Wall clock time and date at job start Mon Mar 30 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36360 * 120.07827 * 2 1 4 4 C 1.39542 * 120.15793 * 179.75042 * 3 2 1 5 5 N 1.38860 * 119.84416 * 180.25943 * 4 3 2 6 6 C 1.46497 * 120.00293 * 180.24656 * 5 4 3 7 7 C 1.53936 * 113.73208 * 253.75961 * 6 5 4 8 8 N 1.48184 * 86.10486 * 221.95694 * 7 6 5 9 9 C 1.46901 * 111.07260 * 137.52001 * 8 7 6 10 10 C 1.53007 * 109.46936 * 80.56792 * 9 8 7 11 11 C 1.53002 * 109.47321 * 200.56784 * 9 8 7 12 12 C 1.47959 * 90.79747 * 24.60347 * 8 7 6 13 13 C 1.39582 * 120.31687 * 0.49917 * 4 3 2 14 14 C 1.36320 * 120.16383 * 359.77946 * 13 4 3 15 15 C 1.40858 * 120.08360 * 180.27406 * 2 1 3 16 16 C 1.41144 * 120.15532 * 359.97438 * 15 2 1 17 17 H 1.07991 * 120.00032 * 333.66397 * 16 15 2 18 18 C 1.39870 * 119.99667 * 153.65987 * 16 15 2 19 19 N 1.30899 * 120.00510 * 343.82111 * 18 16 15 20 20 Si 1.86802 * 119.99443 * 163.82061 * 18 16 15 21 21 H 1.48502 * 109.47083 * 60.00261 * 20 18 16 22 22 H 1.48502 * 109.46925 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47337 * 299.99877 * 20 18 16 24 24 H 1.08992 * 109.47526 * 269.72378 * 1 2 3 25 25 H 1.09003 * 109.46951 * 149.72123 * 1 2 3 26 26 H 1.08997 * 109.47183 * 29.72972 * 1 2 3 27 27 H 1.08000 * 119.91929 * 359.97438 * 3 2 1 28 28 H 0.97008 * 119.99868 * 0.24170 * 5 4 3 29 29 H 1.09001 * 112.94122 * 25.32808 * 6 5 4 30 30 H 1.09001 * 113.75982 * 336.24282 * 7 6 5 31 31 H 1.09000 * 113.75912 * 107.60047 * 7 6 5 32 32 H 1.08999 * 109.47060 * 320.56906 * 9 8 7 33 33 H 1.08994 * 109.46825 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.47153 * 300.00192 * 10 9 8 35 35 H 1.09004 * 109.46718 * 60.00194 * 10 9 8 36 36 H 1.08993 * 109.46573 * 60.00052 * 11 9 8 37 37 H 1.08999 * 109.46929 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47153 * 300.00065 * 11 9 8 39 39 H 1.09000 * 113.76018 * 221.08709 * 12 8 7 40 40 H 1.08996 * 113.76213 * 89.71808 * 12 8 7 41 41 H 1.08011 * 119.91972 * 179.75363 * 13 4 3 42 42 H 1.07994 * 120.08692 * 179.97438 * 14 13 4 43 43 H 0.96996 * 120.00251 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1800 0.0000 4 6 3.5859 1.1819 0.0053 5 7 4.2752 2.3873 0.0107 6 6 5.7401 2.3935 0.0107 7 6 6.3580 2.7841 1.3655 8 7 7.3206 3.5911 0.5794 9 6 7.5455 4.9014 1.2043 10 6 8.5479 4.7542 2.3509 11 6 8.1013 5.8746 0.1628 12 6 6.3543 3.6947 -0.5363 13 6 4.2921 -0.0220 0.0000 14 6 3.6222 -1.2092 -0.0057 15 6 2.2131 -1.2188 -0.0058 16 6 1.5125 -2.4441 -0.0111 17 1 0.5170 -2.4987 0.4039 18 6 2.1076 -3.5875 -0.5541 19 7 3.1556 -3.4744 -1.3301 20 14 1.4065 -5.2763 -0.1717 21 1 -0.0004 -5.3463 -0.6419 22 1 2.2122 -6.3148 -0.8628 23 1 1.4508 -5.5103 1.2941 24 1 -0.3634 -0.0050 1.0275 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8924 -0.5096 27 1 1.6504 2.1153 -0.0004 28 1 3.7867 3.2254 0.0143 29 1 6.1688 1.4899 -0.4227 30 1 5.6963 3.3796 1.9945 31 1 6.8143 1.9491 1.8971 32 1 6.6023 5.2851 1.5933 33 1 8.7144 5.7263 2.8149 34 1 8.1519 4.0609 3.0929 35 1 9.4911 4.3705 1.9619 36 1 7.3872 5.9794 -0.6540 37 1 8.2677 6.8469 0.6264 38 1 9.0445 5.4909 -0.2262 39 1 6.8078 3.5859 -1.5215 40 1 5.6916 4.5571 -0.4647 41 1 5.3722 -0.0130 0.0001 42 1 4.1699 -2.1399 -0.0101 43 1 3.5685 -4.2674 -1.7062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168314458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:43 Heat of formation + Delta-G solvation = 33.011147 kcal Electronic energy + Delta-G solvation = -20777.733381 eV Core-core repulsion = 17822.409745 eV Total energy + Delta-G solvation = -2955.323636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25095 -39.65213 -36.60191 -35.13065 -33.99501 -32.54204 -30.42593 -28.64993 -28.17475 -26.86898 -26.39805 -25.70275 -22.84088 -22.11479 -20.89624 -20.35559 -18.98001 -17.79567 -17.28585 -16.89549 -16.56655 -15.69729 -15.64718 -15.30673 -15.03206 -14.37057 -14.34961 -14.25788 -13.77319 -13.65819 -13.47506 -13.34387 -13.03195 -12.89294 -12.85181 -12.77194 -12.72273 -12.66376 -12.27929 -12.11963 -12.00892 -11.66448 -11.45740 -11.35786 -11.05975 -10.98864 -10.18752 -9.81412 -9.16992 -8.49191 -8.11449 -5.95572 1.13016 1.22368 1.41326 1.51465 1.61381 2.29200 2.67889 2.88360 3.10347 3.64098 3.86124 3.89249 3.97493 4.06370 4.16945 4.40729 4.44254 4.50147 4.51449 4.67454 4.77872 4.78680 4.84024 4.90798 4.91490 4.97383 5.00906 5.07192 5.07497 5.13880 5.19286 5.33290 5.35244 5.37428 5.48473 5.53610 5.77936 5.95056 5.99730 6.11704 6.26429 6.46961 6.70737 6.91120 7.14622 7.18035 7.34514 8.53372 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031532 B = 0.003546 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.774560 B = 7893.522424 C = 8389.870500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.167 4.167 3 C -0.167 4.167 4 C 0.114 3.886 5 N -0.737 5.737 6 C 0.131 3.869 7 C -0.010 4.010 8 N -0.481 5.481 9 C 0.040 3.960 10 C -0.137 4.137 11 C -0.142 4.142 12 C 0.007 3.993 13 C -0.181 4.181 14 C -0.143 4.143 15 C 0.038 3.962 16 C -0.495 4.495 17 H 0.073 0.927 18 C 0.030 3.970 19 N -0.845 5.845 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.264 1.264 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.397 0.603 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 14.744 3.467 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.169 4.169 3 C -0.189 4.189 4 C 0.015 3.985 5 N -0.370 5.370 6 C 0.023 3.977 7 C -0.141 4.141 8 N -0.205 5.205 9 C -0.069 4.069 10 C -0.194 4.194 11 C -0.200 4.200 12 C -0.122 4.122 13 C -0.202 4.202 14 C -0.163 4.163 15 C 0.035 3.965 16 C -0.526 4.526 17 H 0.091 0.909 18 C -0.181 4.181 19 N -0.474 5.474 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.189 1.189 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.232 0.768 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.557 14.318 3.203 16.504 hybrid contribution -0.995 -0.476 0.229 1.127 sum 6.562 13.843 3.432 15.699 Atomic orbital electron populations 1.20400 0.91674 1.01075 1.00608 1.19758 0.95979 0.92633 1.08516 1.19972 0.91933 0.97042 1.09988 1.17435 0.90800 0.86105 1.04150 1.43897 1.03700 1.04328 1.85109 1.22617 0.80684 0.98747 0.95629 1.24563 0.93809 0.98367 0.97317 1.68563 1.32686 1.13349 1.05936 1.22263 0.98681 0.89946 0.96029 1.21714 0.98883 1.02058 0.96787 1.21826 1.01401 0.98495 0.98239 1.24266 0.93710 0.96764 0.97478 1.20234 0.97874 0.92020 1.10114 1.20852 0.94902 0.96249 1.04277 1.17693 0.92113 0.92875 0.93825 1.19541 1.02405 0.93935 1.36746 0.90921 1.26587 0.94765 1.04361 0.92402 1.69918 1.20724 1.32303 1.24412 0.85413 0.79113 0.76793 0.79289 1.18557 1.19870 1.18907 0.92687 0.93290 0.91937 0.86631 0.76802 0.89289 0.90838 0.90341 0.93543 0.90802 0.93550 0.92361 0.92523 0.90747 0.92296 0.88695 0.89847 0.88143 0.88752 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.30 9.40 71.24 0.67 -2.63 16 2 C -0.17 -8.03 5.90 -19.66 -0.12 -8.15 16 3 C -0.17 -7.16 9.46 22.15 0.21 -6.95 16 4 C 0.11 4.77 6.67 38.67 0.26 5.03 16 5 N -0.74 -23.45 5.52 -322.11 -1.78 -25.22 16 6 C 0.13 3.71 4.17 46.56 0.19 3.91 16 7 C -0.01 -0.25 7.42 86.37 0.64 0.39 16 8 N -0.48 -10.97 5.98 -882.25 -5.28 -16.25 16 9 C 0.04 0.73 2.33 44.92 0.10 0.84 16 10 C -0.14 -2.33 9.37 71.98 0.67 -1.66 16 11 C -0.14 -2.17 9.09 71.98 0.65 -1.51 16 12 C 0.01 0.16 6.48 86.41 0.56 0.72 16 13 C -0.18 -8.52 9.18 22.15 0.20 -8.32 16 14 C -0.14 -7.75 8.62 22.48 0.19 -7.55 16 15 C 0.04 2.07 5.56 -21.27 -0.12 1.95 16 16 C -0.49 -27.29 8.09 23.38 0.19 -27.10 16 17 H 0.07 3.85 6.89 -2.92 -0.02 3.83 16 18 C 0.03 1.59 5.15 85.23 0.44 2.03 16 19 N -0.84 -46.57 10.97 21.82 0.24 -46.33 16 20 Si 0.97 40.33 29.59 68.60 2.03 42.36 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 2.11 6.78 -2.39 -0.02 2.09 16 26 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 27 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.40 10.75 8.71 -92.70 -0.81 9.94 16 29 H 0.09 2.92 6.17 -2.39 -0.01 2.90 16 30 H 0.07 1.81 7.63 -2.39 -0.02 1.79 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 0.86 7.63 -2.39 -0.02 0.84 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.86 7.92 -2.39 -0.02 0.84 16 35 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 0.85 7.02 -2.39 -0.02 0.83 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 1.59 7.62 -2.39 -0.02 1.58 16 41 H 0.10 4.39 6.04 -2.91 -0.02 4.37 16 42 H 0.09 5.45 6.23 -2.91 -0.02 5.43 16 43 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 Total: -1.00 -60.42 340.34 0.16 -60.26 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.19 Total: 34.19 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 4.76 Total: -49.01 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -6.82 Total: -87.81 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -60.42 0.16 -60.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168314458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.275 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds