Wall clock time and date at job start Mon Mar 30 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48515 * 111.00036 * 2 1 4 4 C 1.54290 * 104.71127 * 200.72170 * 3 2 1 5 5 H 1.09003 * 112.84018 * 261.17396 * 4 3 2 6 6 C 1.54287 * 108.82025 * 135.72733 * 4 3 2 7 7 N 1.48511 * 104.71588 * 224.26963 * 6 4 3 8 8 C 1.38828 * 111.00117 * 159.27238 * 7 6 4 9 9 C 1.39966 * 119.96443 * 120.53948 * 8 7 6 10 10 N 1.32135 * 120.31327 * 179.70277 * 9 8 7 11 11 C 1.31923 * 120.27303 * 0.02562 * 10 9 8 12 12 C 1.40682 * 119.93617 * 0.02562 * 11 10 9 13 13 C 1.41267 * 120.15823 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00192 * 7.02200 * 13 12 11 15 15 C 1.40059 * 120.00325 * 187.03093 * 13 12 11 16 16 N 1.30731 * 119.99772 * 7.14550 * 15 13 12 17 17 Si 1.86794 * 120.00438 * 187.15299 * 15 13 12 18 18 H 1.48504 * 109.47173 * 59.99453 * 17 15 13 19 19 H 1.48498 * 109.47711 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47066 * 299.99919 * 17 15 13 21 21 N 1.32235 * 119.97044 * 300.26780 * 8 7 6 22 22 C 1.48519 * 104.20622 * 39.72902 * 7 6 4 23 23 C 1.54290 * 104.71098 * 320.27236 * 22 7 6 24 24 H 1.09005 * 112.83425 * 261.17218 * 23 22 7 25 25 C 1.48515 * 111.00185 * 244.59426 * 2 1 3 26 26 H 1.08996 * 109.47677 * 175.40123 * 1 2 3 27 27 H 1.09001 * 109.47582 * 295.40404 * 1 2 3 28 28 H 1.08998 * 109.47224 * 55.40149 * 1 2 3 29 29 H 1.08992 * 110.39080 * 81.91188 * 3 2 1 30 30 H 1.08995 * 110.38661 * 319.52337 * 3 2 1 31 31 H 1.08996 * 110.39081 * 105.46073 * 6 4 3 32 32 H 1.09003 * 110.38747 * 343.07495 * 6 4 3 33 33 H 1.07995 * 119.84790 * 359.72341 * 9 8 7 34 34 H 1.08002 * 120.03096 * 180.02562 * 11 10 9 35 35 H 0.96997 * 120.00402 * 179.97438 * 16 15 13 36 36 H 1.08995 * 110.38832 * 79.07934 * 22 7 6 37 37 H 1.09002 * 110.39033 * 201.46023 * 22 7 6 38 38 H 1.09004 * 110.38226 * 40.47287 * 25 2 1 39 39 H 1.08992 * 110.49177 * 278.14191 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3865 0.0000 4 6 3.4447 1.2521 -0.5280 5 1 4.1877 1.2417 0.2695 6 6 3.7041 2.3712 -1.5579 7 7 4.4007 1.6954 -2.6820 8 6 4.2911 2.4348 -3.8518 9 6 5.4441 2.8898 -4.5019 10 7 5.3480 3.5891 -5.6189 11 6 4.1639 3.8650 -6.1310 12 6 2.9977 3.4140 -5.4861 13 6 1.7274 3.7063 -6.0306 14 1 1.6505 4.1771 -6.9996 15 6 0.5676 3.3859 -5.3139 16 7 0.6585 2.9462 -4.0861 17 14 -1.1092 3.5864 -6.1122 18 1 -1.1870 2.7292 -7.3224 19 1 -2.1667 3.1823 -5.1512 20 1 -1.3070 5.0067 -6.4982 21 7 3.0977 2.7039 -4.3538 22 6 3.7041 0.3899 -2.8103 23 6 3.4446 -0.0602 -1.3575 24 1 4.1809 -0.7801 -0.9998 25 6 2.0012 -0.5948 -1.2524 26 1 -0.3634 -1.0243 -0.0824 27 1 -0.3634 0.4409 0.9283 28 1 -0.3633 0.5835 -0.8459 29 1 2.0031 1.7925 1.0115 30 1 1.4117 2.0195 -0.6632 31 1 4.3403 3.1441 -1.1267 32 1 2.7616 2.8001 -1.8982 33 1 6.4170 2.6680 -4.0888 34 1 4.0899 4.4365 -7.0444 35 1 -0.1446 2.7246 -3.5895 36 1 2.7616 0.5133 -3.3437 37 1 4.3403 -0.3312 -3.3235 38 1 1.4116 -0.2673 -2.1087 39 1 2.0030 -1.6828 -1.1874 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165151870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:14 Heat of formation + Delta-G solvation = 48.599499 kcal Electronic energy + Delta-G solvation = -21887.111780 eV Core-core repulsion = 18828.923763 eV Total energy + Delta-G solvation = -3058.188018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67647 -40.44231 -37.57101 -35.97066 -34.03297 -32.93107 -31.58487 -30.69532 -28.09198 -26.93193 -26.91167 -24.54608 -23.64850 -22.38348 -21.73935 -20.52857 -19.57455 -18.15812 -17.39538 -17.17180 -16.93425 -16.57279 -16.00638 -15.75261 -15.40905 -15.19183 -14.83937 -14.32288 -13.84780 -13.43191 -13.40111 -13.35310 -13.13379 -13.00497 -12.78639 -12.71480 -12.38366 -12.35655 -12.09061 -11.87143 -11.81410 -11.72595 -11.55301 -11.49175 -10.86384 -10.04221 -9.68159 -9.55876 -9.24040 -8.47606 -6.69334 0.50004 1.00618 1.35391 1.46469 1.48920 2.12558 2.67832 2.87747 3.06492 3.44983 3.69221 3.73742 3.79886 4.07062 4.14781 4.20789 4.27316 4.38762 4.44754 4.49027 4.52062 4.53713 4.71315 4.74225 4.75410 4.85472 4.89632 4.93925 4.97369 5.04588 5.09131 5.17906 5.27872 5.35627 5.60788 5.71346 5.75832 5.94543 5.98276 6.18835 6.50452 6.75771 7.24611 7.80043 8.21530 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.008234 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.804487 B = 3399.611274 C = 4986.597561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.512 5.512 3 C 0.041 3.959 4 C -0.079 4.079 5 H 0.115 0.885 6 C 0.046 3.954 7 N -0.454 5.454 8 C 0.252 3.748 9 C -0.099 4.099 10 N -0.435 5.435 11 C -0.087 4.087 12 C 0.188 3.812 13 C -0.439 4.439 14 H 0.102 0.898 15 C 0.030 3.970 16 N -0.740 5.740 17 Si 0.987 3.013 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.254 1.254 21 N -0.495 5.495 22 C 0.048 3.952 23 C -0.079 4.079 24 H 0.116 0.884 25 C 0.041 3.959 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.013 0.987 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.280 0.720 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.024 0.976 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -5.752 8.173 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.235 5.235 3 C -0.087 4.087 4 C -0.098 4.098 5 H 0.133 0.867 6 C -0.081 4.081 7 N -0.177 5.177 8 C 0.013 3.987 9 C -0.259 4.259 10 N -0.147 5.147 11 C -0.255 4.255 12 C 0.061 3.939 13 C -0.471 4.471 14 H 0.120 0.880 15 C -0.194 4.194 16 N -0.361 5.361 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.178 1.178 21 N -0.216 5.216 22 C -0.080 4.080 23 C -0.098 4.098 24 H 0.134 0.866 25 C -0.088 4.088 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.115 0.885 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.487 -6.177 8.948 11.154 hybrid contribution -1.735 0.943 -1.565 2.520 sum -4.222 -5.234 7.382 9.986 Atomic orbital electron populations 1.22535 0.87453 1.02468 1.01066 1.65450 1.08851 1.14965 1.34247 1.23219 0.94092 0.90133 1.01276 1.22624 0.97179 0.93056 0.96940 0.86654 1.23227 0.97180 0.97094 0.90636 1.63605 1.49673 1.02972 1.01428 1.21309 0.90804 0.93799 0.92837 1.22629 0.98187 1.08348 0.96741 1.67725 1.27785 1.09256 1.09928 1.23382 0.88775 1.09152 1.04214 1.19672 0.94901 0.90018 0.89292 1.19995 0.89508 1.33231 1.04354 0.88034 1.26974 1.05051 0.92539 0.94842 1.70099 1.31843 1.24871 1.09283 0.85172 0.74961 0.80287 0.78916 1.18318 1.19440 1.17808 1.69356 1.23339 1.16255 1.12680 1.23183 0.96977 0.90219 0.97600 1.22624 0.97191 0.97290 0.92700 0.86577 1.23224 0.94111 1.00743 0.90692 0.90096 0.89970 0.96879 0.88533 0.95549 0.90750 0.94206 0.83215 0.83299 0.90908 0.94685 0.90600 0.95804 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.53 127.69 1.22 1.54 16 2 N -0.51 -13.73 5.66 -908.31 -5.14 -18.87 16 3 C 0.04 1.17 6.03 86.43 0.52 1.69 16 4 C -0.08 -2.29 4.12 -9.15 -0.04 -2.33 16 5 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 6 C 0.05 1.74 5.95 86.43 0.51 2.25 16 7 N -0.45 -18.57 5.37 -687.97 -3.69 -22.27 16 8 C 0.25 12.32 5.51 133.38 0.74 13.05 16 9 C -0.10 -4.81 11.17 85.07 0.95 -3.86 16 10 N -0.43 -22.04 10.47 -192.23 -2.01 -24.05 16 11 C -0.09 -4.44 10.97 85.28 0.94 -3.50 16 12 C 0.19 10.21 6.52 40.15 0.26 10.47 16 13 C -0.44 -22.44 9.15 23.46 0.21 -22.23 16 14 H 0.10 4.75 7.86 -2.91 -0.02 4.72 16 15 C 0.03 1.42 5.47 85.30 0.47 1.88 16 16 N -0.74 -36.96 11.58 21.84 0.25 -36.71 16 17 Si 0.99 35.64 29.57 68.60 2.03 37.67 16 18 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 19 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 20 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 21 N -0.50 -26.45 6.58 -186.00 -1.22 -27.68 16 22 C 0.05 1.79 5.94 86.43 0.51 2.30 16 23 C -0.08 -2.28 4.12 -9.15 -0.04 -2.32 16 24 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 25 C 0.04 1.15 6.03 86.43 0.52 1.67 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.01 0.36 7.97 -2.39 -0.02 0.34 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.03 0.92 6.91 -2.39 -0.02 0.90 16 31 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.04 1.81 6.47 -2.39 -0.02 1.80 16 33 H 0.15 6.54 8.06 -2.91 -0.02 6.52 16 34 H 0.15 6.86 8.06 -2.91 -0.02 6.84 16 35 H 0.28 12.83 8.29 -92.71 -0.77 12.06 16 36 H 0.03 1.57 6.35 -2.39 -0.02 1.56 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.02 0.82 6.98 -2.38 -0.02 0.80 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -60.10 313.14 -1.97 -62.07 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 1.04 Total: 29.20 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 6.78 Total: 0.63 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -11.82 Total: -129.57 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -60.10 -1.97 -62.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165151870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.666 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds