Wall clock time and date at job start Mon Mar 30 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36353 * 120.08268 * 2 1 4 4 C 1.39547 * 120.15936 * 179.97438 * 3 2 1 5 5 N 1.38866 * 119.84055 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99752 * 173.01200 * 5 4 3 7 7 C 1.52995 * 109.52385 * 305.50191 * 6 5 4 8 8 C 1.53115 * 109.51894 * 185.37319 * 6 5 4 9 9 C 1.53176 * 109.21080 * 297.69150 * 8 6 5 10 10 N 1.46849 * 109.55160 * 300.85861 * 9 8 6 11 11 C 1.46855 * 111.19758 * 61.74413 * 10 9 8 12 12 C 1.53032 * 109.52187 * 298.25687 * 11 10 9 13 13 C 1.39590 * 120.31714 * 359.95147 * 4 3 2 14 14 C 1.36319 * 120.16072 * 359.78401 * 13 4 3 15 15 C 1.40868 * 120.07991 * 179.97438 * 2 1 3 16 16 C 1.41142 * 120.15453 * 0.02562 * 15 2 1 17 17 H 1.07997 * 120.00135 * 334.34600 * 16 15 2 18 18 C 1.39864 * 119.99584 * 154.34759 * 16 15 2 19 19 N 1.30900 * 120.00223 * 334.48760 * 18 16 15 20 20 Si 1.86807 * 119.99639 * 154.49196 * 18 16 15 21 21 H 1.48505 * 109.46844 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47007 * 299.99573 * 20 18 16 23 23 H 1.48502 * 109.47181 * 59.99736 * 20 18 16 24 24 H 1.08992 * 109.47324 * 270.02780 * 1 2 3 25 25 H 1.09001 * 109.47129 * 30.02851 * 1 2 3 26 26 H 1.08999 * 109.47028 * 150.02526 * 1 2 3 27 27 H 1.07994 * 119.92119 * 359.96831 * 3 2 1 28 28 H 0.97002 * 119.99730 * 353.01356 * 5 4 3 29 29 H 1.08999 * 109.47366 * 65.07234 * 7 6 5 30 30 H 1.08997 * 109.46917 * 185.07153 * 7 6 5 31 31 H 1.08999 * 109.46990 * 305.06750 * 7 6 5 32 32 H 1.09001 * 109.50416 * 57.69428 * 8 6 5 33 33 H 1.09001 * 109.50317 * 177.81391 * 8 6 5 34 34 H 1.08998 * 109.44598 * 180.83626 * 9 8 6 35 35 H 1.08993 * 109.43851 * 60.88104 * 9 8 6 36 36 H 1.00903 * 110.99668 * 185.83459 * 10 9 8 37 37 H 1.09003 * 109.45937 * 178.23634 * 11 10 9 38 38 H 1.09001 * 109.44858 * 58.26544 * 11 10 9 39 39 H 1.09002 * 109.50160 * 299.23558 * 12 11 10 40 40 H 1.08997 * 109.50259 * 179.12275 * 12 11 10 41 41 H 1.07999 * 119.91932 * 180.02562 * 13 4 3 42 42 H 1.07998 * 120.08397 * 180.22747 * 14 13 4 43 43 H 0.96998 * 120.00346 * 353.85902 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3872 0.0000 6 6 5.7321 2.3980 0.1549 7 6 6.1168 1.6376 1.4256 8 6 6.2253 3.8441 0.2548 9 6 5.8903 4.5817 -1.0452 10 7 6.5344 3.9017 -2.1761 11 6 6.0410 2.5259 -2.3194 12 6 6.3806 1.7271 -1.0591 13 6 4.2922 -0.0223 0.0021 14 6 3.6221 -1.2094 0.0076 15 6 2.2131 -1.2190 0.0005 16 6 1.5124 -2.4442 0.0005 17 1 0.5123 -2.4943 0.4051 18 6 2.1133 -3.5934 -0.5234 19 7 3.0514 -3.4861 -1.4300 20 14 1.5770 -5.2813 0.0707 21 1 2.3611 -6.3266 -0.6349 22 1 1.8113 -5.3888 1.5332 23 1 0.1319 -5.4703 -0.2143 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6506 2.1152 -0.0005 28 1 3.7923 3.2221 -0.1029 29 1 5.8478 0.5870 1.3159 30 1 7.1911 1.7224 1.5885 31 1 5.5855 2.0616 2.2776 32 1 5.7343 4.3390 1.0927 33 1 7.3043 3.8507 0.4089 34 1 6.2530 5.6078 -0.9840 35 1 4.8102 4.5865 -1.1916 36 1 6.4071 4.4223 -3.0311 37 1 6.5133 2.0589 -3.1837 38 1 4.9602 2.5407 -2.4598 39 1 7.4621 1.7004 -0.9255 40 1 6.0007 0.7104 -1.1592 41 1 5.3722 -0.0134 0.0029 42 1 4.1697 -2.1402 0.0125 43 1 3.2680 -2.6175 -1.8034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168186172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:38 Heat of formation + Delta-G solvation = 6.254673 kcal Electronic energy + Delta-G solvation = -21959.628342 eV Core-core repulsion = 19003.144458 eV Total energy + Delta-G solvation = -2956.483884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14281 -39.34672 -36.51725 -35.12270 -33.20185 -32.57029 -31.74489 -29.69557 -28.46317 -27.67887 -26.06956 -24.03089 -22.98993 -22.58478 -21.74124 -19.76513 -19.54372 -17.88268 -17.37539 -16.50862 -16.29940 -15.73502 -15.60110 -15.46920 -14.95281 -14.83356 -14.45774 -14.36182 -14.17308 -13.70080 -13.39805 -13.24472 -13.02374 -12.93398 -12.83301 -12.79274 -12.67721 -12.41440 -12.29811 -12.10500 -11.96778 -11.51894 -11.40697 -11.29752 -10.82243 -10.67921 -10.28726 -9.41211 -9.35378 -8.98007 -8.20608 -6.02280 1.01383 1.14141 1.51962 1.69069 1.80190 2.41272 2.82060 2.82296 3.31322 3.66647 3.75025 3.89202 4.01930 4.25271 4.35167 4.38173 4.44659 4.52345 4.59130 4.65528 4.74212 4.75101 4.82274 4.87129 4.93993 4.95615 5.00919 5.06067 5.13353 5.20188 5.23123 5.27332 5.33237 5.41502 5.63239 5.68515 5.83714 5.97286 6.03741 6.06017 6.41547 6.47025 6.48508 6.79812 7.04783 7.16750 7.30114 8.24943 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.004915 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.289881 B = 5695.568041 C = 6072.387732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.172 4.172 3 C -0.162 4.162 4 C 0.120 3.880 5 N -0.738 5.738 6 C 0.188 3.812 7 C -0.171 4.171 8 C -0.108 4.108 9 C 0.058 3.942 10 N -0.687 5.687 11 C 0.069 3.931 12 C -0.138 4.138 13 C -0.168 4.168 14 C -0.195 4.195 15 C 0.030 3.970 16 C -0.562 4.562 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.840 5.840 20 Si 1.110 2.890 21 H -0.276 1.276 22 H -0.268 1.268 23 H -0.261 1.261 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.112 0.888 28 H 0.391 0.609 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.025 0.975 36 H 0.349 0.651 37 H 0.070 0.930 38 H 0.016 0.984 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 13.454 1.306 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.174 4.174 3 C -0.184 4.184 4 C 0.020 3.980 5 N -0.373 5.373 6 C 0.101 3.899 7 C -0.229 4.229 8 C -0.146 4.146 9 C -0.071 4.071 10 N -0.319 5.319 11 C -0.060 4.060 12 C -0.176 4.176 13 C -0.189 4.189 14 C -0.215 4.215 15 C 0.026 3.974 16 C -0.592 4.592 17 H 0.083 0.917 18 C -0.213 4.213 19 N -0.466 5.466 20 Si 0.929 3.071 21 H -0.201 1.201 22 H -0.193 1.193 23 H -0.185 1.185 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.225 0.775 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.168 0.832 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.706 11.612 1.511 13.494 hybrid contribution -1.455 1.691 -0.415 2.269 sum 5.251 13.303 1.096 14.344 Atomic orbital electron populations 1.20373 0.91878 1.00875 1.00463 1.19685 0.95862 0.92605 1.09251 1.20026 0.92398 0.96790 1.09180 1.17287 0.90335 0.86331 1.04012 1.44087 1.04831 1.04075 1.84315 1.20097 0.80289 0.96159 0.93372 1.22446 1.01741 1.01254 0.97455 1.21810 1.02562 0.92613 0.97651 1.21966 0.96160 0.98193 0.90785 1.60335 1.60682 1.02626 1.08217 1.21681 0.96795 0.89819 0.97743 1.22240 1.00877 0.99263 0.95267 1.20678 0.98985 0.91356 1.07912 1.20732 0.94556 0.96402 1.09796 1.17745 0.92085 0.93238 0.94282 1.20420 1.03506 0.95177 1.40138 0.91669 1.28122 0.92585 1.08364 0.92217 1.70593 1.26813 1.29740 1.19478 0.83092 0.77184 0.69961 0.76879 1.20053 1.19341 1.18525 0.92899 0.91990 0.93551 0.87009 0.77452 0.92892 0.90563 0.92800 0.90153 0.89351 0.88728 0.95692 0.83216 0.91162 0.96582 0.90445 0.92324 0.85480 0.90241 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.39 71.24 0.67 -2.65 16 2 C -0.17 -8.36 5.90 -19.66 -0.12 -8.48 16 3 C -0.16 -6.95 9.47 22.15 0.21 -6.74 16 4 C 0.12 4.88 6.25 38.67 0.24 5.13 16 5 N -0.74 -23.03 4.34 -298.65 -1.30 -24.32 16 6 C 0.19 5.04 0.66 3.68 0.00 5.04 16 7 C -0.17 -4.81 8.18 71.98 0.59 -4.22 16 8 C -0.11 -2.18 4.96 30.69 0.15 -2.03 16 9 C 0.06 1.09 6.39 86.37 0.55 1.64 16 10 N -0.69 -14.25 6.85 -513.75 -3.52 -17.77 16 11 C 0.07 1.82 6.40 86.32 0.55 2.38 16 12 C -0.14 -3.93 4.63 30.64 0.14 -3.79 16 13 C -0.17 -7.59 6.82 22.15 0.15 -7.44 16 14 C -0.19 -10.36 7.90 22.48 0.18 -10.19 16 15 C 0.03 1.62 5.29 -21.27 -0.11 1.51 16 16 C -0.56 -31.47 8.04 23.38 0.19 -31.29 16 17 H 0.07 3.57 6.92 -2.91 -0.02 3.55 16 18 C 0.00 0.00 4.92 85.23 0.42 0.42 16 19 N -0.84 -48.10 12.32 21.82 0.27 -47.83 16 20 Si 1.11 46.20 30.00 68.60 2.06 48.26 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 26 H 0.05 2.06 6.77 -2.39 -0.02 2.05 16 27 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.39 10.91 7.31 -92.71 -0.68 10.23 16 29 H 0.05 1.80 4.65 -2.39 -0.01 1.79 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.02 0.50 6.91 -2.39 -0.02 0.49 16 36 H 0.35 6.01 8.90 -89.69 -0.80 5.21 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.02 0.49 7.69 -2.39 -0.02 0.47 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.04 4.81 -2.39 -0.01 2.03 16 41 H 0.13 5.26 3.25 -2.91 -0.01 5.25 16 42 H 0.08 4.53 6.52 -2.91 -0.02 4.51 16 43 H 0.28 16.53 6.74 -92.71 -0.62 15.91 16 Total: -1.00 -61.88 321.77 1.03 -60.85 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.30 Total: 41.52 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 3.82 Total: -60.71 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.54 Total: -89.92 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.06 Total: 48.26 kcal Total: -61.88 1.03 -60.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168186172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.107 kcal (2) G-P(sol) polarization free energy of solvation -61.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds