Wall clock time and date at job start Mon Mar 30 2020 01:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47310 * 270.00130 * 3 2 1 5 5 H 1.48495 * 109.47323 * 30.00195 * 3 2 1 6 6 H 1.48501 * 109.46760 * 150.00290 * 3 2 1 7 7 C 1.40043 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.41145 * 119.99927 * 0.02562 * 7 2 1 10 10 N 1.33595 * 119.17580 * 180.02562 * 9 7 2 11 11 C 1.31663 * 120.79755 * 179.97438 * 10 9 7 12 12 C 1.40082 * 119.13291 * 0.02562 * 11 10 9 13 13 N 1.38804 * 120.75799 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00536 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.58320 * 323.72747 * 14 13 12 16 16 C 1.55051 * 110.52836 * 86.45504 * 14 13 12 17 17 C 1.55050 * 102.13569 * 158.74979 * 16 14 13 18 18 C 1.54304 * 103.95941 * 319.87152 * 17 16 14 19 19 H 1.09004 * 111.87465 * 262.50247 * 18 17 16 20 20 C 1.54304 * 108.80037 * 138.35898 * 18 17 16 21 21 N 1.50179 * 103.89818 * 223.33386 * 20 18 17 22 22 C 1.48521 * 104.77236 * 38.70480 * 21 20 18 23 23 C 1.54302 * 104.69555 * 320.75916 * 22 21 20 24 24 H 1.09004 * 111.90324 * 262.33821 * 23 22 21 25 25 C 1.40083 * 118.48767 * 0.27078 * 12 11 10 26 26 N 1.31665 * 119.13395 * 359.46384 * 25 12 11 27 27 H 0.97003 * 119.99971 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.43078 * 179.97438 * 11 10 9 29 29 H 0.97006 * 119.99299 * 0.02562 * 13 12 11 30 30 H 1.09002 * 110.90582 * 40.52862 * 16 14 13 31 31 H 1.09003 * 110.90548 * 276.96930 * 16 14 13 32 32 H 1.08995 * 110.53150 * 78.49535 * 17 16 14 33 33 H 1.08999 * 110.52618 * 201.11625 * 17 16 14 34 34 H 1.08991 * 110.39183 * 341.55791 * 20 18 17 35 35 H 1.08994 * 110.39066 * 103.95754 * 20 18 17 36 36 H 1.00898 * 111.09375 * 158.63362 * 21 20 18 37 37 H 1.09001 * 110.39143 * 201.96407 * 22 21 20 38 38 H 1.08997 * 110.49586 * 79.61615 * 22 21 20 39 39 H 1.07993 * 120.42932 * 179.73036 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0465 -1.4000 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3018 -2.4352 -0.0016 10 7 1.9864 -3.5824 -0.0016 11 6 1.3606 -4.7408 -0.0021 12 6 -0.0401 -4.7593 -0.0032 13 7 -0.7342 -5.9613 -0.0043 14 6 -2.1991 -5.9614 -0.0049 15 1 -2.5826 -5.1392 0.5992 16 6 -2.7422 -5.8707 -1.4543 17 6 -4.1797 -6.4309 -1.2994 18 6 -4.0150 -7.6130 -0.3214 19 1 -3.9437 -8.5664 -0.8449 20 6 -5.1863 -7.5942 0.6830 21 7 -4.5314 -7.8705 2.0060 22 6 -3.2483 -7.1241 1.9567 23 6 -2.7418 -7.3115 0.5112 24 1 -2.0075 -8.1138 0.4385 25 6 -0.7244 -3.5370 -0.0096 26 7 -0.0341 -2.4158 -0.0035 27 1 -0.4850 0.8401 0.0004 28 1 1.9199 -5.6646 -0.0025 29 1 -0.2491 -6.8014 -0.0039 30 1 -2.1535 -6.4913 -2.1298 31 1 -2.7629 -4.8364 -1.7979 32 1 -4.8413 -5.6747 -0.8772 33 1 -4.5605 -6.7772 -2.2602 34 1 -5.6613 -6.6133 0.6942 35 1 -5.9134 -8.3667 0.4330 36 1 -5.1071 -7.5499 2.7701 37 1 -2.5362 -7.5455 2.6662 38 1 -3.4131 -6.0674 2.1674 39 1 -1.8041 -3.5146 -0.0150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163262484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:01 Heat of formation + Delta-G solvation = 31.754047 kcal Electronic energy + Delta-G solvation = -20905.556370 eV Core-core repulsion = 17846.637878 eV Total energy + Delta-G solvation = -3058.918491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19737 -40.46842 -36.96975 -35.43480 -34.39399 -33.66134 -31.57920 -30.05181 -29.04304 -27.39233 -25.79813 -24.64012 -23.14024 -22.59471 -21.60407 -20.20712 -19.70168 -18.14576 -17.87845 -17.08870 -16.82696 -16.54221 -16.03173 -15.56715 -15.35063 -15.00244 -14.77582 -14.42182 -13.98774 -13.59856 -13.42156 -13.13934 -12.98366 -12.90446 -12.81870 -12.56180 -12.40513 -11.93843 -11.87516 -11.70555 -11.58615 -11.48660 -11.37883 -11.23181 -11.12793 -10.67676 -9.54730 -9.21859 -8.47363 -8.30835 -6.32210 0.87979 1.03028 1.42609 1.53790 1.58211 2.27121 2.77779 2.85431 3.20967 3.49839 3.68502 3.75614 3.98812 4.00454 4.09774 4.16980 4.33819 4.37998 4.38454 4.43303 4.46126 4.52055 4.68460 4.72461 4.81089 4.83835 5.02884 5.04300 5.15852 5.17207 5.19699 5.24249 5.37203 5.42215 5.60967 5.69875 6.24395 6.36331 6.55332 6.60497 6.80505 7.10386 7.34076 8.30585 8.51538 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.003932 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741863 B = 7119.422371 C = 7375.799014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.027 3.973 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.337 3.663 10 N -0.588 5.588 11 C 0.084 3.916 12 C -0.001 4.001 13 N -0.728 5.728 14 C 0.163 3.837 15 H 0.060 0.940 16 C -0.140 4.140 17 C -0.112 4.112 18 C -0.086 4.086 19 H 0.097 0.903 20 C 0.039 3.961 21 N -0.676 5.676 22 C 0.043 3.957 23 C -0.088 4.088 24 H 0.096 0.904 25 C 0.077 3.923 26 N -0.506 5.506 27 H 0.278 0.722 28 H 0.164 0.836 29 H 0.399 0.601 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.342 0.658 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 -12.882 0.071 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.194 4.194 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.099 0.901 9 C 0.093 3.907 10 N -0.307 5.307 11 C -0.090 4.090 12 C -0.107 4.107 13 N -0.363 5.363 14 C 0.057 3.943 15 H 0.078 0.922 16 C -0.179 4.179 17 C -0.150 4.150 18 C -0.105 4.105 19 H 0.116 0.884 20 C -0.090 4.090 21 N -0.305 5.305 22 C -0.087 4.087 23 C -0.108 4.108 24 H 0.114 0.886 25 C -0.099 4.099 26 N -0.223 5.223 27 H 0.089 0.911 28 H 0.181 0.819 29 H 0.235 0.765 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.856 -12.471 -0.039 16.534 hybrid contribution -0.177 0.632 0.137 0.671 sum -11.032 -11.839 0.098 16.183 Atomic orbital electron populations 1.70227 1.08684 1.28941 1.31188 1.26884 0.95807 1.04206 0.92505 0.85051 0.78779 0.75379 0.79450 1.18672 1.18889 1.18281 1.19353 0.94414 0.89073 1.46869 0.90065 1.20105 0.86261 0.91601 0.92696 1.68526 1.41367 0.98935 1.21920 1.22809 0.90218 0.96565 0.99400 1.19161 0.93167 0.88786 1.09624 1.43673 1.03957 1.03425 1.85247 1.21822 0.80118 0.96801 0.95608 0.92237 1.23060 0.97049 1.00415 0.97392 1.22495 0.95594 0.96872 1.00066 1.22509 0.93166 0.99376 0.95470 0.88427 1.23421 0.96234 1.00557 0.88753 1.63953 1.05228 1.56306 1.05012 1.22958 0.92764 0.95964 0.97013 1.22694 0.97818 0.96037 0.94250 0.88587 1.22981 0.99585 0.87697 0.99608 1.69190 1.08453 1.27813 1.16879 0.91137 0.81945 0.76494 0.91129 0.93487 0.91360 0.89959 0.93446 0.88780 0.84214 0.90457 0.94819 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.72 11.41 21.84 0.25 -42.47 16 2 C 0.03 1.44 5.50 85.30 0.47 1.91 16 3 Si 0.99 40.14 29.56 68.60 2.03 42.17 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.46 -27.08 9.35 23.42 0.22 -26.86 16 8 H 0.08 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.34 20.13 7.35 134.95 0.99 21.12 16 10 N -0.59 -32.25 10.34 -193.42 -2.00 -34.25 16 11 C 0.08 3.77 11.20 85.17 0.95 4.72 16 12 C 0.00 -0.03 6.72 38.93 0.26 0.23 16 13 N -0.73 -22.16 5.34 -312.18 -1.67 -23.82 16 14 C 0.16 4.26 2.34 46.17 0.11 4.37 16 15 H 0.06 1.80 5.74 -2.39 -0.01 1.78 16 16 C -0.14 -3.44 6.59 32.00 0.21 -3.23 16 17 C -0.11 -2.04 6.34 31.74 0.20 -1.84 16 18 C -0.09 -1.46 3.88 -9.19 -0.04 -1.50 16 19 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 20 C 0.04 0.61 7.16 86.10 0.62 1.23 16 21 N -0.68 -12.19 7.63 -497.21 -3.79 -15.99 16 22 C 0.04 0.89 7.03 86.43 0.61 1.49 16 23 C -0.09 -1.80 3.62 -9.16 -0.03 -1.83 16 24 H 0.10 1.86 7.83 -2.38 -0.02 1.84 16 25 C 0.08 3.70 10.48 85.17 0.89 4.60 16 26 N -0.51 -29.24 7.84 -193.42 -1.52 -30.76 16 27 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 28 H 0.16 5.90 8.06 -2.91 -0.02 5.88 16 29 H 0.40 10.25 8.43 -92.70 -0.78 9.47 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.25 7.20 -2.39 -0.02 1.23 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.05 0.74 7.19 -2.39 -0.02 0.72 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.34 5.27 8.94 -89.70 -0.80 4.47 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.03 0.78 7.19 -2.39 -0.02 0.76 16 39 H 0.14 6.05 6.43 -2.91 -0.02 6.03 16 Total: -1.00 -68.66 312.98 -1.73 -70.39 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.50 Total: 30.32 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.46 Total: 4.41 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -8.73 Total: -147.30 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -68.66 -1.73 -70.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163262484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.146 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds