Wall clock time and date at job start Mon Mar 30 2020 01:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48506 * 109.47102 * 174.64382 * 3 2 1 5 5 H 1.48502 * 109.47287 * 294.63719 * 3 2 1 6 6 H 1.48496 * 109.47581 * 54.64289 * 3 2 1 7 7 C 1.37874 * 120.00229 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.84961 * 164.55348 * 7 2 1 9 9 C 1.53233 * 108.53453 * 231.34428 * 8 7 2 10 10 C 1.52962 * 109.40261 * 305.37366 * 9 8 7 11 11 H 1.08998 * 109.41129 * 303.56249 * 10 9 8 12 12 N 1.46499 * 109.40940 * 183.70295 * 10 9 8 13 13 C 1.39051 * 120.00070 * 154.99786 * 12 10 9 14 14 C 1.39637 * 120.20385 * 0.02562 * 13 12 10 15 15 C 1.38089 * 117.67394 * 179.97438 * 14 13 12 16 16 C 1.38929 * 118.54803 * 359.97438 * 15 14 13 17 17 N 1.31752 * 119.72199 * 0.02562 * 16 15 14 18 18 N 1.28389 * 122.18164 * 359.69838 * 17 16 15 19 19 C 1.51155 * 107.97984 * 180.02562 * 16 15 14 20 20 N 1.48068 * 105.76362 * 342.55305 * 19 16 15 21 21 C 1.48116 * 103.98008 * 27.51274 * 20 19 16 22 22 C 1.52956 * 109.82037 * 63.59960 * 10 9 8 23 23 C 1.51265 * 120.85036 * 344.54724 * 7 2 1 24 24 H 0.97005 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.62532 * 111.63121 * 8 7 2 26 26 H 1.08995 * 109.62613 * 351.05883 * 8 7 2 27 27 H 1.08995 * 109.48047 * 185.39537 * 9 8 7 28 28 H 1.08997 * 109.48091 * 65.35015 * 9 8 7 29 29 H 0.96998 * 120.00417 * 335.00194 * 12 10 9 30 30 H 1.08006 * 121.16552 * 0.02562 * 14 13 12 31 31 H 1.08999 * 110.19417 * 223.47146 * 19 16 15 32 32 H 1.09006 * 110.18800 * 101.62687 * 19 16 15 33 33 H 1.00900 * 110.99667 * 268.09757 * 20 19 16 34 34 H 1.09001 * 110.21532 * 213.51247 * 21 20 19 35 35 H 1.08999 * 110.21953 * 91.59524 * 21 20 19 36 36 H 1.09002 * 109.48093 * 56.37389 * 22 10 9 37 37 H 1.09000 * 109.48357 * 176.40482 * 22 10 9 38 38 H 1.09003 * 109.62430 * 8.94145 * 23 7 2 39 39 H 1.09000 * 109.63226 * 248.37384 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1307 5 1 1.9911 2.3383 -1.2726 6 1 1.7950 2.4516 1.1418 7 6 2.0046 -1.1940 -0.0005 8 6 3.4765 -1.2397 -0.3464 9 6 3.6899 -2.3040 -1.4279 10 6 3.1132 -3.6375 -0.9494 11 1 3.5733 -3.9114 0.0000 12 7 3.3951 -4.6750 -1.9445 13 6 3.4577 -6.0095 -1.5589 14 6 3.2520 -6.3656 -0.2244 15 6 3.3256 -7.7057 0.1004 16 6 3.5975 -8.6198 -0.9098 17 7 3.7783 -8.1951 -2.1438 18 7 3.7067 -6.9519 -2.4564 19 6 3.6223 -10.0006 -0.2954 20 7 3.7749 -9.7896 1.1622 21 6 3.1668 -8.4596 1.3969 22 6 1.6005 -3.5108 -0.7616 23 6 1.3085 -2.4918 0.3449 24 1 -0.4850 0.8401 0.0004 25 1 4.0533 -1.4990 0.5413 26 1 3.7947 -0.2672 -0.7220 27 1 4.7567 -2.4176 -1.6207 28 1 3.1853 -1.9976 -2.3441 29 1 3.5381 -4.4311 -2.8723 30 1 3.0419 -5.6190 0.5272 31 1 4.4667 -10.5701 -0.6836 32 1 2.6882 -10.5222 -0.5043 33 1 4.7482 -9.7942 1.4283 34 1 3.6912 -7.9420 2.2001 35 1 2.1105 -8.5665 1.6435 36 1 1.1453 -3.1757 -1.6937 37 1 1.1863 -4.4796 -0.4825 38 1 0.2337 -2.3237 0.4135 39 1 1.6845 -2.8670 1.2967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:16 Heat of formation + Delta-G solvation = 41.080061 kcal Electronic energy + Delta-G solvation = -20931.271728 eV Core-core repulsion = 17872.757643 eV Total energy + Delta-G solvation = -3058.514085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.38914 -39.63822 -38.48715 -36.22571 -33.97934 -32.98874 -31.61808 -31.43807 -29.37462 -28.08515 -26.26688 -24.15784 -23.53788 -22.88091 -22.62636 -21.18314 -19.29248 -18.19705 -17.85514 -17.18615 -16.86246 -16.38432 -16.23694 -15.97109 -15.20772 -15.02291 -14.80032 -14.47409 -14.17534 -14.07159 -13.86427 -13.62525 -13.46187 -13.02289 -12.82268 -12.80671 -12.69062 -12.16875 -12.06060 -11.83017 -11.63846 -11.37445 -10.90562 -10.83759 -10.67023 -10.55681 -10.38806 -10.04250 -8.98592 -8.20111 -6.09025 -0.19252 0.14213 1.38170 1.45043 1.53052 1.91309 2.41583 2.56232 3.02997 3.08407 3.11214 3.21466 3.63933 3.79408 3.93487 4.15464 4.16216 4.31437 4.37017 4.50083 4.61455 4.66588 4.69030 4.84089 4.86999 4.94001 4.96512 4.98938 5.04618 5.17061 5.23933 5.26879 5.37691 5.56150 5.62540 5.72681 5.83519 6.01654 6.22966 6.32509 6.54695 6.95521 7.46802 7.83981 8.91144 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.035020 B = 0.004024 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.349306 B = 6955.866965 C = 7288.231584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.241 1.241 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.505 4.505 8 C -0.013 4.013 9 C -0.106 4.106 10 C 0.174 3.826 11 H 0.081 0.919 12 N -0.700 5.700 13 C 0.344 3.656 14 C -0.169 4.169 15 C -0.091 4.091 16 C -0.041 4.041 17 N -0.218 5.218 18 N -0.346 5.346 19 C 0.112 3.888 20 N -0.642 5.642 21 C 0.085 3.915 22 C -0.107 4.107 23 C 0.010 3.990 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.408 0.592 30 H 0.156 0.844 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.355 0.645 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.022 0.978 39 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 -14.601 2.706 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.164 1.164 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.524 4.524 8 C -0.052 4.052 9 C -0.145 4.145 10 C 0.070 3.930 11 H 0.099 0.901 12 N -0.331 5.331 13 C 0.101 3.899 14 C -0.202 4.202 15 C -0.103 4.103 16 C -0.196 4.196 17 N -0.057 5.057 18 N -0.197 5.197 19 C -0.020 4.020 20 N -0.269 5.269 21 C -0.045 4.045 22 C -0.146 4.146 23 C -0.028 4.028 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.244 0.756 30 H 0.174 0.826 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.172 0.828 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 8.629 -15.150 1.518 17.501 hybrid contribution 0.027 2.505 0.369 2.533 sum 8.655 -12.644 1.886 15.439 Atomic orbital electron populations 1.70047 1.07962 1.27497 1.50990 1.25593 0.95098 1.01905 0.94724 0.85916 0.80905 0.80058 0.77242 1.16414 1.21265 1.21639 1.20590 0.94180 0.92477 1.45149 1.19737 0.94965 0.95538 0.94921 1.21722 0.99275 0.93798 0.99687 1.20893 0.95048 0.86255 0.90824 0.90121 1.44826 1.74929 1.00933 1.12405 1.20251 0.90604 0.87943 0.91143 1.21414 1.05855 0.97037 0.95923 1.22397 0.93956 0.93222 1.00766 1.24448 1.02947 1.00869 0.91344 1.72124 1.08475 1.06708 1.18379 1.73012 1.22088 0.95331 1.29296 1.21385 1.05346 0.88948 0.86288 1.63568 1.23058 1.26791 1.13436 1.21644 1.03551 0.87300 0.91968 1.21889 0.95291 0.97653 0.99781 1.19324 0.97231 0.93088 0.93179 0.92880 0.95370 0.94341 0.91322 0.92887 0.75553 0.82620 0.87636 0.87204 0.82847 0.87008 0.86747 0.94668 0.94242 0.95932 0.96968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.70 12.81 21.45 0.27 -52.42 16 2 C 0.03 1.35 5.43 84.65 0.46 1.81 16 3 Si 0.93 40.75 27.63 68.60 1.90 42.64 16 4 H -0.24 -9.61 6.14 99.48 0.61 -9.00 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.50 -24.65 5.44 -16.17 -0.09 -24.74 16 8 C -0.01 -0.55 5.47 30.11 0.16 -0.38 16 9 C -0.11 -3.67 5.40 30.66 0.17 -3.50 16 10 C 0.17 5.80 2.05 44.96 0.09 5.90 16 11 H 0.08 2.57 6.51 -2.39 -0.02 2.56 16 12 N -0.70 -21.70 5.24 -324.12 -1.70 -23.40 16 13 C 0.34 11.00 7.73 133.14 1.03 12.03 16 14 C -0.17 -4.72 8.90 22.57 0.20 -4.52 16 15 C -0.09 -2.17 6.33 -19.70 -0.12 -2.29 16 16 C -0.04 -1.05 7.55 42.88 0.32 -0.72 16 17 N -0.22 -7.03 11.50 -47.16 -0.54 -7.57 16 18 N -0.35 -11.99 11.53 -54.99 -0.63 -12.62 16 19 C 0.11 1.87 7.45 85.48 0.64 2.51 16 20 N -0.64 -8.98 7.71 -515.17 -3.97 -12.96 16 21 C 0.09 1.34 7.45 85.36 0.64 1.98 16 22 C -0.11 -4.24 5.45 30.66 0.17 -4.07 16 23 C 0.01 0.46 5.99 30.11 0.18 0.64 16 24 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.55 5.02 -2.39 -0.01 1.54 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.41 12.03 8.73 -92.71 -0.81 11.22 16 30 H 0.16 4.08 6.34 -2.91 -0.02 4.07 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.35 3.73 8.92 -89.69 -0.80 2.93 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.47 7.75 -2.39 -0.02 1.45 16 38 H 0.02 1.19 7.11 -2.39 -0.02 1.17 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -61.71 309.37 -1.45 -63.15 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.61 Total: 18.54 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 3.84 Total: -15.36 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -6.57 Total: -108.98 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.90 Total: 42.64 kcal Total: -61.71 -1.45 -63.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.234 kcal (2) G-P(sol) polarization free energy of solvation -61.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds