Wall clock time and date at job start Mon Mar 30 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99764 * 2 1 4 4 H 1.48499 * 109.46908 * 264.77718 * 3 2 1 5 5 H 1.48497 * 109.47215 * 24.77763 * 3 2 1 6 6 H 1.48500 * 109.47417 * 144.78073 * 3 2 1 7 7 C 1.37875 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00268 * 5.80254 * 7 2 1 9 9 C 1.50704 * 119.99733 * 185.80278 * 7 2 1 10 10 H 1.09001 * 109.50209 * 335.10734 * 9 7 2 11 11 C 1.53123 * 109.50064 * 214.99225 * 9 7 2 12 12 C 1.53119 * 109.15999 * 182.40462 * 11 9 7 13 13 C 1.53037 * 109.27949 * 57.65180 * 12 11 9 14 14 N 1.46850 * 109.52636 * 300.82286 * 13 12 11 15 15 C 1.38399 * 111.00130 * 185.83742 * 14 13 12 16 16 N 1.32512 * 119.15612 * 123.95526 * 15 14 13 17 17 C 1.32404 * 120.74885 * 180.02562 * 16 15 14 18 18 C 1.38282 * 118.97536 * 359.97438 * 17 16 15 19 19 C 1.38676 * 118.82846 * 359.97438 * 18 17 16 20 20 N 1.32088 * 119.19494 * 359.74076 * 19 18 17 21 21 C 1.51014 * 108.18501 * 180.02562 * 19 18 17 22 22 N 1.48099 * 105.71116 * 342.61164 * 21 19 18 23 23 C 1.48112 * 103.94453 * 27.42287 * 22 21 19 24 24 C 1.46850 * 111.19659 * 61.73835 * 14 13 12 25 25 H 0.97000 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.52092 * 302.30513 * 11 9 7 27 27 H 1.08998 * 109.52538 * 62.49789 * 11 9 7 28 28 H 1.08999 * 109.50434 * 297.71629 * 12 11 9 29 29 H 1.08999 * 109.50639 * 177.59415 * 12 11 9 30 30 H 1.08999 * 109.46482 * 180.80377 * 13 12 11 31 31 H 1.09003 * 109.45873 * 60.83594 * 13 12 11 32 32 H 1.08001 * 120.51037 * 179.97438 * 17 16 15 33 33 H 1.09000 * 110.20484 * 223.55049 * 21 19 18 34 34 H 1.09001 * 110.26642 * 101.70212 * 21 19 18 35 35 H 1.00902 * 111.00022 * 268.03183 * 22 21 19 36 36 H 1.09001 * 110.21229 * 213.54966 * 23 22 21 37 37 H 1.09000 * 110.27810 * 91.68109 * 23 22 21 38 38 H 1.09003 * 109.46189 * 58.27527 * 24 14 13 39 39 H 1.08997 * 109.46065 * 178.25588 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3957 2.6820 0.5868 6 1 3.4871 1.4746 0.8074 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1270 -0.0936 9 6 3.5058 -1.1973 0.1325 10 1 3.9040 -0.2455 -0.2192 11 6 4.0901 -2.3379 -0.7055 12 6 5.6094 -2.3715 -0.5185 13 6 5.9320 -2.5408 0.9679 14 7 5.3521 -1.4249 1.7262 15 6 5.7345 -1.4766 3.0553 16 7 6.3411 -0.4287 3.5937 17 6 6.7209 -0.4443 4.8620 18 6 6.4747 -1.5735 5.6213 19 6 5.8370 -2.6524 5.0276 20 7 5.4786 -2.5707 3.7589 21 6 5.6912 -3.7418 6.0633 22 7 6.6456 -3.3993 7.1427 23 6 6.7642 -1.9252 7.0598 24 6 3.8892 -1.4006 1.6000 25 1 -0.4850 0.8400 -0.0004 26 1 3.6619 -3.2857 -0.3795 27 1 3.8561 -2.1740 -1.7574 28 1 6.0414 -1.4386 -0.8806 29 1 6.0267 -3.2081 -1.0790 30 1 7.0131 -2.5508 1.1061 31 1 5.5115 -3.4806 1.3260 32 1 7.2154 0.4118 5.2968 33 1 5.9444 -4.7094 5.6300 34 1 4.6732 -3.7589 6.4525 35 1 7.5389 -3.8430 6.9898 36 1 7.7735 -1.6130 7.3280 37 1 6.0364 -1.4501 7.7175 38 1 3.4784 -2.3457 1.9551 39 1 3.4868 -0.5824 2.1971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:18 Heat of formation + Delta-G solvation = 49.699434 kcal Electronic energy + Delta-G solvation = -21284.879104 eV Core-core repulsion = 18226.738784 eV Total energy + Delta-G solvation = -3058.140321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.70283 -40.23978 -38.34393 -35.57397 -34.72789 -33.91888 -32.12893 -31.18432 -29.12985 -27.07735 -26.44914 -24.95885 -23.35916 -22.94841 -22.65569 -20.62307 -19.25510 -19.02574 -18.23184 -17.39481 -16.57394 -16.38342 -16.12794 -15.87395 -15.40772 -15.27583 -14.86486 -14.69724 -14.46588 -14.31375 -14.09234 -13.73661 -13.46174 -13.12089 -13.02510 -12.81622 -12.69092 -12.20464 -11.97469 -11.77080 -11.76744 -11.46952 -11.10389 -11.08361 -10.71842 -10.56344 -10.33606 -9.98273 -9.61832 -8.35100 -6.39412 -0.36980 -0.02058 1.31061 1.33943 1.47661 2.09757 2.31493 2.48164 2.68337 3.02317 3.05466 3.35552 3.56162 3.63349 3.92683 4.03522 4.08279 4.12057 4.24211 4.43646 4.47256 4.49936 4.63881 4.66571 4.67634 4.75004 4.80918 4.87744 4.90926 5.05233 5.09883 5.19581 5.29620 5.54317 5.55188 5.59712 5.69022 5.81340 6.15777 6.25176 6.29734 6.69561 7.01628 7.28064 8.81222 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.005233 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.704127 B = 5348.978268 C = 5715.959102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.258 1.258 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.516 4.516 8 H 0.036 0.964 9 C 0.021 3.979 10 H 0.037 0.963 11 C -0.103 4.103 12 C -0.108 4.108 13 C 0.075 3.925 14 N -0.490 5.490 15 C 0.474 3.526 16 N -0.522 5.522 17 C 0.168 3.832 18 C -0.243 4.243 19 C 0.124 3.876 20 N -0.549 5.549 21 C 0.095 3.905 22 N -0.641 5.641 23 C 0.100 3.900 24 C 0.098 3.902 25 H 0.267 0.733 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.209 0.791 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.356 0.644 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.025 0.975 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.122 -4.940 13.503 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.002 3.998 10 H 0.055 0.945 11 C -0.141 4.141 12 C -0.145 4.145 13 C -0.051 4.051 14 N -0.215 5.215 15 C 0.120 3.880 16 N -0.237 5.237 17 C 0.002 3.998 18 C -0.249 4.249 19 C -0.027 4.027 20 N -0.268 5.268 21 C -0.036 4.036 22 N -0.267 5.267 23 C -0.030 4.030 24 C -0.029 4.029 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.226 0.774 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.044 0.956 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.411 -4.416 12.930 22.927 hybrid contribution -0.183 0.329 0.016 0.377 sum 18.228 -4.087 12.946 22.728 Atomic orbital electron populations 1.70045 1.08063 1.28139 1.52011 1.25873 0.95363 1.02676 0.93822 0.85901 0.79139 0.79119 0.79872 1.18304 1.21386 1.18080 1.21200 0.91366 0.93201 1.49649 0.94542 1.19141 0.93681 0.96623 0.90392 0.94464 1.21544 0.94711 0.97882 0.99957 1.21644 0.95876 1.03303 0.93712 1.22064 0.98617 0.90086 0.94359 1.59439 1.12087 1.46129 1.03845 1.21294 0.90754 0.84742 0.91234 1.68262 1.12860 1.28370 1.14216 1.23246 0.92030 0.97707 0.86796 1.23229 1.03154 0.96828 1.01662 1.23540 0.90391 0.98549 0.90193 1.67825 1.21176 1.28836 1.08976 1.21613 1.00404 0.95293 0.86267 1.63584 1.15029 1.06008 1.42112 1.21499 1.05136 0.88609 0.87729 1.22245 0.81946 0.98169 1.00525 0.92399 0.93564 0.91835 0.91179 0.88357 0.90413 0.93988 0.77441 0.87620 0.87056 0.82710 0.86313 0.87213 0.95633 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 2 C 0.02 1.24 5.47 84.65 0.46 1.70 16 3 Si 0.94 46.47 27.01 68.60 1.85 48.32 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.26 -12.67 6.79 99.48 0.67 -11.99 16 7 C -0.52 -30.12 8.86 25.60 0.23 -29.89 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 9 C 0.02 1.03 1.94 -11.49 -0.02 1.01 16 10 H 0.04 1.85 5.25 -2.39 -0.01 1.84 16 11 C -0.10 -4.15 5.27 30.67 0.16 -3.99 16 12 C -0.11 -3.44 6.09 30.65 0.19 -3.25 16 13 C 0.08 2.57 5.18 86.33 0.45 3.02 16 14 N -0.49 -20.02 4.71 -708.83 -3.34 -23.36 16 15 C 0.47 18.08 6.24 261.44 1.63 19.71 16 16 N -0.52 -18.17 10.47 -198.09 -2.07 -20.24 16 17 C 0.17 4.04 11.30 84.62 0.96 5.00 16 18 C -0.24 -5.12 6.32 -19.69 -0.12 -5.25 16 19 C 0.12 3.27 7.50 42.72 0.32 3.59 16 20 N -0.55 -19.20 9.71 -185.72 -1.80 -21.00 16 21 C 0.10 1.70 7.45 85.43 0.64 2.33 16 22 N -0.64 -8.13 7.72 -515.20 -3.98 -12.11 16 23 C 0.10 1.21 7.45 85.39 0.64 1.85 16 24 C 0.10 4.64 4.57 86.32 0.39 5.03 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 31 H 0.04 1.47 7.91 -2.39 -0.02 1.45 16 32 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.36 3.18 8.92 -89.69 -0.80 2.38 16 36 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.03 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -74.95 314.19 -2.90 -77.86 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.23 Total: 9.16 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.91 Total: 0.86 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -10.90 Total: -136.19 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.85 Total: 48.32 kcal Total: -74.95 -2.90 -77.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.555 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds