.102 10 C 0.179 3.821 11 H 0.065 0.935 12 N -0.694 5.694 13 C 0.449 3.551 14 N -0.594 5.594 15 C 0.330 3.670 16 N -0.568 5.568 17 C 0.151 3.849 18 C -0.319 4.319 19 C 0.105 3.895 20 N -0.643 5.643 21 C 0.098 3.902 22 C -0.100 4.100 23 C -0.019 4.019 24 H 0.263 0.737 25 H -0.001 1.001 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.416 0.584 30 H 0.219 0.781 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.352 0.648 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.018 0.982 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -13.751 8.125 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.177 1.177 7 C -0.516 4.516 8 C -0.028 4.028 9 C -0.141 4.141 10 C 0.074 3.926 11 H 0.084 0.916 12 N -0.325 5.325 13 C 0.205 3.795 14 N -0.319 5.319 15 C 0.042 3.958 16 N -0.288 5.288 17 C 0.005 3.995 18 C -0.331 4.331 19 C -0.025 4.025 20 N -0.269 5.269 21 C -0.033 4.033 22 C -0.140 4.140 23 C -0.057 4.057 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.254 0.746 30 H 0.235 0.765 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.169 0.831 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.075 -13.211 7.868 19.551 hybrid contribution -0.944 1.061 -0.436 1.486 sum 11.131 -12.150 7.432 18.076 Atomic orbital electron populations 1.69952 1.07536 1.27478 1.51999 1.25556 0.95319 1.01624 0.94857 0.85861 0.79294 0.79850 0.78610 1.20150 1.21765 1.17730 1.20603 0.90950 0.91894 1.48198 1.19280 0.97213 0.93382 0.92922 1.21713 0.93313 0.98698 1.00359 1.20623 0.93087 0.88484 0.90394 0.91637 1.44883 1.20696 1.45641 1.21276 1.18271 0.86377 0.86677 0.88210 1.68190 1.11617 1.29825 1.22256 1.25222 0.87457 0.85305 0.97852 1.67716 1.36546 1.21352 1.03141 1.23161 0.89654 0.93622 0.93035 1.22152 1.02997 1.06670 1.01310 1.21199 0.98906 0.93430 0.88982 1.63605 1.05001 1.04678 1.53593 1.21596 0.94764 0.99578 0.87364 1.21745 0.97458 0.95537 0.99230 1.19786 0.94866 0.96157 0.94886 0.92770 0.98263 0.94970 0.92640 0.92873 0.74626 0.76506 0.88596 0.89088 0.83131 0.87232 0.86631 0.93623 0.94089 0.96347 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.80 12.73 21.45 0.27 -53.52 16 2 C 0.02 1.35 5.46 84.66 0.46 1.81 16 3 Si 0.94 42.92 27.53 68.60 1.89 44.81 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.97 6.11 99.48 0.61 -10.36 16 7 C -0.50 -25.75 5.51 -16.17 -0.09 -25.84 16 8 C 0.01 0.49 5.97 30.10 0.18 0.67 16 9 C -0.10 -4.00 5.40 30.66 0.17 -3.84 16 10 C 0.18 6.52 2.38 44.96 0.11 6.63 16 11 H 0.07 2.64 7.57 -2.39 -0.02 2.62 16 12 N -0.69 -20.49 5.21 -324.41 -1.69 -22.18 16 13 C 0.45 13.36 7.48 133.02 1.00 14.35 16 14 N -0.59 -18.99 9.37 -197.74 -1.85 -20.84 16 15 C 0.33 9.02 12.27 180.87 2.22 11.24 16 16 N -0.57 -15.13 10.44 -188.03 -1.96 -17.09 16 17 C 0.15 3.58 7.49 42.57 0.32 3.90 16 18 C -0.32 -7.77 6.24 -19.58 -0.12 -7.89 16 19 C 0.11 1.84 7.19 85.37 0.61 2.46 16 20 N -0.64 -9.51 7.72 -515.16 -3.98 -13.48 16 21 C 0.10 1.56 7.45 85.42 0.64 2.19 16 22 C -0.10 -4.01 5.52 30.67 0.17 -3.84 16 23 C -0.02 -0.86 5.60 30.12 0.17 -0.70 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.03 1.73 7.07 -2.39 -0.02 1.72 16 27 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.42 10.20 8.38 -92.71 -0.78 9.42 16 30 H 0.22 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.35 4.15 8.92 -89.70 -0.80 3.35 16 34 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 1.53 4.59 -2.38 -0.01 1.52 16 Total: -1.00 -62.84 311.62 -2.09 -64.93 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.59 Total: 16.24 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.83 Total: 1.14 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -9.21 Total: -127.11 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.89 Total: 44.81 kcal Total: -62.84 -2.09 -64.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.744 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds