Wall clock time and date at job start Mon Mar 30 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48495 * 109.47507 * 264.78772 * 3 2 1 5 5 H 1.48504 * 109.47201 * 24.78694 * 3 2 1 6 6 H 1.48501 * 109.47179 * 144.78425 * 3 2 1 7 7 C 1.37878 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00175 * 5.50342 * 7 2 1 9 9 C 1.50697 * 119.99954 * 185.49848 * 7 2 1 10 10 H 1.09004 * 109.53668 * 335.10624 * 9 7 2 11 11 C 1.53117 * 109.50441 * 95.20327 * 9 7 2 12 12 C 1.53123 * 109.16209 * 177.59502 * 11 9 7 13 13 C 1.53035 * 109.27854 * 302.34905 * 12 11 9 14 14 N 1.46845 * 109.52782 * 59.17598 * 13 12 11 15 15 C 1.38544 * 111.00161 * 174.16067 * 14 13 12 16 16 N 1.33136 * 120.64775 * 236.04839 * 15 14 13 17 17 C 1.31758 * 120.67766 * 179.97438 * 16 15 14 18 18 N 1.31881 * 121.97303 * 359.97438 * 17 16 15 19 19 C 1.32362 * 120.83117 * 0.02562 * 18 17 16 20 20 C 1.38179 * 119.16089 * 359.75196 * 19 18 17 21 21 C 1.50863 * 108.46832 * 179.79987 * 20 19 18 22 22 N 1.48131 * 105.69715 * 343.04302 * 21 20 19 23 23 C 1.48118 * 103.86694 * 27.09324 * 22 21 20 24 24 C 1.46853 * 111.19797 * 298.26087 * 14 13 12 25 25 H 0.97004 * 119.99903 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52023 * 57.69188 * 11 9 7 27 27 H 1.09001 * 109.57565 * 297.53003 * 11 9 7 28 28 H 1.08996 * 109.50113 * 182.40163 * 12 11 9 29 29 H 1.09001 * 109.49934 * 62.28673 * 12 11 9 30 30 H 1.09001 * 109.46073 * 299.16125 * 13 12 11 31 31 H 1.08999 * 109.45356 * 179.19114 * 13 12 11 32 32 H 1.08000 * 119.01246 * 180.02562 * 17 16 15 33 33 H 1.08997 * 110.35588 * 223.88789 * 21 20 19 34 34 H 1.09000 * 110.01183 * 102.01636 * 21 20 19 35 35 H 1.00904 * 110.99506 * 146.43562 * 22 21 20 36 36 H 1.08992 * 110.20178 * 213.60738 * 23 22 21 37 37 H 1.08996 * 110.26900 * 91.75471 * 23 22 21 38 38 H 1.09001 * 109.45890 * 181.75670 * 24 14 13 39 39 H 1.08994 * 109.46118 * 301.72370 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3959 2.6820 0.5870 6 1 3.4873 1.4744 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1271 -0.0906 9 6 3.5063 -1.1972 0.1245 10 1 3.9036 -0.2463 -0.2306 11 6 3.8967 -1.3985 1.5913 12 6 5.4227 -1.4605 1.7013 13 6 5.9473 -2.5941 0.8171 14 7 5.5483 -2.3549 -0.5758 15 6 6.1166 -3.2923 -1.4230 16 7 6.8626 -2.9086 -2.4569 17 6 7.4038 -3.7996 -3.2627 18 7 7.2348 -5.0954 -3.0853 19 6 6.5062 -5.5531 -2.0794 20 6 5.9235 -4.6543 -1.2065 21 6 5.1527 -5.4292 -0.1667 22 7 4.9827 -6.7904 -0.7256 23 6 6.1429 -6.9492 -1.6326 24 6 4.0864 -2.3384 -0.7140 25 1 -0.4850 0.8401 0.0004 26 1 3.4669 -2.3306 1.9580 27 1 3.5222 -0.5656 2.1865 28 1 5.7056 -1.6464 2.7374 29 1 5.8501 -0.5138 1.3709 30 1 5.5303 -3.5422 1.1566 31 1 7.0347 -2.6316 0.8820 32 1 8.0044 -3.4585 -4.0929 33 1 4.1800 -4.9685 0.0056 34 1 5.7199 -5.4719 0.7632 35 1 4.9974 -7.4858 0.0053 36 1 5.8677 -7.5600 -2.4923 37 1 6.9787 -7.4036 -1.1006 38 1 3.8223 -2.1904 -1.7611 39 1 3.6782 -3.2877 -0.3673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:58 Heat of formation + Delta-G solvation = 52.029486 kcal Electronic energy + Delta-G solvation = -21691.412277 eV Core-core repulsion = 18633.372995 eV Total energy + Delta-G solvation = -3058.039282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.80872 -40.03193 -38.61285 -36.08825 -34.50391 -33.27919 -32.12311 -31.22894 -29.55566 -27.07887 -26.60283 -24.61316 -23.63982 -23.12852 -22.30142 -20.68990 -19.20150 -19.08338 -18.05866 -17.28451 -16.56748 -16.36372 -16.13034 -15.83771 -15.47833 -15.17937 -14.86041 -14.72685 -14.55332 -14.50896 -14.22214 -13.90602 -13.69979 -13.14328 -12.95449 -12.90980 -12.59248 -12.02903 -11.85433 -11.81586 -11.61529 -11.42074 -11.23720 -10.98735 -10.69327 -10.66065 -10.53888 -9.56045 -9.48622 -8.30008 -6.33577 -0.30151 -0.14898 1.35257 1.37733 1.48118 2.24388 2.34972 2.51848 2.60768 2.98018 3.06584 3.14079 3.51403 3.76909 3.80229 4.01637 4.03384 4.16417 4.17858 4.29435 4.35834 4.46931 4.49300 4.57034 4.66652 4.74880 4.77800 4.87300 4.94449 5.09501 5.11955 5.24351 5.28892 5.53349 5.59612 5.65902 5.75206 5.89301 6.20195 6.22716 6.30881 6.73439 7.02713 7.32682 8.86507 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.005497 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.244887 B = 5092.733080 C = 5291.995892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.019 3.981 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.514 4.514 8 H 0.034 0.966 9 C 0.022 3.978 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.516 5.516 15 C 0.369 3.631 16 N -0.531 5.531 17 C 0.305 3.695 18 N -0.524 5.524 19 C 0.160 3.840 20 C -0.251 4.251 21 C 0.090 3.910 22 N -0.659 5.659 23 C 0.095 3.905 24 C 0.099 3.901 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.371 0.629 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.041 0.959 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -12.459 1.431 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.002 3.998 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.149 4.149 13 C -0.057 4.057 14 N -0.239 5.239 15 C 0.131 3.869 16 N -0.246 5.246 17 C 0.017 3.983 18 N -0.239 5.239 19 C 0.012 3.988 20 C -0.259 4.259 21 C -0.039 4.039 22 N -0.292 5.292 23 C -0.035 4.035 24 C -0.027 4.027 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.249 -11.417 0.051 20.685 hybrid contribution -0.406 0.090 1.022 1.104 sum 16.843 -11.327 1.074 20.326 Atomic orbital electron populations 1.70043 1.08114 1.28035 1.52414 1.25825 0.95341 1.02661 0.94079 0.85881 0.79603 0.79116 0.79202 1.20141 1.21290 1.16569 1.21149 0.91263 0.93136 1.49703 0.94719 1.19110 0.93062 0.94395 0.93188 0.95042 1.21747 0.94769 1.00961 0.97324 1.21646 0.95350 0.98217 0.99645 1.22243 1.00326 0.98883 0.84292 1.58594 1.10433 1.47871 1.07040 1.19616 0.89964 0.86960 0.90322 1.68268 1.10380 1.40888 1.05075 1.25639 0.93367 0.82995 0.96291 1.67683 1.17827 1.17862 1.20554 1.22603 0.89123 0.98531 0.88561 1.22996 1.04052 0.96082 1.02774 1.21401 0.99178 0.89108 0.94248 1.63562 1.40797 1.03242 1.21573 1.21470 0.93653 0.89448 0.98911 1.21994 0.82051 0.99171 0.99482 0.92520 0.92674 0.93492 0.88539 0.92159 0.92614 0.89989 0.74855 0.90048 0.89441 0.80914 0.86614 0.87772 0.94019 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 2 C 0.02 1.07 5.47 84.65 0.46 1.53 16 3 Si 0.94 44.82 27.01 68.60 1.85 46.68 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.24 -10.69 6.80 99.48 0.68 -10.02 16 7 C -0.51 -28.87 8.86 25.60 0.23 -28.64 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 9 C 0.02 1.00 1.94 -11.49 -0.02 0.98 16 10 H 0.03 1.51 5.27 -2.38 -0.01 1.50 16 11 C -0.11 -4.22 5.27 30.67 0.16 -4.06 16 12 C -0.11 -3.28 6.09 30.65 0.19 -3.10 16 13 C 0.07 1.95 5.03 86.33 0.43 2.38 16 14 N -0.52 -18.31 4.70 -701.67 -3.30 -21.61 16 15 C 0.37 12.27 5.71 133.03 0.76 13.03 16 16 N -0.53 -17.46 10.48 -197.74 -2.07 -19.53 16 17 C 0.30 8.02 12.27 180.87 2.22 10.24 16 18 N -0.52 -13.84 10.44 -188.02 -1.96 -15.80 16 19 C 0.16 4.06 7.49 42.57 0.32 4.38 16 20 C -0.25 -7.07 5.51 -19.58 -0.11 -7.18 16 21 C 0.09 2.07 5.59 85.37 0.48 2.55 16 22 N -0.66 -12.26 7.72 -515.17 -3.98 -16.24 16 23 C 0.09 1.62 7.45 85.42 0.64 2.26 16 24 C 0.10 4.11 4.46 86.33 0.39 4.49 16 25 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.42 5.42 -2.39 -0.01 1.41 16 31 H 0.08 2.07 8.10 -2.39 -0.02 2.05 16 32 H 0.24 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.08 2.28 6.01 -2.39 -0.01 2.26 16 34 H 0.09 1.56 7.39 -2.39 -0.02 1.54 16 35 H 0.37 4.35 8.92 -89.69 -0.80 3.55 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 39 H 0.04 1.61 5.71 -2.39 -0.01 1.59 16 Total: -1.00 -70.83 304.67 -2.77 -73.60 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.25 Total: 12.55 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 6.14 Total: -1.12 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -11.01 Total: -131.71 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.85 Total: 46.68 kcal Total: -70.83 -2.77 -73.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.628 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds