Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99764 * 2 1 4 4 H 1.48499 * 109.46908 * 264.77718 * 3 2 1 5 5 H 1.48497 * 109.47215 * 24.77763 * 3 2 1 6 6 H 1.48500 * 109.47417 * 144.78073 * 3 2 1 7 7 C 1.37875 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00268 * 5.80254 * 7 2 1 9 9 C 1.50704 * 119.99733 * 185.80278 * 7 2 1 10 10 H 1.09001 * 109.50209 * 335.10734 * 9 7 2 11 11 C 1.53123 * 109.50064 * 214.99225 * 9 7 2 12 12 C 1.53119 * 109.15999 * 182.40462 * 11 9 7 13 13 C 1.53037 * 109.27949 * 57.65180 * 12 11 9 14 14 N 1.46850 * 109.52636 * 300.82286 * 13 12 11 15 15 C 1.38399 * 111.00130 * 185.83742 * 14 13 12 16 16 N 1.32512 * 119.15612 * 123.95526 * 15 14 13 17 17 C 1.32404 * 120.74885 * 180.02562 * 16 15 14 18 18 C 1.38282 * 118.97536 * 359.97438 * 17 16 15 19 19 C 1.38676 * 118.82846 * 359.97438 * 18 17 16 20 20 N 1.32088 * 119.19494 * 359.74076 * 19 18 17 21 21 C 1.51014 * 108.18501 * 180.02562 * 19 18 17 22 22 N 1.48099 * 105.71116 * 342.61164 * 21 19 18 23 23 C 1.48112 * 103.94453 * 27.42287 * 22 21 19 24 24 C 1.46850 * 111.19659 * 61.73835 * 14 13 12 25 25 H 0.97000 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.52092 * 302.30513 * 11 9 7 27 27 H 1.08998 * 109.52538 * 62.49789 * 11 9 7 28 28 H 1.08999 * 109.50434 * 297.71629 * 12 11 9 29 29 H 1.08999 * 109.50639 * 177.59415 * 12 11 9 30 30 H 1.08999 * 109.46482 * 180.80377 * 13 12 11 31 31 H 1.09003 * 109.45873 * 60.83594 * 13 12 11 32 32 H 1.08001 * 120.51037 * 179.97438 * 17 16 15 33 33 H 1.09000 * 110.20484 * 223.55049 * 21 19 18 34 34 H 1.09001 * 110.26642 * 101.70212 * 21 19 18 35 35 H 1.00902 * 111.00022 * 268.03183 * 22 21 19 36 36 H 1.09001 * 110.21229 * 213.54966 * 23 22 21 37 37 H 1.09000 * 110.27810 * 91.68109 * 23 22 21 38 38 H 1.09003 * 109.46189 * 58.27527 * 24 14 13 39 39 H 1.08997 * 109.46065 * 178.25588 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3957 2.6820 0.5868 6 1 3.4871 1.4746 0.8074 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1270 -0.0936 9 6 3.5058 -1.1973 0.1325 10 1 3.9040 -0.2455 -0.2192 11 6 4.0901 -2.3379 -0.7055 12 6 5.6094 -2.3715 -0.5185 13 6 5.9320 -2.5408 0.9679 14 7 5.3521 -1.4249 1.7262 15 6 5.7345 -1.4766 3.0553 16 7 6.3411 -0.4287 3.5937 17 6 6.7209 -0.4443 4.8620 18 6 6.4747 -1.5735 5.6213 19 6 5.8370 -2.6524 5.0276 20 7 5.4786 -2.5707 3.7589 21 6 5.6912 -3.7418 6.0633 22 7 6.6456 -3.3993 7.1427 23 6 6.7642 -1.9252 7.0598 24 6 3.8892 -1.4006 1.6000 25 1 -0.4850 0.8400 -0.0004 26 1 3.6619 -3.2857 -0.3795 27 1 3.8561 -2.1740 -1.7574 28 1 6.0414 -1.4386 -0.8806 29 1 6.0267 -3.2081 -1.0790 30 1 7.0131 -2.5508 1.1061 31 1 5.5115 -3.4806 1.3260 32 1 7.2154 0.4118 5.2968 33 1 5.9444 -4.7094 5.6300 34 1 4.6732 -3.7589 6.4525 35 1 7.5389 -3.8430 6.9898 36 1 7.7735 -1.6130 7.3280 37 1 6.0364 -1.4501 7.7175 38 1 3.4784 -2.3457 1.9551 39 1 3.4868 -0.5824 2.1971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = 74.055504 kcal Electronic energy + Delta-G solvation = -21283.822946 eV Core-core repulsion = 18226.738784 eV Total energy + Delta-G solvation = -3057.084162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58348 -38.88940 -37.22790 -34.00425 -33.28246 -32.24415 -30.32915 -30.12344 -28.23139 -25.30253 -25.07002 -23.66050 -22.11399 -21.84049 -21.21266 -18.96024 -17.99601 -17.31074 -16.65651 -16.46774 -15.37841 -15.11088 -14.89014 -14.19154 -13.99903 -13.81803 -13.66575 -13.28277 -13.10605 -12.90008 -12.59111 -12.40554 -12.30348 -12.20808 -11.15630 -11.09307 -11.02440 -10.73480 -10.59270 -10.37504 -9.83119 -9.65700 -9.55221 -9.36689 -9.28774 -9.14914 -8.95202 -8.52342 -8.14191 -6.10143 -4.10733 0.76934 1.05586 3.31053 3.35981 3.41264 3.50800 3.63665 3.75600 3.77456 4.24276 4.44363 4.52485 4.75759 4.84332 5.02163 5.21638 5.23102 5.37139 5.43371 5.46686 5.48224 5.64703 5.73402 5.89004 5.97376 6.08148 6.21281 6.29889 6.34277 6.46182 6.63285 6.70607 6.72350 6.75768 6.91951 7.20565 7.33349 7.45687 7.60722 7.77413 8.22718 8.51073 8.95856 9.53517 11.02290 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.005233 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.704127 B = 5348.978268 C = 5715.959102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.256 1.256 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.042 0.958 11 C -0.106 4.106 12 C -0.118 4.118 13 C 0.073 3.927 14 N -0.481 5.481 15 C 0.506 3.494 16 N -0.492 5.492 17 C 0.177 3.823 18 C -0.265 4.265 19 C 0.149 3.851 20 N -0.525 5.525 21 C 0.090 3.910 22 N -0.648 5.648 23 C 0.096 3.904 24 C 0.077 3.923 25 H 0.264 0.736 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.169 0.831 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.343 0.657 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.043 0.957 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 -5.141 11.823 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.003 3.997 10 H 0.060 0.940 11 C -0.144 4.144 12 C -0.156 4.156 13 C -0.054 4.054 14 N -0.206 5.206 15 C 0.152 3.848 16 N -0.207 5.207 17 C 0.009 3.991 18 C -0.271 4.271 19 C -0.004 4.004 20 N -0.244 5.244 21 C -0.041 4.041 22 N -0.274 5.274 23 C -0.035 4.035 24 C -0.049 4.049 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.186 0.814 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.228 -4.593 11.227 19.469 hybrid contribution 0.756 0.498 0.357 0.973 sum 15.984 -4.095 11.584 20.160 Atomic orbital electron populations 1.69916 1.06405 1.27137 1.49933 1.25092 0.94688 0.99129 0.93931 0.86919 0.80663 0.83389 0.79215 1.19960 1.21723 1.18059 1.20950 0.88973 0.94675 1.50541 0.90794 1.19191 0.96366 0.95277 0.88908 0.93958 1.21641 0.92103 0.99913 1.00761 1.21686 0.98797 1.01527 0.93591 1.21999 0.97813 0.91112 0.94455 1.59639 1.14421 1.44722 1.01847 1.21487 0.88348 0.83483 0.91451 1.68329 1.11978 1.28503 1.11868 1.22558 0.92490 0.95949 0.88069 1.22739 1.06016 0.98296 1.00022 1.22781 0.90460 0.96327 0.90794 1.67941 1.20259 1.29081 1.07100 1.21554 0.99780 0.95843 0.86939 1.63585 1.14497 1.05842 1.43473 1.21308 1.02877 0.88783 0.90507 1.22826 0.79404 1.00406 1.02236 0.92587 0.92952 0.92078 0.91498 0.92055 0.92281 0.93393 0.81433 0.88746 0.87046 0.84140 0.89715 0.88248 0.93871 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 22.01 27.01 -169.99 -4.59 17.42 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.45 6.79 56.52 0.38 -6.06 16 7 C -0.51 -14.36 8.86 -34.44 -0.31 -14.66 16 8 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.02 0.53 1.94 -91.69 -0.18 0.35 16 10 H 0.04 1.05 5.25 -51.93 -0.27 0.78 16 11 C -0.11 -2.14 5.27 -26.61 -0.14 -2.28 16 12 C -0.12 -1.99 6.09 -26.65 -0.16 -2.16 16 13 C 0.07 1.29 5.18 -3.83 -0.02 1.27 16 14 N -0.48 -9.78 4.71 -175.40 -0.83 -10.61 16 15 C 0.51 9.65 6.24 -322.69 -2.01 7.64 16 16 N -0.49 -8.79 10.47 -13.96 -0.15 -8.93 16 17 C 0.18 2.34 11.30 -17.29 -0.20 2.14 16 18 C -0.26 -3.15 6.32 -104.35 -0.66 -3.81 16 19 C 0.15 2.06 7.50 -82.17 -0.62 1.45 16 20 N -0.53 -9.20 9.71 -10.05 -0.10 -9.30 16 21 C 0.09 0.90 7.45 -4.16 -0.03 0.87 16 22 N -0.65 -5.30 7.72 -114.19 -0.88 -6.18 16 23 C 0.10 0.78 7.45 -4.21 -0.03 0.75 16 24 C 0.08 1.75 4.57 -3.83 -0.02 1.74 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.05 0.85 7.91 -51.93 -0.41 0.44 16 32 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.34 2.22 8.92 -39.29 -0.35 1.87 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 39 H 0.06 1.55 8.10 -51.93 -0.42 1.13 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -32.74 314.19 -11.18 -43.92 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.68 Total: 0.28 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -4.47 Total: -4.68 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -1.18 Total: -61.67 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.59 Total: 17.42 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.74 -11.18 -43.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.971 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds