Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36353 * 120.08268 * 2 1 4 4 C 1.39547 * 120.15936 * 179.97438 * 3 2 1 5 5 N 1.38866 * 119.84055 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99752 * 173.01200 * 5 4 3 7 7 C 1.52995 * 109.52385 * 305.50191 * 6 5 4 8 8 C 1.53115 * 109.51894 * 185.37319 * 6 5 4 9 9 C 1.53176 * 109.21080 * 297.69150 * 8 6 5 10 10 N 1.46849 * 109.55160 * 300.85861 * 9 8 6 11 11 C 1.46855 * 111.19758 * 61.74413 * 10 9 8 12 12 C 1.53032 * 109.52187 * 298.25687 * 11 10 9 13 13 C 1.39590 * 120.31714 * 359.95147 * 4 3 2 14 14 C 1.36319 * 120.16072 * 359.78401 * 13 4 3 15 15 C 1.40868 * 120.07991 * 179.97438 * 2 1 3 16 16 C 1.41142 * 120.15453 * 0.02562 * 15 2 1 17 17 H 1.07997 * 120.00135 * 334.34600 * 16 15 2 18 18 C 1.39864 * 119.99584 * 154.34759 * 16 15 2 19 19 N 1.30900 * 120.00223 * 334.48760 * 18 16 15 20 20 Si 1.86807 * 119.99639 * 154.49196 * 18 16 15 21 21 H 1.48505 * 109.46844 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47007 * 299.99573 * 20 18 16 23 23 H 1.48502 * 109.47181 * 59.99736 * 20 18 16 24 24 H 1.08992 * 109.47324 * 270.02780 * 1 2 3 25 25 H 1.09001 * 109.47129 * 30.02851 * 1 2 3 26 26 H 1.08999 * 109.47028 * 150.02526 * 1 2 3 27 27 H 1.07994 * 119.92119 * 359.96831 * 3 2 1 28 28 H 0.97002 * 119.99730 * 353.01356 * 5 4 3 29 29 H 1.08999 * 109.47366 * 65.07234 * 7 6 5 30 30 H 1.08997 * 109.46917 * 185.07153 * 7 6 5 31 31 H 1.08999 * 109.46990 * 305.06750 * 7 6 5 32 32 H 1.09001 * 109.50416 * 57.69428 * 8 6 5 33 33 H 1.09001 * 109.50317 * 177.81391 * 8 6 5 34 34 H 1.08998 * 109.44598 * 180.83626 * 9 8 6 35 35 H 1.08993 * 109.43851 * 60.88104 * 9 8 6 36 36 H 1.00903 * 110.99668 * 185.83459 * 10 9 8 37 37 H 1.09003 * 109.45937 * 178.23634 * 11 10 9 38 38 H 1.09001 * 109.44858 * 58.26544 * 11 10 9 39 39 H 1.09002 * 109.50160 * 299.23558 * 12 11 10 40 40 H 1.08997 * 109.50259 * 179.12275 * 12 11 10 41 41 H 1.07999 * 119.91932 * 180.02562 * 13 4 3 42 42 H 1.07998 * 120.08397 * 180.22747 * 14 13 4 43 43 H 0.96998 * 120.00346 * 353.85902 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3872 0.0000 6 6 5.7321 2.3980 0.1549 7 6 6.1168 1.6376 1.4256 8 6 6.2253 3.8441 0.2548 9 6 5.8903 4.5817 -1.0452 10 7 6.5344 3.9017 -2.1761 11 6 6.0410 2.5259 -2.3194 12 6 6.3806 1.7271 -1.0591 13 6 4.2922 -0.0223 0.0021 14 6 3.6221 -1.2094 0.0076 15 6 2.2131 -1.2190 0.0005 16 6 1.5124 -2.4442 0.0005 17 1 0.5123 -2.4943 0.4051 18 6 2.1133 -3.5934 -0.5234 19 7 3.0514 -3.4861 -1.4300 20 14 1.5770 -5.2813 0.0707 21 1 2.3611 -6.3266 -0.6349 22 1 1.8113 -5.3888 1.5332 23 1 0.1319 -5.4703 -0.2143 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6506 2.1152 -0.0005 28 1 3.7923 3.2221 -0.1029 29 1 5.8478 0.5870 1.3159 30 1 7.1911 1.7224 1.5885 31 1 5.5855 2.0616 2.2776 32 1 5.7343 4.3390 1.0927 33 1 7.3043 3.8507 0.4089 34 1 6.2530 5.6078 -0.9840 35 1 4.8102 4.5865 -1.1916 36 1 6.4071 4.4223 -3.0311 37 1 6.5133 2.0589 -3.1837 38 1 4.9602 2.5407 -2.4598 39 1 7.4621 1.7004 -0.9255 40 1 6.0007 0.7104 -1.1592 41 1 5.3722 -0.0134 0.0029 42 1 4.1697 -2.1402 0.0125 43 1 3.2680 -2.6175 -1.8034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168186172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = 22.498018 kcal Electronic energy + Delta-G solvation = -21958.923977 eV Core-core repulsion = 19003.144458 eV Total energy + Delta-G solvation = -2955.779519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.78692 -37.71594 -35.07290 -33.42891 -31.64320 -31.03348 -30.48704 -27.93840 -27.28817 -25.95206 -24.28872 -22.87094 -21.79865 -20.81212 -20.12015 -18.39386 -17.69394 -16.59220 -16.07634 -14.91850 -14.71500 -14.44198 -14.16907 -14.01090 -13.65038 -13.41942 -12.97396 -12.67086 -12.54223 -12.18237 -11.96121 -11.87234 -11.63821 -11.50937 -11.42580 -11.22227 -11.06987 -10.96186 -10.93067 -10.68843 -10.34212 -10.20091 -10.00995 -9.48061 -9.13053 -8.96554 -8.56211 -8.36315 -7.49485 -7.00412 -6.46685 -4.05921 2.87978 2.96852 3.24354 3.38484 3.44603 4.15000 4.16352 4.33970 4.70656 4.82718 4.95917 5.13405 5.34018 5.45380 5.54203 5.59773 5.70050 5.83108 5.87519 6.00967 6.02459 6.06935 6.11985 6.15144 6.27275 6.32222 6.37495 6.45041 6.56655 6.64920 6.69417 6.89270 6.94919 7.06281 7.18179 7.36442 7.44900 7.57197 7.64650 7.95900 7.98127 8.27894 8.38169 8.52485 8.71740 8.99165 9.12222 10.27072 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.004915 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.289881 B = 5695.568041 C = 6072.387732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.147 4.147 4 C 0.092 3.908 5 N -0.751 5.751 6 C 0.193 3.807 7 C -0.173 4.173 8 C -0.115 4.115 9 C 0.060 3.940 10 N -0.691 5.691 11 C 0.064 3.936 12 C -0.139 4.139 13 C -0.161 4.161 14 C -0.180 4.180 15 C 0.069 3.931 16 C -0.530 4.530 17 H 0.071 0.929 18 C 0.039 3.961 19 N -0.813 5.813 20 Si 1.060 2.940 21 H -0.277 1.277 22 H -0.277 1.277 23 H -0.279 1.279 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.380 0.620 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.337 0.663 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 10.852 0.730 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.169 4.169 4 C -0.005 4.005 5 N -0.386 5.386 6 C 0.105 3.895 7 C -0.231 4.231 8 C -0.153 4.153 9 C -0.070 4.070 10 N -0.321 5.321 11 C -0.065 4.065 12 C -0.177 4.177 13 C -0.182 4.182 14 C -0.200 4.200 15 C 0.066 3.934 16 C -0.560 4.560 17 H 0.089 0.911 18 C -0.180 4.180 19 N -0.438 5.438 20 Si 0.884 3.116 21 H -0.202 1.202 22 H -0.203 1.203 23 H -0.205 1.205 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.213 0.787 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.129 8.947 0.938 10.885 hybrid contribution -1.390 2.221 -0.253 2.632 sum 4.739 11.167 0.686 12.150 Atomic orbital electron populations 1.20395 0.93675 1.00388 0.99606 1.19244 0.94161 0.92632 1.10486 1.19720 0.91765 0.96326 1.09111 1.17172 0.90294 0.85273 1.07746 1.44022 1.03713 1.05170 1.85744 1.19881 0.81882 0.93957 0.93821 1.22489 1.00075 1.03139 0.97382 1.21835 1.01897 0.94944 0.96643 1.21883 0.96371 0.97118 0.91633 1.60357 1.61044 1.03585 1.07162 1.21821 0.98172 0.88372 0.98177 1.22309 1.00252 1.00720 0.94465 1.20495 0.97930 0.91759 1.08020 1.20789 0.94526 0.96165 1.08519 1.17421 0.91428 0.92172 0.92370 1.20286 1.03262 0.93995 1.38466 0.91107 1.26792 0.93189 1.04952 0.93080 1.70475 1.24654 1.31070 1.17639 0.83724 0.76646 0.74179 0.77022 1.20161 1.20304 1.20456 0.94058 0.94606 0.92001 0.89755 0.78700 0.90114 0.92977 0.92722 0.91476 0.90452 0.91304 0.95192 0.84619 0.91479 0.94341 0.91651 0.89344 0.87198 0.87806 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.39 36.01 0.34 -1.44 16 2 C -0.16 -3.94 5.90 -104.31 -0.62 -4.56 16 3 C -0.15 -3.25 9.47 -39.77 -0.38 -3.62 16 4 C 0.09 1.91 6.25 -83.68 -0.52 1.39 16 5 N -0.75 -12.54 4.34 -45.75 -0.20 -12.74 16 6 C 0.19 2.82 0.66 -131.70 -0.09 2.73 16 7 C -0.17 -2.60 8.18 37.16 0.30 -2.30 16 8 C -0.11 -1.39 4.96 -26.58 -0.13 -1.52 16 9 C 0.06 0.67 6.39 -3.76 -0.02 0.65 16 10 N -0.69 -8.27 6.85 -113.74 -0.78 -9.05 16 11 C 0.06 0.89 6.40 -3.83 -0.02 0.87 16 12 C -0.14 -2.09 4.63 -26.66 -0.12 -2.21 16 13 C -0.16 -3.56 6.82 -39.77 -0.27 -3.83 16 14 C -0.18 -4.56 7.90 -39.26 -0.31 -4.87 16 15 C 0.07 1.83 5.29 -106.79 -0.56 1.26 16 16 C -0.53 -14.21 8.04 -37.87 -0.30 -14.51 16 17 H 0.07 1.86 6.92 -52.49 -0.36 1.50 16 18 C 0.04 1.02 4.92 -17.34 -0.09 0.94 16 19 N -0.81 -22.07 12.32 55.54 0.68 -21.38 16 20 Si 1.06 22.28 30.00 -169.99 -5.10 17.18 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.06 1.36 6.77 -51.93 -0.35 1.01 16 27 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.38 5.92 7.31 -40.82 -0.30 5.62 16 29 H 0.08 1.39 4.65 -51.93 -0.24 1.15 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.36 6.91 -51.93 -0.36 0.00 16 36 H 0.34 3.44 8.90 -39.29 -0.35 3.09 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.61 7.69 -51.93 -0.40 0.22 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.54 4.81 -51.93 -0.25 1.29 16 41 H 0.11 2.22 3.25 -52.49 -0.17 2.05 16 42 H 0.10 2.75 6.52 -52.49 -0.34 2.41 16 43 H 0.30 8.23 6.74 -40.82 -0.27 7.95 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -27.32 321.77 -9.76 -37.09 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -6.42 Total: 15.08 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: -2.80 Total: -31.02 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.29 Total: -43.17 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.10 Total: 17.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.32 -9.76 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168186172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.584 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds