Wall clock time and date at job start Mon Mar 30 2020 01:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47507 * 2 1 4 4 H 1.08997 * 109.47000 * 54.99775 * 3 2 1 5 5 C 1.53001 * 109.46536 * 294.99954 * 3 2 1 6 6 C 1.50697 * 109.46851 * 174.99903 * 3 2 1 7 7 N 1.31616 * 118.62772 * 60.00356 * 6 3 2 8 8 C 1.33126 * 120.73303 * 179.97438 * 7 6 3 9 9 N 1.36799 * 134.31644 * 180.02562 * 8 7 6 10 10 H 0.97007 * 124.99793 * 359.95217 * 9 8 7 11 11 C 1.37050 * 110.01989 * 179.97438 * 9 8 7 12 12 C 1.34398 * 109.81617 * 359.97438 * 11 9 8 13 13 C 1.40842 * 118.54438 * 359.97438 * 8 7 6 14 14 C 1.40382 * 118.64419 * 0.02562 * 13 8 7 15 15 N 1.38197 * 120.85168 * 179.97438 * 14 13 8 16 16 C 1.46497 * 120.00002 * 173.55765 * 15 14 13 17 17 C 1.36906 * 120.00319 * 353.55867 * 15 14 13 18 18 H 1.07994 * 119.99760 * 323.44356 * 17 15 14 19 19 C 1.38826 * 120.00228 * 143.70953 * 17 15 14 20 20 N 1.31550 * 119.99938 * 353.07211 * 19 17 15 21 21 Si 1.86804 * 120.00032 * 173.06308 * 19 17 15 22 22 H 1.48502 * 109.46631 * 90.00521 * 21 19 17 23 23 H 1.48499 * 109.47000 * 210.00103 * 21 19 17 24 24 H 1.48496 * 109.47170 * 330.00756 * 21 19 17 25 25 N 1.31991 * 118.62445 * 240.26361 * 6 3 2 26 26 H 1.09002 * 109.46914 * 300.00260 * 1 2 3 27 27 H 1.09004 * 109.46631 * 59.99851 * 1 2 3 28 28 H 1.08993 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46914 * 239.99739 * 2 1 3 30 30 H 1.09004 * 109.46631 * 120.00149 * 2 1 3 31 31 H 1.08993 * 109.47497 * 60.00096 * 5 3 2 32 32 H 1.09005 * 109.46659 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47330 * 299.99619 * 5 3 2 34 34 H 1.07990 * 125.09531 * 179.97438 * 11 9 8 35 35 H 1.08003 * 126.58604 * 179.97438 * 12 11 9 36 36 H 1.09008 * 109.47654 * 265.34400 * 16 15 14 37 37 H 1.09003 * 109.47385 * 25.34443 * 16 15 14 38 38 H 1.09004 * 109.47516 * 145.34760 * 16 15 14 39 39 H 0.96998 * 119.99686 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5420 1.4441 0.1239 7 7 4.2519 0.8384 -0.8042 8 6 5.5813 0.8146 -0.7367 9 7 6.5687 0.2842 -1.5209 10 1 6.4214 -0.2130 -2.3407 11 6 7.7970 0.5581 -0.9780 12 6 7.6468 1.2634 0.1561 13 6 6.2114 1.4523 0.3496 14 6 5.4119 2.0851 1.3145 15 7 5.9822 2.7241 2.3991 16 6 5.1433 3.4976 3.3178 17 6 7.3311 2.6343 2.6150 18 1 7.8525 1.7137 2.3982 19 6 8.0278 3.7248 3.1178 20 7 7.4222 4.8841 3.2585 21 14 9.8250 3.5458 3.5948 22 1 10.6815 3.8547 2.4216 23 1 10.1401 4.4871 4.6992 24 1 10.0821 2.1534 4.0423 25 7 4.0903 2.0485 1.1613 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5491 2.1252 -1.3970 32 1 1.9992 3.1540 -1.3076 33 1 2.0700 1.5874 -2.1492 34 1 8.7437 0.2529 -1.3985 35 1 8.4359 1.6212 0.8010 36 1 5.1496 4.5463 3.0202 37 1 4.1224 3.1170 3.2855 38 1 5.5336 3.4053 4.3314 39 1 7.9089 5.6459 3.6102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:36 Heat of formation + Delta-G solvation = 81.709137 kcal Electronic energy + Delta-G solvation = -21403.250209 eV Core-core repulsion = 18346.497933 eV Total energy + Delta-G solvation = -3056.752276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68540 -38.03252 -36.72388 -34.95908 -32.44758 -30.84532 -30.19101 -29.54570 -27.61829 -26.43766 -24.60740 -24.46471 -21.95485 -21.24598 -19.84797 -19.55439 -18.47499 -16.72097 -16.03972 -15.45803 -14.87936 -14.51188 -14.46657 -14.22048 -13.85013 -13.25585 -13.12501 -12.88249 -12.59280 -12.45726 -12.36857 -11.89194 -11.62352 -11.43622 -11.31878 -11.21269 -10.92721 -10.75486 -10.55553 -10.47189 -10.33771 -10.31385 -9.76938 -9.41782 -9.11531 -8.03369 -7.91453 -7.85795 -6.72110 -6.38184 -4.07452 2.16497 2.68196 3.08720 3.11984 3.14850 3.58067 3.60054 3.92029 4.61560 4.76449 4.96399 5.10465 5.24977 5.42171 5.55787 5.64298 5.69108 5.84927 5.87787 5.90571 6.11620 6.18633 6.25260 6.27876 6.37628 6.38248 6.58314 6.65122 6.67730 6.77273 6.81569 6.88088 7.18932 7.23562 7.34327 7.38903 7.83363 8.01610 8.03935 8.35653 8.64501 9.10544 9.32868 9.76425 10.49595 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.005926 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.566552 B = 4723.666261 C = 5695.627232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.012 4.012 4 H 0.087 0.913 5 C -0.136 4.136 6 C 0.385 3.615 7 N -0.615 5.615 8 C 0.333 3.667 9 N -0.577 5.577 10 H 0.406 0.594 11 C -0.032 4.032 12 C -0.126 4.126 13 C -0.261 4.261 14 C 0.432 3.568 15 N -0.391 5.391 16 C 0.112 3.888 17 C -0.316 4.316 18 H 0.103 0.897 19 C 0.041 3.959 20 N -0.861 5.861 21 Si 0.926 3.074 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.266 1.266 25 N -0.625 5.625 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -5.968 -5.330 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.032 4.032 4 H 0.105 0.895 5 C -0.194 4.194 6 C 0.112 3.888 7 N -0.349 5.349 8 C 0.097 3.903 9 N -0.185 5.185 10 H 0.242 0.758 11 C -0.155 4.155 12 C -0.153 4.153 13 C -0.275 4.275 14 C 0.183 3.817 15 N -0.079 5.079 16 C -0.031 4.031 17 C -0.446 4.446 18 H 0.121 0.879 19 C -0.167 4.167 20 N -0.495 5.495 21 Si 0.751 3.249 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.190 1.190 25 N -0.359 5.359 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.186 -5.649 -5.129 9.225 hybrid contribution 1.956 -0.089 -0.029 1.958 sum -3.230 -5.737 -5.157 8.363 Atomic orbital electron populations 1.21828 0.96122 1.01109 1.01738 1.21448 0.94892 0.95791 1.02488 1.19768 0.87434 0.96865 0.99158 0.89488 1.21761 1.00220 1.00314 0.97079 1.21904 0.95177 0.87221 0.84518 1.66900 1.03081 1.31420 1.33504 1.18106 0.88013 0.94263 0.89941 1.41212 1.04057 1.49781 1.23440 0.75815 1.21510 0.87188 1.08162 0.98678 1.21923 0.94733 1.01311 0.97288 1.19538 0.94847 1.13026 1.00085 1.18246 0.87214 0.91227 0.85055 1.42338 1.06597 1.41452 1.17500 1.21534 0.92579 0.96495 0.92483 1.19801 0.82285 0.98977 1.43491 0.87940 1.25589 1.00350 0.94244 0.96506 1.69994 1.37506 1.00574 1.41402 0.85938 0.81588 0.78771 0.78616 1.19756 1.20518 1.19004 1.67727 1.10224 1.31004 1.26936 0.92843 0.92551 0.93168 0.91162 0.92461 0.92551 0.93120 0.91851 0.82149 0.83161 0.91715 0.92968 0.92973 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.11 -1.56 5.25 -26.73 -0.14 -1.70 16 3 C -0.01 -0.19 2.71 -91.77 -0.25 -0.44 16 4 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 5 C -0.14 -1.99 8.84 37.16 0.33 -1.66 16 6 C 0.38 8.23 6.34 -157.18 -1.00 7.24 16 7 N -0.62 -13.24 9.85 -10.03 -0.10 -13.34 16 8 C 0.33 7.29 8.48 -155.85 -1.32 5.97 16 9 N -0.58 -10.19 6.03 -12.11 -0.07 -10.26 16 10 H 0.41 5.70 8.96 -40.82 -0.37 5.34 16 11 C -0.03 -0.55 11.83 -16.58 -0.20 -0.74 16 12 C -0.13 -2.66 9.47 -37.80 -0.36 -3.02 16 13 C -0.26 -6.25 5.98 -104.97 -0.63 -6.88 16 14 C 0.43 11.00 7.37 -154.73 -1.14 9.86 16 15 N -0.39 -10.10 3.04 -122.10 -0.37 -10.47 16 16 C 0.11 2.70 8.93 59.85 0.53 3.23 16 17 C -0.32 -8.05 7.67 -15.07 -0.12 -8.16 16 18 H 0.10 2.54 5.40 -52.49 -0.28 2.26 16 19 C 0.04 1.01 5.26 -17.45 -0.09 0.92 16 20 N -0.86 -22.33 11.24 55.49 0.62 -21.70 16 21 Si 0.93 18.98 29.56 -169.99 -5.02 13.95 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 N -0.63 -14.97 9.02 -9.82 -0.09 -15.06 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.06 8.11 -51.93 -0.42 0.63 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.96 7.99 -51.93 -0.42 0.55 16 34 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.15 3.15 5.92 -52.48 -0.31 2.84 16 36 H 0.06 1.64 7.17 -51.92 -0.37 1.27 16 37 H 0.05 1.18 7.19 -51.93 -0.37 0.80 16 38 H 0.05 1.23 7.98 -51.93 -0.41 0.81 16 39 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -29.53 316.76 -9.58 -39.11 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.31 Total: 9.75 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -4.01 Total: 3.25 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -0.01 Total: -70.84 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.53 -9.58 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.815 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds