Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36362 * 120.08468 * 2 1 4 4 C 1.39547 * 120.16167 * 179.97438 * 3 2 1 5 5 N 1.38853 * 119.83988 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00058 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46963 * 324.99574 * 6 5 4 8 8 C 1.53006 * 109.47147 * 84.99595 * 6 5 4 9 9 C 1.52992 * 109.46861 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47565 * 299.99827 * 9 8 6 11 11 C 1.53004 * 109.46571 * 60.00388 * 10 9 8 12 12 H 1.08999 * 109.47527 * 60.00023 * 11 10 9 13 13 N 1.46907 * 109.46912 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47285 * 299.99722 * 11 10 9 15 15 C 1.39587 * 120.31695 * 0.02562 * 4 3 2 16 16 C 1.36318 * 120.15874 * 0.27963 * 15 4 3 17 17 C 1.40873 * 120.07999 * 179.97438 * 2 1 3 18 18 C 1.41132 * 120.15702 * 359.97438 * 17 2 1 19 19 H 1.08002 * 120.00113 * 25.50948 * 18 17 2 20 20 C 1.39866 * 120.00041 * 205.50903 * 18 17 2 21 21 N 1.30904 * 120.00053 * 15.27819 * 20 18 17 22 22 Si 1.86797 * 119.99873 * 195.27859 * 20 18 17 23 23 H 1.48496 * 109.47308 * 90.00016 * 22 20 18 24 24 H 1.48505 * 109.47197 * 210.00113 * 22 20 18 25 25 H 1.48506 * 109.47423 * 329.99993 * 22 20 18 26 26 H 1.08996 * 109.47440 * 89.99062 * 1 2 3 27 27 H 1.09002 * 109.47043 * 209.99552 * 1 2 3 28 28 H 1.09006 * 109.46983 * 329.99238 * 1 2 3 29 29 H 1.07998 * 119.91223 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00033 * 359.97325 * 5 4 3 31 31 H 1.08998 * 109.47062 * 300.00583 * 8 6 5 32 32 H 1.09006 * 109.46969 * 60.00399 * 8 6 5 33 33 H 1.08993 * 109.47222 * 60.00532 * 9 8 6 34 34 H 1.09007 * 109.47027 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47041 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47177 * 300.00196 * 10 9 8 37 37 H 1.00903 * 110.99812 * 300.00237 * 13 11 10 38 38 H 1.00901 * 110.99362 * 63.94962 * 13 11 10 39 39 H 1.09003 * 109.47563 * 300.00662 * 14 11 10 40 40 H 1.08998 * 109.47545 * 180.02562 * 14 11 10 41 41 H 1.08001 * 119.92085 * 179.97438 * 15 4 3 42 42 H 1.08007 * 120.08024 * 179.72145 * 16 15 4 43 43 H 0.97003 * 119.99993 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 0.0005 5 7 4.2753 2.3872 0.0011 6 6 5.7402 2.3932 0.0022 7 1 6.1066 1.5530 0.5920 8 6 6.2519 2.2695 -1.4344 9 6 7.7818 2.2765 -1.4332 10 6 8.2855 3.5863 -0.8236 11 6 7.7738 3.7099 0.6131 12 1 8.1405 2.8699 1.2030 13 7 8.2568 4.9678 1.1984 14 6 6.2439 3.7030 0.6120 15 6 4.2922 -0.0222 0.0005 16 6 3.6221 -1.2093 -0.0057 17 6 2.2130 -1.2190 0.0005 18 6 1.5124 -2.4442 0.0016 19 1 0.5114 -2.4942 -0.4007 20 6 2.1145 -3.5936 0.5238 21 7 3.1832 -3.4901 1.2725 22 14 1.3933 -5.2763 0.1528 23 1 2.0098 -5.8170 -1.0852 24 1 1.6713 -6.1948 1.2861 25 1 -0.0745 -5.1549 -0.0374 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6505 2.1152 -0.0004 30 1 3.7868 3.2252 0.0007 31 1 5.8927 1.3367 -1.8690 32 1 5.8856 3.1099 -2.0242 33 1 8.1485 1.4365 -0.8434 34 1 8.1464 2.1879 -2.4567 35 1 9.3754 3.5910 -0.8223 36 1 7.9188 4.4263 -1.4135 37 1 9.2654 4.9972 1.2104 38 1 7.8777 5.7638 0.7078 39 1 5.8771 4.5430 0.0221 40 1 5.8793 3.7915 1.6354 41 1 5.3722 -0.0133 0.0005 42 1 4.1698 -2.1402 -0.0103 43 1 3.6006 -4.2872 1.6350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162402223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = -19.298899 kcal Electronic energy + Delta-G solvation = -21106.890832 eV Core-core repulsion = 18149.298863 eV Total energy + Delta-G solvation = -2957.591970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.49796 -39.33406 -36.58965 -34.99230 -33.82336 -32.75229 -31.43716 -29.53029 -28.72652 -27.60963 -25.89872 -23.45748 -22.85361 -22.58025 -21.02568 -20.56346 -18.98293 -17.77153 -16.99008 -16.76119 -16.56078 -15.88770 -15.45869 -15.30494 -15.06758 -14.64035 -14.43560 -14.39168 -14.14855 -13.66610 -13.54210 -13.40721 -13.23763 -12.83277 -12.75124 -12.69858 -12.59775 -12.20993 -12.14501 -12.07544 -11.64413 -11.56842 -11.46817 -11.30994 -11.03701 -10.98592 -10.17273 -9.55098 -9.16717 -8.48087 -8.09899 -5.95281 1.12605 1.22096 1.40743 1.52681 1.61090 2.28933 2.83184 2.89622 3.55927 3.75997 3.86370 3.96268 4.15669 4.21438 4.26658 4.40829 4.49063 4.52674 4.55481 4.56275 4.70500 4.78287 4.92835 5.00938 5.06538 5.07776 5.09446 5.16670 5.19924 5.26788 5.33839 5.35399 5.39133 5.49135 5.54993 5.79504 5.95214 6.01251 6.25527 6.26993 6.47718 6.64639 6.72608 6.93069 7.14857 7.20930 7.37272 8.53732 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.004030 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.555537 B = 6946.767503 C = 7531.444134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.172 4.172 4 C 0.119 3.881 5 N -0.747 5.747 6 C 0.164 3.836 7 H 0.050 0.950 8 C -0.128 4.128 9 C -0.112 4.112 10 C -0.141 4.141 11 C 0.098 3.902 12 H 0.069 0.931 13 N -0.849 5.849 14 C -0.105 4.105 15 C -0.181 4.181 16 C -0.142 4.142 17 C 0.035 3.965 18 C -0.493 4.493 19 H 0.072 0.928 20 C 0.029 3.971 21 N -0.847 5.847 22 Si 0.973 3.027 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.259 1.259 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.395 0.605 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.351 0.649 38 H 0.346 0.654 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 13.156 -3.646 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.194 4.194 4 C 0.020 3.980 5 N -0.380 5.380 6 C 0.058 3.942 7 H 0.068 0.932 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.181 4.181 11 C -0.014 4.014 12 H 0.088 0.912 13 N -0.379 5.379 14 C -0.144 4.144 15 C -0.203 4.203 16 C -0.163 4.163 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.090 0.910 20 C -0.182 4.182 21 N -0.476 5.476 22 Si 0.796 3.204 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.183 1.183 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.229 0.771 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.769 12.731 -2.809 15.712 hybrid contribution 0.034 -0.771 -0.929 1.208 sum 8.803 11.959 -3.737 15.313 Atomic orbital electron populations 1.20398 0.91676 1.01055 1.00601 1.19766 0.95979 0.92646 1.08406 1.19974 0.92003 0.97024 1.10417 1.17443 0.90784 0.86159 1.03642 1.43980 1.04251 1.04175 1.85589 1.20643 0.80478 0.97726 0.95399 0.93225 1.21977 0.96188 1.01301 0.97250 1.21424 0.94207 0.98073 1.01411 1.22334 1.01052 0.97870 0.96812 1.21272 0.93665 0.93145 0.93310 0.91230 1.58848 1.14638 1.03683 1.60732 1.21643 0.95476 0.96339 1.00904 1.20198 0.97727 0.91993 1.10414 1.20898 0.94937 0.96296 1.04136 1.17692 0.92137 0.92855 0.94134 1.19578 1.01871 0.93675 1.37368 0.90953 1.26595 0.94862 1.04352 0.92378 1.69932 1.20067 1.31909 1.25674 0.85335 0.79593 0.76996 0.78518 1.19218 1.19862 1.18300 0.92684 0.93260 0.91981 0.86769 0.77108 0.94121 0.91583 0.92492 0.91045 0.90649 0.91213 0.83556 0.84039 0.90711 0.92102 0.88366 0.88554 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.36 9.39 71.23 0.67 -2.69 16 2 C -0.17 -8.16 5.90 -19.66 -0.12 -8.27 16 3 C -0.17 -7.59 9.46 22.15 0.21 -7.38 16 4 C 0.12 5.14 6.65 38.67 0.26 5.40 16 5 N -0.75 -24.86 5.22 -318.53 -1.66 -26.52 16 6 C 0.16 4.68 2.14 44.99 0.10 4.77 16 7 H 0.05 1.67 6.45 -2.39 -0.02 1.65 16 8 C -0.13 -3.34 5.41 30.59 0.17 -3.18 16 9 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 10 C -0.14 -2.25 5.49 30.60 0.17 -2.08 16 11 C 0.10 1.83 3.25 44.91 0.15 1.97 16 12 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 13 N -0.85 -13.03 9.25 -168.67 -1.56 -14.60 16 14 C -0.11 -2.33 4.93 30.59 0.15 -2.18 16 15 C -0.18 -8.73 8.74 22.15 0.19 -8.54 16 16 C -0.14 -7.85 8.62 22.48 0.19 -7.66 16 17 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 18 C -0.49 -27.52 8.12 23.37 0.19 -27.33 16 19 H 0.07 3.89 6.84 -2.91 -0.02 3.87 16 20 C 0.03 1.54 5.18 85.23 0.44 1.99 16 21 N -0.85 -47.09 10.88 21.82 0.24 -46.85 16 22 Si 0.97 40.69 29.59 68.60 2.03 42.72 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 2.16 6.76 -2.39 -0.02 2.14 16 28 H 0.06 2.22 8.08 -2.38 -0.02 2.20 16 29 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.39 11.42 8.60 -92.71 -0.80 10.62 16 31 H 0.04 1.30 7.66 -2.39 -0.02 1.28 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.35 4.16 9.04 -89.69 -0.81 3.35 16 38 H 0.35 4.37 8.98 -89.69 -0.81 3.57 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 4.40 6.04 -2.91 -0.02 4.38 16 42 H 0.10 5.63 6.15 -2.91 -0.02 5.62 16 43 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 Total: -1.00 -62.42 335.28 0.49 -61.93 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -1.38 Total: 38.82 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.83 Total: -55.50 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -2.98 Total: -87.97 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -62.42 0.49 -61.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162402223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.629 kcal (2) G-P(sol) polarization free energy of solvation -62.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds