Wall clock time and date at job start Mon Mar 30 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47361 * 2 1 4 4 C 1.52999 * 109.47361 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47486 * 179.97438 * 4 3 2 6 6 C 1.36906 * 120.00084 * 89.99606 * 5 4 3 7 7 H 1.08007 * 119.99922 * 5.04728 * 6 5 4 8 8 C 1.38821 * 120.00218 * 184.76366 * 6 5 4 9 9 N 1.31546 * 120.00014 * 352.39729 * 8 6 5 10 10 Si 1.86802 * 120.00059 * 172.39030 * 8 6 5 11 11 H 1.48499 * 109.47156 * 94.99521 * 10 8 6 12 12 H 1.48497 * 109.47200 * 214.99584 * 10 8 6 13 13 H 1.48499 * 109.47053 * 334.99564 * 10 8 6 14 14 C 1.38192 * 120.00075 * 270.00620 * 5 4 3 15 15 N 1.33102 * 120.85891 * 92.52927 * 14 5 4 16 16 C 1.31982 * 121.03548 * 179.97438 * 15 14 5 17 17 N 1.31621 * 122.74996 * 0.02562 * 16 15 14 18 18 C 1.33113 * 120.73333 * 359.97438 * 17 16 15 19 19 N 1.36815 * 134.32393 * 180.02562 * 18 17 16 20 20 H 0.97002 * 124.98390 * 359.95116 * 19 18 17 21 21 C 1.37055 * 110.01771 * 179.26683 * 19 18 17 22 22 C 1.34397 * 109.82048 * 0.65944 * 21 19 18 23 23 C 1.50703 * 126.58978 * 179.44099 * 22 21 19 24 24 C 1.40389 * 120.85071 * 272.24539 * 14 5 4 25 25 H 1.09001 * 109.46958 * 299.99965 * 1 2 3 26 26 H 1.08996 * 109.47294 * 59.99676 * 1 2 3 27 27 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46958 * 240.00035 * 2 1 3 29 29 H 1.09006 * 109.47094 * 119.99838 * 2 1 3 30 30 H 1.09001 * 109.47056 * 60.00095 * 3 2 1 31 31 H 1.08997 * 109.46712 * 300.00159 * 3 2 1 32 32 H 1.08997 * 109.46956 * 59.99529 * 4 3 2 33 33 H 1.09004 * 109.47050 * 300.00386 * 4 3 2 34 34 H 0.96997 * 120.00220 * 175.00686 * 9 8 6 35 35 H 1.07998 * 118.62501 * 179.97438 * 16 15 14 36 36 H 1.07995 * 125.08911 * 180.12210 * 21 19 18 37 37 H 1.08995 * 109.46954 * 274.52757 * 23 22 21 38 38 H 1.09000 * 109.46949 * 34.52461 * 23 22 21 39 39 H 1.08999 * 109.46994 * 154.52212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2861 3.4697 1.1854 7 1 4.1842 2.9367 2.1192 8 6 4.6536 4.8084 1.1868 9 7 4.9287 5.4162 0.0531 10 14 4.7572 5.7468 2.7987 11 1 6.1573 5.7280 3.2933 12 1 4.3275 7.1516 2.5822 13 1 3.8692 5.1066 3.8021 14 6 4.2892 3.4744 -1.1970 15 7 3.3416 4.2176 -1.7638 16 6 3.5583 4.8411 -2.9067 17 7 4.7043 4.7702 -3.5503 18 6 5.7141 4.0518 -3.0643 19 7 6.9894 3.7890 -3.4843 20 1 7.3883 4.1321 -4.2992 21 6 7.6252 2.9822 -2.5771 22 6 6.7913 2.6895 -1.5645 23 6 7.0975 1.8222 -0.3707 24 6 5.5312 3.3733 -1.8437 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8890 33 1 3.9330 0.9287 0.8909 34 1 5.1147 6.3681 0.0458 35 1 2.7618 5.4335 -3.3321 36 1 8.6412 2.6271 -2.6670 37 1 6.9132 0.7781 -0.6234 38 1 8.1427 1.9486 -0.0883 39 1 6.4582 2.1127 0.4630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:16 Heat of formation + Delta-G solvation = 96.087521 kcal Electronic energy + Delta-G solvation = -21972.134019 eV Core-core repulsion = 18916.005237 eV Total energy + Delta-G solvation = -3056.128782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.65937 -37.67680 -36.33388 -34.26345 -32.04279 -31.28657 -30.77047 -28.98380 -27.72149 -25.73008 -24.58556 -23.28851 -22.16396 -21.13821 -20.37142 -18.70807 -17.92998 -17.20757 -15.74728 -15.26213 -14.88065 -14.61974 -14.17277 -13.78032 -13.56340 -13.35204 -13.29783 -12.63967 -12.40873 -12.25358 -12.03959 -11.91441 -11.54588 -11.29001 -11.20166 -11.00900 -10.81229 -10.69005 -10.53941 -10.34365 -9.99788 -9.83241 -9.53716 -9.11886 -8.93190 -7.91534 -7.79209 -7.16879 -7.01339 -5.80248 -3.35402 2.13539 2.76748 3.34460 3.40756 3.42992 3.53237 3.63440 4.36783 4.91740 5.23023 5.35258 5.39197 5.43024 5.47993 5.55428 5.58887 5.81167 5.92043 6.03554 6.14657 6.16742 6.24756 6.28345 6.32229 6.38308 6.44075 6.46347 6.54840 6.70591 6.80938 6.91270 7.04104 7.13296 7.30722 7.49579 7.61300 7.85901 8.04961 8.21079 8.62334 9.14815 9.61553 9.76922 10.06284 11.16594 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.011843 B = 0.009158 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.715898 B = 3056.642533 C = 4026.206027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.159 3.841 5 N -0.553 5.553 6 C -0.254 4.254 7 H 0.088 0.912 8 C 0.003 3.997 9 N -0.892 5.892 10 Si 0.917 3.083 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.596 3.404 15 N -0.555 5.555 16 C 0.326 3.674 17 N -0.579 5.579 18 C 0.312 3.688 19 N -0.585 5.585 20 H 0.407 0.593 21 C -0.002 4.002 22 C -0.111 4.111 23 C -0.080 4.080 24 C -0.185 4.185 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.260 0.740 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -8.189 -3.336 8.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.033 3.967 5 N -0.272 5.272 6 C -0.382 4.382 7 H 0.106 0.894 8 C -0.195 4.195 9 N -0.536 5.536 10 Si 0.746 3.254 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.355 3.645 15 N -0.276 5.276 16 C 0.034 3.966 17 N -0.304 5.304 18 C 0.074 3.926 19 N -0.194 5.194 20 H 0.242 0.758 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.198 4.198 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.187 0.813 36 H 0.179 0.821 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.497 -7.452 -3.778 8.370 hybrid contribution 0.918 0.803 0.703 1.408 sum 1.415 -6.650 -3.075 7.462 Atomic orbital electron populations 1.21750 0.96585 1.00549 1.01739 1.21503 0.95308 0.98131 1.01104 1.22227 0.98319 0.94665 1.02708 1.20863 0.92000 0.84163 0.99633 1.41216 1.75123 1.10196 1.00692 1.19283 1.41575 0.93244 0.84052 0.89381 1.24825 1.00188 0.97107 0.97396 1.69214 1.50636 1.09961 1.23807 0.86038 0.77539 0.79367 0.82406 1.21576 1.21679 1.20380 1.17016 0.84304 0.80277 0.82875 1.68411 1.37046 1.11237 1.10925 1.23854 0.91006 0.94035 0.87701 1.67140 1.00755 1.23846 1.38618 1.18312 0.86641 0.95727 0.91968 1.41205 1.09903 1.45722 1.22533 0.75768 1.21319 0.98164 1.00786 0.92219 1.20096 0.92641 1.02387 0.96873 1.20176 1.00839 0.96376 0.96319 1.20623 0.96692 1.04886 0.97579 0.92919 0.93002 0.93591 0.92780 0.92505 0.91758 0.92158 0.94197 0.92336 0.92696 0.81276 0.82121 0.93175 0.93371 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.88 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.16 3.10 5.65 -4.05 -0.02 3.08 16 5 N -0.55 -13.18 1.91 -114.72 -0.22 -13.40 16 6 C -0.25 -6.50 8.92 -15.07 -0.13 -6.64 16 7 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 8 C 0.00 0.08 5.43 -17.46 -0.09 -0.01 16 9 N -0.89 -25.39 9.75 55.49 0.54 -24.85 16 10 Si 0.92 21.65 29.56 -169.99 -5.03 16.63 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.60 14.88 3.66 -154.73 -0.57 14.31 16 15 N -0.55 -13.97 9.82 -13.67 -0.13 -14.10 16 16 C 0.33 7.47 12.23 -92.14 -1.13 6.34 16 17 N -0.58 -13.27 10.47 -13.88 -0.15 -13.42 16 18 C 0.31 7.05 8.48 -155.84 -1.32 5.73 16 19 N -0.59 -10.66 6.03 -12.10 -0.07 -10.73 16 20 H 0.41 5.96 8.96 -40.82 -0.37 5.60 16 21 C 0.00 -0.03 11.76 -16.57 -0.19 -0.22 16 22 C -0.11 -2.27 6.31 -102.84 -0.65 -2.92 16 23 C -0.08 -1.44 10.36 36.01 0.37 -1.07 16 24 C -0.19 -4.40 5.70 -104.96 -0.60 -5.00 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 33 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 35 H 0.17 3.25 8.06 -52.49 -0.42 2.83 16 36 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.89 6.52 -51.93 -0.34 1.55 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -31.34 325.85 -10.16 -41.50 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.74 Total: 5.92 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -4.28 Total: 7.55 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -0.03 Total: -76.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.34 -10.16 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.588 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds