Wall clock time and date at job start Mon Mar 30 2020 01:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48495 * 109.47507 * 264.78772 * 3 2 1 5 5 H 1.48504 * 109.47201 * 24.78694 * 3 2 1 6 6 H 1.48501 * 109.47179 * 144.78425 * 3 2 1 7 7 C 1.37878 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00175 * 5.50342 * 7 2 1 9 9 C 1.50697 * 119.99954 * 185.49848 * 7 2 1 10 10 H 1.09004 * 109.53668 * 335.10624 * 9 7 2 11 11 C 1.53117 * 109.50441 * 95.20327 * 9 7 2 12 12 C 1.53123 * 109.16209 * 177.59502 * 11 9 7 13 13 C 1.53035 * 109.27854 * 302.34905 * 12 11 9 14 14 N 1.46845 * 109.52782 * 59.17598 * 13 12 11 15 15 C 1.38544 * 111.00161 * 174.16067 * 14 13 12 16 16 N 1.33136 * 120.64775 * 236.04839 * 15 14 13 17 17 C 1.31758 * 120.67766 * 179.97438 * 16 15 14 18 18 N 1.31881 * 121.97303 * 359.97438 * 17 16 15 19 19 C 1.32362 * 120.83117 * 0.02562 * 18 17 16 20 20 C 1.38179 * 119.16089 * 359.75196 * 19 18 17 21 21 C 1.50863 * 108.46832 * 179.79987 * 20 19 18 22 22 N 1.48131 * 105.69715 * 343.04302 * 21 20 19 23 23 C 1.48118 * 103.86694 * 27.09324 * 22 21 20 24 24 C 1.46853 * 111.19797 * 298.26087 * 14 13 12 25 25 H 0.97004 * 119.99903 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52023 * 57.69188 * 11 9 7 27 27 H 1.09001 * 109.57565 * 297.53003 * 11 9 7 28 28 H 1.08996 * 109.50113 * 182.40163 * 12 11 9 29 29 H 1.09001 * 109.49934 * 62.28673 * 12 11 9 30 30 H 1.09001 * 109.46073 * 299.16125 * 13 12 11 31 31 H 1.08999 * 109.45356 * 179.19114 * 13 12 11 32 32 H 1.08000 * 119.01246 * 180.02562 * 17 16 15 33 33 H 1.08997 * 110.35588 * 223.88789 * 21 20 19 34 34 H 1.09000 * 110.01183 * 102.01636 * 21 20 19 35 35 H 1.00904 * 110.99506 * 146.43562 * 22 21 20 36 36 H 1.08992 * 110.20178 * 213.60738 * 23 22 21 37 37 H 1.08996 * 110.26900 * 91.75471 * 23 22 21 38 38 H 1.09001 * 109.45890 * 181.75670 * 24 14 13 39 39 H 1.08994 * 109.46118 * 301.72370 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3959 2.6820 0.5870 6 1 3.4873 1.4744 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1271 -0.0906 9 6 3.5063 -1.1972 0.1245 10 1 3.9036 -0.2463 -0.2306 11 6 3.8967 -1.3985 1.5913 12 6 5.4227 -1.4605 1.7013 13 6 5.9473 -2.5941 0.8171 14 7 5.5483 -2.3549 -0.5758 15 6 6.1166 -3.2923 -1.4230 16 7 6.8626 -2.9086 -2.4569 17 6 7.4038 -3.7996 -3.2627 18 7 7.2348 -5.0954 -3.0853 19 6 6.5062 -5.5531 -2.0794 20 6 5.9235 -4.6543 -1.2065 21 6 5.1527 -5.4292 -0.1667 22 7 4.9827 -6.7904 -0.7256 23 6 6.1429 -6.9492 -1.6326 24 6 4.0864 -2.3384 -0.7140 25 1 -0.4850 0.8401 0.0004 26 1 3.4669 -2.3306 1.9580 27 1 3.5222 -0.5656 2.1865 28 1 5.7056 -1.6464 2.7374 29 1 5.8501 -0.5138 1.3709 30 1 5.5303 -3.5422 1.1566 31 1 7.0347 -2.6316 0.8820 32 1 8.0044 -3.4585 -4.0929 33 1 4.1800 -4.9685 0.0056 34 1 5.7199 -5.4719 0.7632 35 1 4.9974 -7.4858 0.0053 36 1 5.8677 -7.5600 -2.4923 37 1 6.9787 -7.4036 -1.1006 38 1 3.8223 -2.1904 -1.7611 39 1 3.6782 -3.2877 -0.3673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:00 Heat of formation + Delta-G solvation = 75.299367 kcal Electronic energy + Delta-G solvation = -21690.403219 eV Core-core repulsion = 18633.372995 eV Total energy + Delta-G solvation = -3057.030224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69802 -38.63972 -37.65310 -34.56152 -32.78606 -31.92787 -30.45235 -30.08167 -28.62489 -25.41381 -25.16115 -23.39865 -22.52992 -21.60844 -21.14096 -19.16079 -17.92328 -17.39950 -16.54856 -16.33656 -15.36475 -15.04495 -14.79099 -14.41707 -14.17094 -13.80267 -13.60669 -13.54535 -13.30687 -13.02348 -12.75404 -12.54173 -12.29255 -12.16445 -11.25277 -11.09574 -10.91717 -10.80209 -10.45755 -10.32108 -9.93375 -9.79049 -9.71781 -9.41015 -9.37657 -9.03281 -8.68679 -8.53513 -8.15015 -6.11218 -4.11806 0.80957 0.98047 3.31133 3.39014 3.42631 3.44811 3.53614 3.65331 3.87733 4.15982 4.41492 4.55414 4.74426 4.89383 5.01289 5.10676 5.17043 5.30083 5.34049 5.43260 5.47303 5.64172 5.69063 5.83040 5.95920 6.08867 6.15718 6.19173 6.24395 6.36449 6.53010 6.69422 6.77376 6.84448 6.93095 7.11590 7.27542 7.41729 7.49240 7.75171 8.15112 8.46647 8.92650 9.51782 11.01540 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.005497 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.244887 B = 5092.733080 C = 5291.995892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.023 3.977 10 H 0.043 0.957 11 C -0.114 4.114 12 C -0.120 4.120 13 C 0.069 3.931 14 N -0.506 5.506 15 C 0.393 3.607 16 N -0.501 5.501 17 C 0.307 3.693 18 N -0.520 5.520 19 C 0.165 3.835 20 C -0.241 4.241 21 C 0.086 3.914 22 N -0.652 5.652 23 C 0.090 3.910 24 C 0.082 3.918 25 H 0.264 0.736 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.202 0.798 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.352 0.648 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.452 -11.291 0.650 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.004 3.996 10 H 0.061 0.939 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.058 4.058 14 N -0.229 5.229 15 C 0.155 3.845 16 N -0.216 5.216 17 C 0.018 3.982 18 N -0.235 5.235 19 C 0.017 3.983 20 C -0.250 4.250 21 C -0.044 4.044 22 N -0.281 5.281 23 C -0.040 4.040 24 C -0.043 4.043 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.219 0.781 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.455 -10.223 -0.747 17.721 hybrid contribution 0.450 -0.124 1.338 1.418 sum 14.906 -10.347 0.592 18.154 Atomic orbital electron populations 1.69906 1.06361 1.27115 1.50109 1.25030 0.94666 0.99022 0.94026 0.86852 0.80182 0.83451 0.79059 1.20070 1.21709 1.18692 1.20876 0.88733 0.94698 1.51011 0.90929 1.19170 0.96051 0.93977 0.90448 0.93891 1.21909 0.91653 1.01291 1.00329 1.21702 0.98727 0.98062 0.97251 1.22143 0.99193 0.98531 0.85925 1.58783 1.12449 1.46372 1.05271 1.19599 0.88808 0.86232 0.89854 1.68300 1.09304 1.39519 1.04467 1.24947 0.93887 0.83189 0.96190 1.67563 1.17672 1.17856 1.20456 1.21916 0.90145 0.96900 0.89326 1.22847 1.03668 0.96751 1.01704 1.21492 1.00507 0.88606 0.93781 1.63627 1.40178 1.03648 1.20686 1.21328 0.92853 0.91449 0.98396 1.22464 0.79755 1.00151 1.01889 0.92568 0.92908 0.92416 0.92177 0.91510 0.94153 0.91883 0.78136 0.87683 0.91851 0.83091 0.87603 0.90983 0.91124 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.44 27.01 -169.99 -4.59 16.85 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.12 6.80 56.52 0.38 -5.73 16 7 C -0.52 -13.94 8.86 -34.44 -0.31 -14.25 16 8 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 9 C 0.02 0.52 1.94 -91.69 -0.18 0.35 16 10 H 0.04 1.03 5.27 -51.93 -0.27 0.76 16 11 C -0.11 -2.24 5.27 -26.61 -0.14 -2.38 16 12 C -0.12 -1.93 6.09 -26.65 -0.16 -2.10 16 13 C 0.07 1.07 5.03 -3.84 -0.02 1.05 16 14 N -0.51 -9.18 4.70 -173.13 -0.81 -9.99 16 15 C 0.39 6.73 5.71 -154.79 -0.88 5.84 16 16 N -0.50 -8.47 10.48 -13.85 -0.15 -8.61 16 17 C 0.31 4.28 12.27 -92.11 -1.13 3.15 16 18 N -0.52 -7.41 10.44 -10.78 -0.11 -7.52 16 19 C 0.16 2.28 7.49 -82.23 -0.62 1.66 16 20 C -0.24 -3.60 5.51 -104.19 -0.57 -4.17 16 21 C 0.09 1.07 5.59 -4.22 -0.02 1.05 16 22 N -0.65 -6.94 7.72 -114.18 -0.88 -7.82 16 23 C 0.09 0.92 7.45 -4.15 -0.03 0.89 16 24 C 0.08 1.67 4.46 -3.83 -0.02 1.66 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.57 5.42 -51.93 -0.28 0.29 16 31 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.11 1.51 6.01 -51.93 -0.31 1.19 16 34 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 35 H 0.35 2.65 8.92 -39.29 -0.35 2.30 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 39 H 0.04 0.75 5.71 -51.93 -0.30 0.45 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -31.50 304.67 -10.63 -42.13 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.27 Total: 1.77 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.18 Total: -5.25 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -1.18 Total: -60.10 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.50 -10.63 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.434 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds