Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36362 * 120.08468 * 2 1 4 4 C 1.39547 * 120.16167 * 179.97438 * 3 2 1 5 5 N 1.38853 * 119.83988 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00058 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46963 * 324.99574 * 6 5 4 8 8 C 1.53006 * 109.47147 * 84.99595 * 6 5 4 9 9 C 1.52992 * 109.46861 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47565 * 299.99827 * 9 8 6 11 11 C 1.53004 * 109.46571 * 60.00388 * 10 9 8 12 12 H 1.08999 * 109.47527 * 60.00023 * 11 10 9 13 13 N 1.46907 * 109.46912 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47285 * 299.99722 * 11 10 9 15 15 C 1.39587 * 120.31695 * 0.02562 * 4 3 2 16 16 C 1.36318 * 120.15874 * 0.27963 * 15 4 3 17 17 C 1.40873 * 120.07999 * 179.97438 * 2 1 3 18 18 C 1.41132 * 120.15702 * 359.97438 * 17 2 1 19 19 H 1.08002 * 120.00113 * 25.50948 * 18 17 2 20 20 C 1.39866 * 120.00041 * 205.50903 * 18 17 2 21 21 N 1.30904 * 120.00053 * 15.27819 * 20 18 17 22 22 Si 1.86797 * 119.99873 * 195.27859 * 20 18 17 23 23 H 1.48496 * 109.47308 * 90.00016 * 22 20 18 24 24 H 1.48505 * 109.47197 * 210.00113 * 22 20 18 25 25 H 1.48506 * 109.47423 * 329.99993 * 22 20 18 26 26 H 1.08996 * 109.47440 * 89.99062 * 1 2 3 27 27 H 1.09002 * 109.47043 * 209.99552 * 1 2 3 28 28 H 1.09006 * 109.46983 * 329.99238 * 1 2 3 29 29 H 1.07998 * 119.91223 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00033 * 359.97325 * 5 4 3 31 31 H 1.08998 * 109.47062 * 300.00583 * 8 6 5 32 32 H 1.09006 * 109.46969 * 60.00399 * 8 6 5 33 33 H 1.08993 * 109.47222 * 60.00532 * 9 8 6 34 34 H 1.09007 * 109.47027 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47041 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47177 * 300.00196 * 10 9 8 37 37 H 1.00903 * 110.99812 * 300.00237 * 13 11 10 38 38 H 1.00901 * 110.99362 * 63.94962 * 13 11 10 39 39 H 1.09003 * 109.47563 * 300.00662 * 14 11 10 40 40 H 1.08998 * 109.47545 * 180.02562 * 14 11 10 41 41 H 1.08001 * 119.92085 * 179.97438 * 15 4 3 42 42 H 1.08007 * 120.08024 * 179.72145 * 16 15 4 43 43 H 0.97003 * 119.99993 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 0.0005 5 7 4.2753 2.3872 0.0011 6 6 5.7402 2.3932 0.0022 7 1 6.1066 1.5530 0.5920 8 6 6.2519 2.2695 -1.4344 9 6 7.7818 2.2765 -1.4332 10 6 8.2855 3.5863 -0.8236 11 6 7.7738 3.7099 0.6131 12 1 8.1405 2.8699 1.2030 13 7 8.2568 4.9678 1.1984 14 6 6.2439 3.7030 0.6120 15 6 4.2922 -0.0222 0.0005 16 6 3.6221 -1.2093 -0.0057 17 6 2.2130 -1.2190 0.0005 18 6 1.5124 -2.4442 0.0016 19 1 0.5114 -2.4942 -0.4007 20 6 2.1145 -3.5936 0.5238 21 7 3.1832 -3.4901 1.2725 22 14 1.3933 -5.2763 0.1528 23 1 2.0098 -5.8170 -1.0852 24 1 1.6713 -6.1948 1.2861 25 1 -0.0745 -5.1549 -0.0374 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6505 2.1152 -0.0004 30 1 3.7868 3.2252 0.0007 31 1 5.8927 1.3367 -1.8690 32 1 5.8856 3.1099 -2.0242 33 1 8.1485 1.4365 -0.8434 34 1 8.1464 2.1879 -2.4567 35 1 9.3754 3.5910 -0.8223 36 1 7.9188 4.4263 -1.4135 37 1 9.2654 4.9972 1.2104 38 1 7.8777 5.7638 0.7078 39 1 5.8771 4.5430 0.0221 40 1 5.8793 3.7915 1.6354 41 1 5.3722 -0.0133 0.0005 42 1 4.1698 -2.1402 -0.0103 43 1 3.6006 -4.2872 1.6350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162402223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -2.782367 kcal Electronic energy + Delta-G solvation = -21106.174622 eV Core-core repulsion = 18149.298863 eV Total energy + Delta-G solvation = -2956.875759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.24297 -37.75080 -35.13422 -33.37536 -32.61056 -31.05252 -29.92316 -28.13057 -27.53882 -25.93182 -24.06658 -22.34662 -21.62570 -20.90253 -19.94648 -18.92379 -17.05541 -16.35915 -15.89243 -15.40744 -14.94662 -14.51368 -14.35443 -13.90908 -13.69500 -13.52114 -13.03468 -12.73150 -12.56139 -12.39703 -12.33387 -11.78468 -11.53396 -11.23489 -11.14965 -11.05488 -11.02678 -11.02456 -10.91118 -10.58046 -10.53888 -10.35440 -10.21982 -9.51003 -9.19223 -9.14809 -8.82928 -8.42707 -7.28611 -6.57809 -6.31819 -3.99429 2.93581 3.11030 3.17030 3.20128 3.39321 4.07800 4.13315 4.43350 4.68518 4.80463 4.88160 5.09985 5.19546 5.24456 5.47296 5.49680 5.53658 5.66646 5.80539 5.90157 5.99018 6.04913 6.12121 6.27360 6.28243 6.31212 6.45639 6.49022 6.57449 6.74375 6.78717 6.95792 6.97751 7.08308 7.24651 7.27106 7.40873 7.67498 7.80045 7.88336 8.19559 8.36875 8.54606 8.75860 8.84914 9.10832 9.20577 10.42239 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.004030 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.555537 B = 6946.767503 C = 7531.444134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.160 4.160 4 C 0.100 3.900 5 N -0.756 5.756 6 C 0.167 3.833 7 H 0.073 0.927 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.151 4.151 11 C 0.093 3.907 12 H 0.082 0.918 13 N -0.845 5.845 14 C -0.116 4.116 15 C -0.169 4.169 16 C -0.121 4.121 17 C 0.076 3.924 18 C -0.462 4.462 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.810 5.810 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.382 0.618 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.339 0.661 38 H 0.337 0.663 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.411 11.074 -3.100 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.003 3.997 5 N -0.389 5.389 6 C 0.059 3.941 7 H 0.091 0.909 8 C -0.174 4.174 9 C -0.153 4.153 10 C -0.191 4.191 11 C -0.019 4.019 12 H 0.100 0.900 13 N -0.373 5.373 14 C -0.154 4.154 15 C -0.191 4.191 16 C -0.141 4.141 17 C 0.073 3.927 18 C -0.494 4.494 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.438 5.438 22 Si 0.728 3.272 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.189 1.189 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.215 0.785 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.340 10.593 -2.258 13.670 hybrid contribution 0.090 -0.326 -1.101 1.152 sum 8.430 10.266 -3.359 13.702 Atomic orbital electron populations 1.20413 0.93762 1.00464 0.99551 1.19298 0.94106 0.92772 1.09834 1.19651 0.91555 0.96384 1.10588 1.17331 0.90553 0.85165 1.06682 1.43911 1.03012 1.05180 1.86845 1.20508 0.82149 0.96817 0.94605 0.90939 1.22090 0.94214 1.02569 0.98549 1.21441 0.96302 0.97069 1.00532 1.22408 1.00014 0.98821 0.97809 1.21420 0.95091 0.92718 0.92628 0.89967 1.58923 1.13596 1.04087 1.60700 1.21768 0.94097 0.97758 1.01804 1.20109 0.97094 0.91989 1.09878 1.20965 0.94655 0.96144 1.02291 1.17350 0.91645 0.91579 0.92119 1.19375 1.01519 0.92534 1.35925 0.90787 1.25792 0.94509 1.00824 0.92995 1.69847 1.18602 1.30814 1.24542 0.86417 0.80311 0.81864 0.78646 1.19647 1.20627 1.18898 0.94084 0.91960 0.94553 0.89697 0.78548 0.91141 0.92478 0.91778 0.92209 0.92411 0.92256 0.84872 0.85042 0.92249 0.90847 0.89382 0.86309 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.39 36.00 0.34 -1.47 16 2 C -0.16 -3.87 5.90 -104.30 -0.62 -4.48 16 3 C -0.16 -3.61 9.46 -39.77 -0.38 -3.98 16 4 C 0.10 2.17 6.65 -83.69 -0.56 1.61 16 5 N -0.76 -13.12 5.22 -52.03 -0.27 -13.39 16 6 C 0.17 2.46 2.14 -67.93 -0.15 2.31 16 7 H 0.07 1.21 6.45 -51.93 -0.33 0.87 16 8 C -0.13 -1.84 5.41 -26.73 -0.14 -1.99 16 9 C -0.11 -1.28 5.92 -26.73 -0.16 -1.43 16 10 C -0.15 -1.44 5.49 -26.73 -0.15 -1.58 16 11 C 0.09 0.97 3.25 -67.71 -0.22 0.75 16 12 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 13 N -0.85 -7.70 9.25 -4.66 -0.04 -7.74 16 14 C -0.12 -1.41 4.93 -26.73 -0.13 -1.54 16 15 C -0.17 -3.95 8.74 -39.77 -0.35 -4.30 16 16 C -0.12 -3.17 8.62 -39.26 -0.34 -3.50 16 17 C 0.08 2.04 5.57 -106.79 -0.59 1.45 16 18 C -0.46 -12.43 8.12 -37.88 -0.31 -12.74 16 19 H 0.07 1.92 6.84 -52.49 -0.36 1.56 16 20 C 0.07 1.89 5.18 -17.34 -0.09 1.80 16 21 N -0.81 -21.57 10.88 55.54 0.60 -20.97 16 22 Si 0.90 19.33 29.59 -169.99 -5.03 14.31 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.36 6.76 -51.93 -0.35 1.01 16 28 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.38 6.02 8.60 -40.82 -0.35 5.67 16 31 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.34 2.52 9.04 -39.29 -0.36 2.17 16 38 H 0.34 2.70 8.98 -39.29 -0.35 2.34 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.89 6.04 -52.49 -0.32 1.58 16 42 H 0.12 3.25 6.15 -52.48 -0.32 2.92 16 43 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -27.87 335.28 -10.45 -38.32 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.92 Total: 13.51 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -3.84 Total: -29.09 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.29 Total: -42.10 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.87 -10.45 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162402223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.536 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds