Wall clock time and date at job start Mon Mar 30 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48506 * 109.47102 * 174.64382 * 3 2 1 5 5 H 1.48502 * 109.47287 * 294.63719 * 3 2 1 6 6 H 1.48496 * 109.47581 * 54.64289 * 3 2 1 7 7 C 1.37874 * 120.00229 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.84961 * 164.55348 * 7 2 1 9 9 C 1.53233 * 108.53453 * 231.34428 * 8 7 2 10 10 C 1.52962 * 109.40261 * 305.37366 * 9 8 7 11 11 H 1.08998 * 109.41129 * 303.56249 * 10 9 8 12 12 N 1.46499 * 109.40940 * 183.70295 * 10 9 8 13 13 C 1.39051 * 120.00070 * 154.99786 * 12 10 9 14 14 C 1.39637 * 120.20385 * 0.02562 * 13 12 10 15 15 C 1.38089 * 117.67394 * 179.97438 * 14 13 12 16 16 C 1.38929 * 118.54803 * 359.97438 * 15 14 13 17 17 N 1.31752 * 119.72199 * 0.02562 * 16 15 14 18 18 N 1.28389 * 122.18164 * 359.69838 * 17 16 15 19 19 C 1.51155 * 107.97984 * 180.02562 * 16 15 14 20 20 N 1.48068 * 105.76362 * 342.55305 * 19 16 15 21 21 C 1.48116 * 103.98008 * 27.51274 * 20 19 16 22 22 C 1.52956 * 109.82037 * 63.59960 * 10 9 8 23 23 C 1.51265 * 120.85036 * 344.54724 * 7 2 1 24 24 H 0.97005 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.62532 * 111.63121 * 8 7 2 26 26 H 1.08995 * 109.62613 * 351.05883 * 8 7 2 27 27 H 1.08995 * 109.48047 * 185.39537 * 9 8 7 28 28 H 1.08997 * 109.48091 * 65.35015 * 9 8 7 29 29 H 0.96998 * 120.00417 * 335.00194 * 12 10 9 30 30 H 1.08006 * 121.16552 * 0.02562 * 14 13 12 31 31 H 1.08999 * 110.19417 * 223.47146 * 19 16 15 32 32 H 1.09006 * 110.18800 * 101.62687 * 19 16 15 33 33 H 1.00900 * 110.99667 * 268.09757 * 20 19 16 34 34 H 1.09001 * 110.21532 * 213.51247 * 21 20 19 35 35 H 1.08999 * 110.21953 * 91.59524 * 21 20 19 36 36 H 1.09002 * 109.48093 * 56.37389 * 22 10 9 37 37 H 1.09000 * 109.48357 * 176.40482 * 22 10 9 38 38 H 1.09003 * 109.62430 * 8.94145 * 23 7 2 39 39 H 1.09000 * 109.63226 * 248.37384 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1307 5 1 1.9911 2.3383 -1.2726 6 1 1.7950 2.4516 1.1418 7 6 2.0046 -1.1940 -0.0005 8 6 3.4765 -1.2397 -0.3464 9 6 3.6899 -2.3040 -1.4279 10 6 3.1132 -3.6375 -0.9494 11 1 3.5733 -3.9114 0.0000 12 7 3.3951 -4.6750 -1.9445 13 6 3.4577 -6.0095 -1.5589 14 6 3.2520 -6.3656 -0.2244 15 6 3.3256 -7.7057 0.1004 16 6 3.5975 -8.6198 -0.9098 17 7 3.7783 -8.1951 -2.1438 18 7 3.7067 -6.9519 -2.4564 19 6 3.6223 -10.0006 -0.2954 20 7 3.7749 -9.7896 1.1622 21 6 3.1668 -8.4596 1.3969 22 6 1.6005 -3.5108 -0.7616 23 6 1.3085 -2.4918 0.3449 24 1 -0.4850 0.8401 0.0004 25 1 4.0533 -1.4990 0.5413 26 1 3.7947 -0.2672 -0.7220 27 1 4.7567 -2.4176 -1.6207 28 1 3.1853 -1.9976 -2.3441 29 1 3.5381 -4.4311 -2.8723 30 1 3.0419 -5.6190 0.5272 31 1 4.4667 -10.5701 -0.6836 32 1 2.6882 -10.5222 -0.5043 33 1 4.7482 -9.7942 1.4283 34 1 3.6912 -7.9420 2.2001 35 1 2.1105 -8.5665 1.6435 36 1 1.1453 -3.1757 -1.6937 37 1 1.1863 -4.4796 -0.4825 38 1 0.2337 -2.3237 0.4135 39 1 1.6845 -2.8670 1.2967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:22 Heat of formation + Delta-G solvation = 60.566340 kcal Electronic energy + Delta-G solvation = -20930.426739 eV Core-core repulsion = 17872.757643 eV Total energy + Delta-G solvation = -3057.669096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.28677 -38.35101 -37.33556 -34.73796 -32.39447 -31.80971 -30.32298 -29.79917 -28.18214 -26.77055 -25.17578 -22.73864 -22.10595 -21.68925 -21.24211 -19.63740 -18.10332 -17.01977 -16.23012 -16.18502 -15.83312 -15.07844 -14.68833 -14.49571 -14.14872 -13.68717 -13.37725 -13.22136 -12.91403 -12.76307 -12.40100 -12.29265 -12.16884 -11.85966 -11.28314 -11.15081 -11.05456 -10.90434 -10.51605 -10.25061 -10.03502 -9.78763 -9.67821 -9.41505 -9.29563 -9.11265 -8.92250 -8.48961 -7.70896 -6.25665 -4.12593 0.92696 1.27195 3.12729 3.19153 3.28798 3.30072 3.71871 3.87616 4.06295 4.17964 4.27770 4.69765 4.91883 4.95696 5.00707 5.18507 5.33736 5.40209 5.44967 5.58103 5.67474 5.67752 5.89508 5.99216 6.04143 6.23430 6.31806 6.42384 6.54023 6.60428 6.73672 6.84957 6.87596 6.94624 7.22323 7.32306 7.50987 7.55807 7.68068 7.79275 8.24028 8.82850 9.01148 9.41314 10.83818 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.035020 B = 0.004024 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.349306 B = 6955.866965 C = 7288.231584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.880 3.120 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.500 4.500 8 C -0.010 4.010 9 C -0.112 4.112 10 C 0.158 3.842 11 H 0.071 0.929 12 N -0.701 5.701 13 C 0.357 3.643 14 C -0.158 4.158 15 C -0.096 4.096 16 C -0.043 4.043 17 N -0.187 5.187 18 N -0.318 5.318 19 C 0.109 3.891 20 N -0.650 5.650 21 C 0.082 3.918 22 C -0.119 4.119 23 C 0.013 3.987 24 H 0.265 0.735 25 H 0.016 0.984 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.405 0.595 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.343 0.657 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -13.070 1.740 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.122 4.122 3 Si 0.707 3.293 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.518 4.518 8 C -0.049 4.049 9 C -0.150 4.150 10 C 0.054 3.946 11 H 0.089 0.911 12 N -0.331 5.331 13 C 0.113 3.887 14 C -0.192 4.192 15 C -0.108 4.108 16 C -0.196 4.196 17 N -0.028 5.028 18 N -0.170 5.170 19 C -0.023 4.023 20 N -0.276 5.276 21 C -0.048 4.048 22 C -0.158 4.158 23 C -0.025 4.025 24 H 0.075 0.925 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.241 0.759 30 H 0.168 0.832 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.158 0.842 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 6.559 -13.584 0.564 15.095 hybrid contribution 0.677 2.211 0.596 2.388 sum 7.236 -11.373 1.161 13.529 Atomic orbital electron populations 1.69909 1.06353 1.27127 1.48153 1.24823 0.94545 0.98693 0.94161 0.86770 0.80951 0.83686 0.77873 1.18581 1.20867 1.21066 1.19948 0.92312 0.92358 1.47195 1.19707 0.97245 0.94359 0.93550 1.21844 0.97508 0.94523 1.01170 1.21230 0.97308 0.86017 0.89998 0.91110 1.45110 1.74186 1.01167 1.12588 1.20137 0.89968 0.88142 0.90429 1.21274 1.05538 0.95937 0.96458 1.21932 0.95809 0.93856 0.99154 1.23737 1.05130 0.98722 0.92055 1.72204 1.06879 1.07002 1.16678 1.73107 1.20921 0.94711 1.28297 1.21230 1.04062 0.90933 0.86048 1.63565 1.22021 1.27504 1.14470 1.21500 1.02589 0.87441 0.93247 1.22096 0.93045 0.98470 1.02236 1.19367 0.99503 0.92081 0.91583 0.92483 0.96551 0.94360 0.94133 0.92119 0.75925 0.83209 0.89425 0.88075 0.84173 0.89226 0.87597 0.92462 0.95102 0.92256 0.97847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.18 12.81 55.43 0.71 -23.47 16 2 C 0.08 2.12 5.43 -17.82 -0.10 2.02 16 3 Si 0.88 19.82 27.63 -169.99 -4.70 15.13 16 4 H -0.26 -5.64 6.14 56.52 0.35 -5.29 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -12.23 5.44 -98.92 -0.54 -12.77 16 8 C -0.01 -0.22 5.47 -27.48 -0.15 -0.37 16 9 C -0.11 -2.05 5.40 -26.63 -0.14 -2.19 16 10 C 0.16 2.76 2.05 -67.97 -0.14 2.62 16 11 H 0.07 1.22 6.51 -51.93 -0.34 0.88 16 12 N -0.70 -11.27 5.24 -53.80 -0.28 -11.55 16 13 C 0.36 5.89 7.73 -154.70 -1.20 4.69 16 14 C -0.16 -2.35 8.90 -39.11 -0.35 -2.70 16 15 C -0.10 -1.25 6.33 -104.37 -0.66 -1.91 16 16 C -0.04 -0.59 7.55 -82.15 -0.62 -1.21 16 17 N -0.19 -3.11 11.50 33.74 0.39 -2.72 16 18 N -0.32 -5.59 11.53 31.27 0.36 -5.23 16 19 C 0.11 1.08 7.45 -4.11 -0.03 1.05 16 20 N -0.65 -5.76 7.71 -114.19 -0.88 -6.64 16 21 C 0.08 0.79 7.45 -4.25 -0.03 0.76 16 22 C -0.12 -2.37 5.45 -26.63 -0.15 -2.52 16 23 C 0.01 0.29 5.99 -27.49 -0.16 0.13 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.82 5.02 -51.93 -0.26 0.56 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.41 6.14 8.73 -40.82 -0.36 5.78 16 30 H 0.15 2.13 6.34 -52.48 -0.33 1.80 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.34 2.48 8.92 -39.29 -0.35 2.13 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.58 7.75 -51.93 -0.40 0.18 16 38 H 0.06 1.53 7.11 -51.93 -0.37 1.16 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -28.10 309.37 -9.41 -37.51 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.40 Total: 4.72 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -4.27 Total: -12.41 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.30 Total: -49.61 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.70 Total: 15.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.10 -9.41 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.075 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds