Wall clock time and date at job start Mon Mar 30 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48515 * 111.00036 * 2 1 4 4 C 1.54290 * 104.71127 * 200.72170 * 3 2 1 5 5 H 1.09003 * 112.84018 * 261.17396 * 4 3 2 6 6 C 1.54287 * 108.82025 * 135.72733 * 4 3 2 7 7 N 1.48511 * 104.71588 * 224.26963 * 6 4 3 8 8 C 1.38828 * 111.00117 * 159.27238 * 7 6 4 9 9 C 1.39966 * 119.96443 * 120.53948 * 8 7 6 10 10 N 1.32135 * 120.31327 * 179.70277 * 9 8 7 11 11 C 1.31923 * 120.27303 * 0.02562 * 10 9 8 12 12 C 1.40682 * 119.93617 * 0.02562 * 11 10 9 13 13 C 1.41267 * 120.15823 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00192 * 7.02200 * 13 12 11 15 15 C 1.40059 * 120.00325 * 187.03093 * 13 12 11 16 16 N 1.30731 * 119.99772 * 7.14550 * 15 13 12 17 17 Si 1.86794 * 120.00438 * 187.15299 * 15 13 12 18 18 H 1.48504 * 109.47173 * 59.99453 * 17 15 13 19 19 H 1.48498 * 109.47711 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47066 * 299.99919 * 17 15 13 21 21 N 1.32235 * 119.97044 * 300.26780 * 8 7 6 22 22 C 1.48519 * 104.20622 * 39.72902 * 7 6 4 23 23 C 1.54290 * 104.71098 * 320.27236 * 22 7 6 24 24 H 1.09005 * 112.83425 * 261.17218 * 23 22 7 25 25 C 1.48515 * 111.00185 * 244.59426 * 2 1 3 26 26 H 1.08996 * 109.47677 * 175.40123 * 1 2 3 27 27 H 1.09001 * 109.47582 * 295.40404 * 1 2 3 28 28 H 1.08998 * 109.47224 * 55.40149 * 1 2 3 29 29 H 1.08992 * 110.39080 * 81.91188 * 3 2 1 30 30 H 1.08995 * 110.38661 * 319.52337 * 3 2 1 31 31 H 1.08996 * 110.39081 * 105.46073 * 6 4 3 32 32 H 1.09003 * 110.38747 * 343.07495 * 6 4 3 33 33 H 1.07995 * 119.84790 * 359.72341 * 9 8 7 34 34 H 1.08002 * 120.03096 * 180.02562 * 11 10 9 35 35 H 0.96997 * 120.00402 * 179.97438 * 16 15 13 36 36 H 1.08995 * 110.38832 * 79.07934 * 22 7 6 37 37 H 1.09002 * 110.39033 * 201.46023 * 22 7 6 38 38 H 1.09004 * 110.38226 * 40.47287 * 25 2 1 39 39 H 1.08992 * 110.49177 * 278.14191 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3865 0.0000 4 6 3.4447 1.2521 -0.5280 5 1 4.1877 1.2417 0.2695 6 6 3.7041 2.3712 -1.5579 7 7 4.4007 1.6954 -2.6820 8 6 4.2911 2.4348 -3.8518 9 6 5.4441 2.8898 -4.5019 10 7 5.3480 3.5891 -5.6189 11 6 4.1639 3.8650 -6.1310 12 6 2.9977 3.4140 -5.4861 13 6 1.7274 3.7063 -6.0306 14 1 1.6505 4.1771 -6.9996 15 6 0.5676 3.3859 -5.3139 16 7 0.6585 2.9462 -4.0861 17 14 -1.1092 3.5864 -6.1122 18 1 -1.1870 2.7292 -7.3224 19 1 -2.1667 3.1823 -5.1512 20 1 -1.3070 5.0067 -6.4982 21 7 3.0977 2.7039 -4.3538 22 6 3.7041 0.3899 -2.8103 23 6 3.4446 -0.0602 -1.3575 24 1 4.1809 -0.7801 -0.9998 25 6 2.0012 -0.5948 -1.2524 26 1 -0.3634 -1.0243 -0.0824 27 1 -0.3634 0.4409 0.9283 28 1 -0.3633 0.5835 -0.8459 29 1 2.0031 1.7925 1.0115 30 1 1.4117 2.0195 -0.6632 31 1 4.3403 3.1441 -1.1267 32 1 2.7616 2.8001 -1.8982 33 1 6.4170 2.6680 -4.0888 34 1 4.0899 4.4365 -7.0444 35 1 -0.1446 2.7246 -3.5895 36 1 2.7616 0.5133 -3.3437 37 1 4.3403 -0.3312 -3.3235 38 1 1.4116 -0.2673 -2.1087 39 1 2.0030 -1.6828 -1.1874 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165151870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:18 Heat of formation + Delta-G solvation = 67.048433 kcal Electronic energy + Delta-G solvation = -21886.311774 eV Core-core repulsion = 18828.923763 eV Total energy + Delta-G solvation = -3057.388012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14364 -38.77808 -36.10853 -34.11210 -32.39850 -31.19944 -30.24708 -29.02206 -26.32222 -25.53875 -25.51836 -22.81892 -21.88623 -21.09426 -20.12919 -19.22065 -17.70653 -16.55492 -15.93056 -15.37499 -15.13438 -14.94366 -14.65914 -14.43232 -14.10940 -13.63934 -13.16582 -12.76406 -12.43883 -12.01648 -11.73132 -11.65308 -11.54708 -11.47921 -11.38561 -11.25455 -11.13472 -10.82380 -10.61281 -10.50275 -10.45214 -10.27618 -9.87793 -9.60530 -9.01891 -8.47383 -8.16119 -7.77845 -7.43532 -6.64964 -4.76605 2.37324 2.83459 2.93590 2.95810 3.11459 3.75346 4.18254 4.49185 4.50729 4.77562 5.07422 5.09308 5.39455 5.44405 5.59302 5.62476 5.65691 5.69468 5.79713 5.92086 5.93214 5.94960 6.01480 6.08173 6.10029 6.18963 6.33399 6.42198 6.52796 6.65125 6.71715 6.77160 6.87978 6.93977 7.12427 7.13931 7.29364 7.45545 7.80903 8.04634 8.37660 8.64703 9.16803 9.71157 10.01030 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.008234 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.804487 B = 3399.611274 C = 4986.597561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.517 5.517 3 C 0.037 3.963 4 C -0.088 4.088 5 H 0.088 0.912 6 C 0.043 3.957 7 N -0.457 5.457 8 C 0.256 3.744 9 C -0.084 4.084 10 N -0.428 5.428 11 C -0.068 4.068 12 C 0.221 3.779 13 C -0.418 4.418 14 H 0.090 0.910 15 C 0.072 3.928 16 N -0.717 5.717 17 Si 0.910 3.090 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.262 1.262 21 N -0.478 5.478 22 C 0.045 3.955 23 C -0.088 4.088 24 H 0.088 0.912 25 C 0.037 3.963 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.274 0.726 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -4.770 6.876 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.241 5.241 3 C -0.091 4.091 4 C -0.108 4.108 5 H 0.107 0.893 6 C -0.084 4.084 7 N -0.180 5.180 8 C 0.017 3.983 9 C -0.244 4.244 10 N -0.140 5.140 11 C -0.237 4.237 12 C 0.093 3.907 13 C -0.450 4.450 14 H 0.108 0.892 15 C -0.154 4.154 16 N -0.338 5.338 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.187 1.187 21 N -0.199 5.199 22 C -0.083 4.083 23 C -0.108 4.108 24 H 0.107 0.893 25 C -0.092 4.092 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.796 -5.200 7.652 9.424 hybrid contribution -1.967 0.644 -1.194 2.389 sum -3.763 -4.556 6.458 8.753 Atomic orbital electron populations 1.22475 0.88477 1.01592 1.01033 1.65380 1.07885 1.15711 1.35080 1.23276 0.94922 0.90063 1.00877 1.22597 0.96137 0.94703 0.97333 0.89343 1.23264 0.99097 0.95747 0.90332 1.63535 1.49438 1.02610 1.02385 1.20949 0.91255 0.94102 0.92017 1.22275 0.97249 1.08221 0.96692 1.67727 1.27766 1.08988 1.09470 1.23158 0.88920 1.08284 1.03358 1.19204 0.93787 0.89178 0.88550 1.19571 0.89018 1.32812 1.03600 0.89213 1.26066 1.01479 0.93322 0.94502 1.70005 1.30447 1.25208 1.08096 0.86328 0.80200 0.80066 0.80016 1.18690 1.20187 1.18690 1.69317 1.22313 1.15788 1.12461 1.23210 0.98847 0.90858 0.95365 1.22597 0.96123 0.96786 0.95267 0.89315 1.23268 0.94956 0.99506 0.91431 0.91713 0.91638 0.94928 0.90706 0.92557 0.91275 0.90527 0.85068 0.84891 0.91457 0.91058 0.91253 0.92865 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 60.06 0.57 0.74 16 2 N -0.52 -7.45 5.66 -238.45 -1.35 -8.80 16 3 C 0.04 0.55 6.03 -2.25 -0.01 0.53 16 4 C -0.09 -1.36 4.12 -88.08 -0.36 -1.72 16 5 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 6 C 0.04 0.81 5.95 -2.26 -0.01 0.80 16 7 N -0.46 -9.30 5.37 -168.80 -0.91 -10.20 16 8 C 0.26 6.10 5.51 -155.02 -0.85 5.24 16 9 C -0.08 -2.02 11.17 -16.77 -0.19 -2.21 16 10 N -0.43 -10.65 10.47 -12.11 -0.13 -10.78 16 11 C -0.07 -1.70 10.97 -16.59 -0.18 -1.88 16 12 C 0.22 5.79 6.52 -84.83 -0.55 5.24 16 13 C -0.42 -10.46 9.15 -37.75 -0.35 -10.80 16 14 H 0.09 2.08 7.86 -52.49 -0.41 1.66 16 15 C 0.07 1.71 5.47 -17.34 -0.09 1.61 16 16 N -0.72 -17.40 11.58 55.55 0.64 -16.75 16 17 Si 0.91 17.48 29.57 -169.99 -5.03 12.45 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 N -0.48 -12.30 6.58 -10.14 -0.07 -12.37 16 22 C 0.04 0.84 5.94 -2.25 -0.01 0.82 16 23 C -0.09 -1.36 4.12 -88.08 -0.36 -1.72 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 25 C 0.04 0.54 6.03 -2.26 -0.01 0.53 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.68 6.47 -51.93 -0.34 1.34 16 33 H 0.13 2.88 8.06 -52.49 -0.42 2.45 16 34 H 0.13 3.00 8.06 -52.49 -0.42 2.57 16 35 H 0.27 6.12 8.29 -40.82 -0.34 5.78 16 36 H 0.07 1.54 6.35 -51.93 -0.33 1.21 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.90 6.98 -51.93 -0.36 0.54 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -27.20 313.14 -10.11 -37.31 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.58 Total: 7.25 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.42 Total: -2.82 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -1.81 Total: -58.91 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.20 -10.11 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165151870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.356 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds