Wall clock time and date at job start Mon Mar 30 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47361 * 2 1 4 4 C 1.52999 * 109.47361 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47486 * 179.97438 * 4 3 2 6 6 C 1.36906 * 120.00084 * 89.99606 * 5 4 3 7 7 H 1.08007 * 119.99922 * 5.04728 * 6 5 4 8 8 C 1.38821 * 120.00218 * 184.76366 * 6 5 4 9 9 N 1.31546 * 120.00014 * 352.39729 * 8 6 5 10 10 Si 1.86802 * 120.00059 * 172.39030 * 8 6 5 11 11 H 1.48499 * 109.47156 * 94.99521 * 10 8 6 12 12 H 1.48497 * 109.47200 * 214.99584 * 10 8 6 13 13 H 1.48499 * 109.47053 * 334.99564 * 10 8 6 14 14 C 1.38192 * 120.00075 * 270.00620 * 5 4 3 15 15 N 1.33102 * 120.85891 * 92.52927 * 14 5 4 16 16 C 1.31982 * 121.03548 * 179.97438 * 15 14 5 17 17 N 1.31621 * 122.74996 * 0.02562 * 16 15 14 18 18 C 1.33113 * 120.73333 * 359.97438 * 17 16 15 19 19 N 1.36815 * 134.32393 * 180.02562 * 18 17 16 20 20 H 0.97002 * 124.98390 * 359.95116 * 19 18 17 21 21 C 1.37055 * 110.01771 * 179.26683 * 19 18 17 22 22 C 1.34397 * 109.82048 * 0.65944 * 21 19 18 23 23 C 1.50703 * 126.58978 * 179.44099 * 22 21 19 24 24 C 1.40389 * 120.85071 * 272.24539 * 14 5 4 25 25 H 1.09001 * 109.46958 * 299.99965 * 1 2 3 26 26 H 1.08996 * 109.47294 * 59.99676 * 1 2 3 27 27 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46958 * 240.00035 * 2 1 3 29 29 H 1.09006 * 109.47094 * 119.99838 * 2 1 3 30 30 H 1.09001 * 109.47056 * 60.00095 * 3 2 1 31 31 H 1.08997 * 109.46712 * 300.00159 * 3 2 1 32 32 H 1.08997 * 109.46956 * 59.99529 * 4 3 2 33 33 H 1.09004 * 109.47050 * 300.00386 * 4 3 2 34 34 H 0.96997 * 120.00220 * 175.00686 * 9 8 6 35 35 H 1.07998 * 118.62501 * 179.97438 * 16 15 14 36 36 H 1.07995 * 125.08911 * 180.12210 * 21 19 18 37 37 H 1.08995 * 109.46954 * 274.52757 * 23 22 21 38 38 H 1.09000 * 109.46949 * 34.52461 * 23 22 21 39 39 H 1.08999 * 109.46994 * 154.52212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2861 3.4697 1.1854 7 1 4.1842 2.9367 2.1192 8 6 4.6536 4.8084 1.1868 9 7 4.9287 5.4162 0.0531 10 14 4.7572 5.7468 2.7987 11 1 6.1573 5.7280 3.2933 12 1 4.3275 7.1516 2.5822 13 1 3.8692 5.1066 3.8021 14 6 4.2892 3.4744 -1.1970 15 7 3.3416 4.2176 -1.7638 16 6 3.5583 4.8411 -2.9067 17 7 4.7043 4.7702 -3.5503 18 6 5.7141 4.0518 -3.0643 19 7 6.9894 3.7890 -3.4843 20 1 7.3883 4.1321 -4.2992 21 6 7.6252 2.9822 -2.5771 22 6 6.7913 2.6895 -1.5645 23 6 7.0975 1.8222 -0.3707 24 6 5.5312 3.3733 -1.8437 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8890 33 1 3.9330 0.9287 0.8909 34 1 5.1147 6.3681 0.0458 35 1 2.7618 5.4335 -3.3321 36 1 8.6412 2.6271 -2.6670 37 1 6.9132 0.7781 -0.6234 38 1 8.1427 1.9486 -0.0883 39 1 6.4582 2.1127 0.4630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:08 Heat of formation + Delta-G solvation = 79.741812 kcal Electronic energy + Delta-G solvation = -21972.842822 eV Core-core repulsion = 18916.005237 eV Total energy + Delta-G solvation = -3056.837585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.27362 -39.33533 -37.99443 -35.69060 -33.75659 -32.99022 -32.41399 -30.57907 -29.27394 -27.21869 -26.41703 -24.81308 -23.79768 -22.73581 -21.76072 -20.40623 -19.52510 -18.92164 -17.39474 -16.99699 -16.50273 -16.16728 -15.84978 -15.38448 -15.31709 -14.96608 -14.63028 -14.05943 -13.88318 -13.72518 -13.46086 -13.32195 -13.08228 -12.97810 -12.92285 -12.62491 -12.40663 -12.24493 -12.03963 -11.89697 -11.67199 -11.31955 -11.22240 -10.83796 -10.80992 -9.72091 -9.46913 -9.02365 -8.59554 -7.75088 -5.34163 0.47645 1.02063 1.45251 1.47860 1.55750 1.99480 2.14232 2.47689 3.16882 3.38429 3.54501 3.84228 4.10733 4.16643 4.21609 4.28823 4.42106 4.53271 4.59846 4.72228 4.74984 4.81561 4.95522 5.05542 5.07969 5.09830 5.13120 5.18666 5.32500 5.40683 5.49087 5.51022 5.57470 5.62558 5.70947 5.98820 6.13200 6.32446 6.52560 7.01362 7.17771 7.79535 7.98614 8.14065 9.13647 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.011843 B = 0.009158 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.715898 B = 3056.642533 C = 4026.206027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.157 3.843 5 N -0.563 5.563 6 C -0.244 4.244 7 H 0.097 0.903 8 C -0.051 4.051 9 N -0.915 5.915 10 Si 0.972 3.028 11 H -0.288 1.288 12 H -0.307 1.307 13 H -0.266 1.266 14 C 0.575 3.425 15 N -0.583 5.583 16 C 0.307 3.693 17 N -0.580 5.580 18 C 0.283 3.717 19 N -0.571 5.571 20 H 0.425 0.575 21 C 0.034 3.966 22 C -0.155 4.155 23 C -0.069 4.069 24 C -0.208 4.208 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.195 0.805 36 H 0.217 0.783 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -9.984 -3.358 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.167 4.167 4 C 0.033 3.967 5 N -0.282 5.282 6 C -0.372 4.372 7 H 0.114 0.886 8 C -0.246 4.246 9 N -0.562 5.562 10 Si 0.802 3.198 11 H -0.215 1.215 12 H -0.234 1.234 13 H -0.191 1.191 14 C 0.334 3.666 15 N -0.305 5.305 16 C 0.016 3.984 17 N -0.304 5.304 18 C 0.045 3.955 19 N -0.180 5.180 20 H 0.264 0.736 21 C -0.090 4.090 22 C -0.164 4.164 23 C -0.126 4.126 24 C -0.220 4.220 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.212 0.788 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.827 -9.287 -3.817 10.206 hybrid contribution 0.562 1.279 0.644 1.538 sum 2.389 -8.009 -3.173 8.940 Atomic orbital electron populations 1.21732 0.95413 1.01989 1.01316 1.21445 0.96302 0.95253 1.02260 1.22047 0.97182 0.97006 1.00428 1.21039 0.92823 0.82491 1.00384 1.41388 1.75441 1.11261 1.00098 1.19578 1.39279 0.93251 0.85101 0.88576 1.25480 1.01303 0.98198 0.99606 1.69497 1.52733 1.08630 1.25302 0.85157 0.77441 0.77325 0.79914 1.21506 1.23445 1.19089 1.17279 0.85027 0.80831 0.83422 1.68351 1.38002 1.12132 1.11996 1.24346 0.91964 0.94480 0.87644 1.67180 1.00942 1.23814 1.38504 1.18665 0.88110 0.96285 0.92482 1.41287 1.08389 1.45082 1.23280 0.73573 1.22129 0.99343 0.97551 0.89936 1.20490 0.92198 1.04425 0.99246 1.20072 1.01347 0.96981 0.94231 1.20977 0.97437 1.05531 0.98095 0.93164 0.93698 0.91177 0.91931 0.90953 0.93594 0.94800 0.93888 0.90876 0.94649 0.78850 0.76658 0.91244 0.91079 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.11 -3.06 5.93 30.59 0.18 -2.88 16 3 C -0.13 -4.58 5.54 30.59 0.17 -4.41 16 4 C 0.16 6.12 5.65 86.38 0.49 6.60 16 5 N -0.56 -27.18 1.91 -516.88 -0.99 -28.17 16 6 C -0.24 -12.61 8.92 84.04 0.75 -11.86 16 7 H 0.10 4.68 7.83 -2.91 -0.02 4.65 16 8 C -0.05 -2.79 5.43 84.88 0.46 -2.33 16 9 N -0.92 -53.54 9.75 21.65 0.21 -53.33 16 10 Si 0.97 45.32 29.56 68.60 2.03 47.35 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 C 0.57 29.27 3.66 133.44 0.49 29.76 16 15 N -0.58 -30.32 9.82 -197.15 -1.94 -32.25 16 16 C 0.31 14.45 12.23 180.88 2.21 16.67 16 17 N -0.58 -26.82 10.47 -197.82 -2.07 -28.89 16 18 C 0.28 12.71 8.48 134.00 1.14 13.84 16 19 N -0.57 -19.43 6.03 -192.21 -1.16 -20.59 16 20 H 0.43 11.22 8.96 -92.71 -0.83 10.39 16 21 C 0.03 1.06 11.76 83.00 0.98 2.04 16 22 C -0.15 -6.07 6.31 -18.71 -0.12 -6.19 16 23 C -0.07 -2.36 10.36 71.24 0.74 -1.62 16 24 C -0.21 -9.87 5.70 -20.09 -0.11 -9.99 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.62 8.04 -2.39 -0.02 1.61 16 33 H 0.07 2.58 8.04 -2.38 -0.02 2.56 16 34 H 0.24 14.54 8.32 -92.71 -0.77 13.77 16 35 H 0.20 7.65 8.06 -2.91 -0.02 7.63 16 36 H 0.22 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.27 6.52 -2.39 -0.02 2.25 16 Total: -1.00 -70.11 325.85 4.39 -65.72 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.22 Total: 23.31 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 8.08 Total: 26.84 kcal Atomic # 7 Polarization: -157.28 SS G_CDS: -5.94 Total: -163.23 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.11 4.39 -65.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.467 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds