Wall clock time and date at job start Mon Mar 30 2020 01:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47310 * 270.00130 * 3 2 1 5 5 H 1.48495 * 109.47323 * 30.00195 * 3 2 1 6 6 H 1.48501 * 109.46760 * 150.00290 * 3 2 1 7 7 C 1.40043 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.41145 * 119.99927 * 0.02562 * 7 2 1 10 10 N 1.33595 * 119.17580 * 180.02562 * 9 7 2 11 11 C 1.31663 * 120.79755 * 179.97438 * 10 9 7 12 12 C 1.40082 * 119.13291 * 0.02562 * 11 10 9 13 13 N 1.38804 * 120.75799 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00536 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.58320 * 323.72747 * 14 13 12 16 16 C 1.55051 * 110.52836 * 86.45504 * 14 13 12 17 17 C 1.55050 * 102.13569 * 158.74979 * 16 14 13 18 18 C 1.54304 * 103.95941 * 319.87152 * 17 16 14 19 19 H 1.09004 * 111.87465 * 262.50247 * 18 17 16 20 20 C 1.54304 * 108.80037 * 138.35898 * 18 17 16 21 21 N 1.50179 * 103.89818 * 223.33386 * 20 18 17 22 22 C 1.48521 * 104.77236 * 38.70480 * 21 20 18 23 23 C 1.54302 * 104.69555 * 320.75916 * 22 21 20 24 24 H 1.09004 * 111.90324 * 262.33821 * 23 22 21 25 25 C 1.40083 * 118.48767 * 0.27078 * 12 11 10 26 26 N 1.31665 * 119.13395 * 359.46384 * 25 12 11 27 27 H 0.97003 * 119.99971 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.43078 * 179.97438 * 11 10 9 29 29 H 0.97006 * 119.99299 * 0.02562 * 13 12 11 30 30 H 1.09002 * 110.90582 * 40.52862 * 16 14 13 31 31 H 1.09003 * 110.90548 * 276.96930 * 16 14 13 32 32 H 1.08995 * 110.53150 * 78.49535 * 17 16 14 33 33 H 1.08999 * 110.52618 * 201.11625 * 17 16 14 34 34 H 1.08991 * 110.39183 * 341.55791 * 20 18 17 35 35 H 1.08994 * 110.39066 * 103.95754 * 20 18 17 36 36 H 1.00898 * 111.09375 * 158.63362 * 21 20 18 37 37 H 1.09001 * 110.39143 * 201.96407 * 22 21 20 38 38 H 1.08997 * 110.49586 * 79.61615 * 22 21 20 39 39 H 1.07993 * 120.42932 * 179.73036 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0465 -1.4000 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3018 -2.4352 -0.0016 10 7 1.9864 -3.5824 -0.0016 11 6 1.3606 -4.7408 -0.0021 12 6 -0.0401 -4.7593 -0.0032 13 7 -0.7342 -5.9613 -0.0043 14 6 -2.1991 -5.9614 -0.0049 15 1 -2.5826 -5.1392 0.5992 16 6 -2.7422 -5.8707 -1.4543 17 6 -4.1797 -6.4309 -1.2994 18 6 -4.0150 -7.6130 -0.3214 19 1 -3.9437 -8.5664 -0.8449 20 6 -5.1863 -7.5942 0.6830 21 7 -4.5314 -7.8705 2.0060 22 6 -3.2483 -7.1241 1.9567 23 6 -2.7418 -7.3115 0.5112 24 1 -2.0075 -8.1138 0.4385 25 6 -0.7244 -3.5370 -0.0096 26 7 -0.0341 -2.4158 -0.0035 27 1 -0.4850 0.8401 0.0004 28 1 1.9199 -5.6646 -0.0025 29 1 -0.2491 -6.8014 -0.0039 30 1 -2.1535 -6.4913 -2.1298 31 1 -2.7629 -4.8364 -1.7979 32 1 -4.8413 -5.6747 -0.8772 33 1 -4.5605 -6.7772 -2.2602 34 1 -5.6613 -6.6133 0.6942 35 1 -5.9134 -8.3667 0.4330 36 1 -5.1071 -7.5499 2.7701 37 1 -2.5362 -7.5455 2.6662 38 1 -3.4131 -6.0674 2.1674 39 1 -1.8041 -3.5146 -0.0150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163262484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:01 Heat of formation + Delta-G solvation = 53.613717 kcal Electronic energy + Delta-G solvation = -20904.608463 eV Core-core repulsion = 17846.637878 eV Total energy + Delta-G solvation = -3057.970585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00381 -38.79207 -35.62080 -33.81649 -32.98848 -31.69394 -30.27704 -28.52438 -28.06912 -25.78336 -24.40726 -22.88086 -21.72754 -21.42233 -20.39697 -19.20491 -17.77628 -16.78221 -16.57264 -15.67975 -15.32070 -15.04285 -14.50610 -14.29046 -14.16083 -13.75602 -13.15836 -12.73811 -12.62069 -12.58283 -12.20939 -11.99649 -11.68619 -11.41167 -11.18803 -11.15143 -10.97217 -10.70660 -10.66284 -10.62881 -10.49499 -10.17113 -9.75027 -9.35216 -9.15789 -8.89559 -8.71445 -7.24283 -6.74630 -6.39012 -4.35098 2.75934 2.93372 3.13581 3.17655 3.21893 4.00430 4.03312 4.13897 4.43580 4.61022 4.66781 4.79248 5.03436 5.27637 5.31759 5.35785 5.42449 5.46620 5.58751 5.68746 5.74457 5.80862 5.85261 5.94801 5.97747 5.99471 6.03257 6.20369 6.28070 6.31336 6.39929 6.50833 6.53782 7.10916 7.11240 7.19237 7.41209 8.18736 8.29988 8.54275 8.59613 8.76836 9.24035 10.26085 10.41771 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.003932 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741863 B = 7119.422371 C = 7375.799014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.415 4.415 8 H 0.088 0.912 9 C 0.369 3.631 10 N -0.567 5.567 11 C 0.101 3.899 12 C -0.037 4.037 13 N -0.743 5.743 14 C 0.168 3.832 15 H 0.076 0.924 16 C -0.141 4.141 17 C -0.121 4.121 18 C -0.091 4.091 19 H 0.084 0.916 20 C 0.039 3.961 21 N -0.673 5.673 22 C 0.042 3.958 23 C -0.095 4.095 24 H 0.088 0.912 25 C 0.100 3.900 26 N -0.476 5.476 27 H 0.271 0.729 28 H 0.125 0.875 29 H 0.385 0.615 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.334 0.666 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -11.318 0.235 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.155 4.155 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.452 4.452 8 H 0.106 0.894 9 C 0.128 3.872 10 N -0.285 5.285 11 C -0.073 4.073 12 C -0.142 4.142 13 N -0.378 5.378 14 C 0.060 3.940 15 H 0.094 0.906 16 C -0.180 4.180 17 C -0.159 4.159 18 C -0.110 4.110 19 H 0.103 0.897 20 C -0.090 4.090 21 N -0.301 5.301 22 C -0.087 4.087 23 C -0.115 4.115 24 H 0.106 0.894 25 C -0.076 4.076 26 N -0.192 5.192 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.218 0.782 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.148 0.852 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.744 -10.813 0.123 14.556 hybrid contribution -0.388 0.426 0.081 0.582 sum -10.133 -10.387 0.204 14.512 Atomic orbital electron populations 1.70147 1.07117 1.27566 1.30277 1.25989 0.94917 1.00990 0.93649 0.86231 0.80362 0.80477 0.79139 1.19486 1.20254 1.18515 1.19085 0.94456 0.87667 1.43981 0.89376 1.19800 0.85591 0.90705 0.91121 1.68544 1.40520 0.98128 1.21355 1.22182 0.89175 0.96330 0.99624 1.19187 0.93382 0.87768 1.13830 1.43594 1.02766 1.04573 1.86917 1.21667 0.81891 0.95548 0.94904 0.90612 1.23131 0.94980 1.01499 0.98438 1.22540 0.97622 0.96805 0.98951 1.22502 0.93817 0.99088 0.95634 0.89737 1.23365 0.96332 0.99783 0.89557 1.63952 1.05404 1.56600 1.04161 1.23019 0.92003 0.96487 0.97195 1.22757 0.97028 0.97705 0.93962 0.89358 1.22674 0.98837 0.87382 0.98747 1.69280 1.08422 1.25776 1.15741 0.91817 0.85711 0.78198 0.91220 0.91257 0.91476 0.91666 0.93677 0.90334 0.85172 0.90248 0.93666 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.67 11.41 55.55 0.63 -19.04 16 2 C 0.07 1.81 5.50 -17.35 -0.10 1.71 16 3 Si 0.91 19.17 29.56 -169.99 -5.02 14.15 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.41 -11.72 9.35 -37.80 -0.35 -12.07 16 8 H 0.09 2.41 7.85 -52.49 -0.41 2.00 16 9 C 0.37 10.62 7.35 -158.22 -1.16 9.46 16 10 N -0.57 -15.20 10.34 -12.49 -0.13 -15.33 16 11 C 0.10 2.30 11.20 -16.93 -0.19 2.11 16 12 C -0.04 -0.78 6.72 -83.32 -0.56 -1.34 16 13 N -0.74 -11.96 5.34 -50.03 -0.27 -12.23 16 14 C 0.17 2.32 2.34 -66.12 -0.15 2.16 16 15 H 0.08 1.17 5.74 -51.93 -0.30 0.87 16 16 C -0.14 -1.84 6.59 -24.56 -0.16 -2.01 16 17 C -0.12 -1.26 6.34 -24.97 -0.16 -1.42 16 18 C -0.09 -0.92 3.88 -88.15 -0.34 -1.26 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 20 C 0.04 0.36 7.16 -1.30 -0.01 0.35 16 21 N -0.67 -6.92 7.63 -108.51 -0.83 -7.75 16 22 C 0.04 0.48 7.03 -2.25 -0.02 0.46 16 23 C -0.09 -1.09 3.62 -88.10 -0.32 -1.40 16 24 H 0.09 1.00 7.83 -51.93 -0.41 0.60 16 25 C 0.10 2.38 10.48 -16.93 -0.18 2.20 16 26 N -0.48 -13.27 7.84 -12.49 -0.10 -13.36 16 27 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 28 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.38 5.48 8.43 -40.82 -0.34 5.14 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.69 7.20 -51.93 -0.37 0.32 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.41 7.19 -51.93 -0.37 0.04 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.33 2.94 8.94 -39.29 -0.35 2.58 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.54 7.19 -51.93 -0.37 0.17 16 39 H 0.12 2.64 6.43 -52.49 -0.34 2.30 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -30.56 312.98 -10.06 -40.62 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.36 Total: 9.27 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.70 Total: -1.04 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.69 Total: -67.72 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.56 -10.06 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163262484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.229 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds