Wall clock time and date at job start Mon Mar 30 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31553 * 118.64553 * 2 1 4 4 C 1.33193 * 120.71321 * 180.02562 * 3 2 1 5 5 C 1.40725 * 118.55357 * 359.97438 * 4 3 2 6 6 C 1.46169 * 106.21232 * 180.02562 * 5 4 3 7 7 C 1.34302 * 106.80356 * 359.73495 * 6 5 4 8 8 N 1.36784 * 134.29997 * 180.02562 * 4 3 2 9 9 C 1.46499 * 124.98765 * 359.97438 * 8 4 3 10 10 C 1.40305 * 118.66231 * 0.02562 * 5 4 3 11 11 N 1.38323 * 120.83763 * 180.02562 * 10 5 4 12 12 C 1.46496 * 120.00257 * 179.97438 * 11 10 5 13 13 C 1.53001 * 109.47502 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47371 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47313 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00159 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00252 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47452 * 89.99880 * 19 17 15 21 21 H 1.48505 * 109.46982 * 209.99698 * 19 17 15 22 22 H 1.48501 * 109.47201 * 329.99365 * 19 17 15 23 23 N 1.32083 * 118.64127 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47383 * 89.99378 * 1 2 3 25 25 H 1.08998 * 109.47645 * 210.00134 * 1 2 3 26 26 H 1.09012 * 109.47055 * 329.99736 * 1 2 3 27 27 H 1.07993 * 126.59649 * 179.97438 * 6 5 4 28 28 H 1.08007 * 125.09392 * 180.24164 * 7 6 5 29 29 H 1.09002 * 109.47391 * 89.99562 * 9 8 4 30 30 H 1.09001 * 109.46813 * 329.99619 * 9 8 4 31 31 H 1.09004 * 109.47041 * 209.99746 * 9 8 4 32 32 H 0.97005 * 120.00317 * 0.02562 * 11 10 5 33 33 H 1.09001 * 109.47295 * 299.99829 * 12 11 10 34 34 H 1.09001 * 109.47370 * 59.99609 * 12 11 10 35 35 H 1.08996 * 109.47197 * 299.99954 * 13 12 11 36 36 H 1.09009 * 109.46996 * 60.00192 * 13 12 11 37 37 H 1.09001 * 109.47638 * 300.00105 * 14 13 12 38 38 H 1.09001 * 109.47158 * 59.99965 * 14 13 12 39 39 H 0.97002 * 120.00306 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1376 1.1545 0.0000 4 6 3.4686 1.2026 -0.0005 5 6 4.1854 -0.0084 -0.0005 6 6 5.6012 0.3553 -0.0005 7 6 5.6573 1.6971 -0.0064 8 7 4.3880 2.2154 -0.0002 9 6 4.0640 3.6440 0.0003 10 6 3.4688 -1.2147 -0.0005 11 7 4.1277 -2.4309 0.0000 12 6 3.3611 -3.6793 0.0006 13 6 4.3234 -4.8688 0.0005 14 6 3.5228 -6.1725 0.0017 15 6 4.4707 -7.3441 0.0022 16 1 5.5375 -7.1756 0.0022 17 6 3.9760 -8.6311 0.0028 18 7 2.6770 -8.8363 0.0034 19 14 5.1510 -10.0833 0.0042 20 1 5.4618 -10.4673 1.4045 21 1 4.5199 -11.2312 -0.6954 22 1 6.4052 -9.7059 -0.6957 23 7 2.1400 -1.1592 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5139 27 1 6.4405 -0.3243 -0.0001 28 1 6.5662 2.2806 -0.0117 29 1 3.9836 3.9980 1.0281 30 1 3.1156 3.8016 -0.5135 31 1 4.8515 4.1954 -0.5134 32 1 5.0973 -2.4572 0.0008 33 1 2.7331 -3.7197 0.8906 34 1 2.7330 -3.7204 -0.8893 35 1 4.9510 -4.8283 -0.8897 36 1 4.9518 -4.8279 0.8903 37 1 2.8954 -6.2129 0.8921 38 1 2.8942 -6.2137 -0.8878 39 1 2.3290 -9.7418 0.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:58 Heat of formation + Delta-G solvation = 72.854970 kcal Electronic energy + Delta-G solvation = -20006.319490 eV Core-core repulsion = 16949.183269 eV Total energy + Delta-G solvation = -3057.136221 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74930 -38.91544 -36.66756 -34.05736 -32.82405 -32.19989 -31.41948 -30.28457 -27.52870 -26.93689 -26.07117 -23.44573 -22.39134 -21.94007 -20.43891 -20.09022 -18.20313 -17.02952 -16.33016 -16.27953 -15.95776 -15.08277 -14.87726 -14.48033 -14.26309 -13.85773 -13.73057 -13.56848 -13.02975 -12.91978 -12.55022 -12.39305 -12.29415 -12.26234 -11.76061 -11.56590 -11.00791 -10.73703 -10.73174 -10.56973 -10.49264 -9.80799 -9.49328 -9.12064 -8.97796 -8.90469 -8.70412 -8.36031 -7.44459 -6.00797 -4.03681 1.15436 1.63894 2.42389 2.59751 3.31602 3.34668 3.38125 3.41397 4.10181 4.15640 4.39321 4.45759 4.61819 4.77251 4.96034 4.98363 5.11708 5.23136 5.35047 5.52464 5.60013 5.65087 5.71565 5.76719 5.83220 5.90436 6.18968 6.22057 6.37145 6.63888 6.70405 6.87512 6.93908 7.00048 7.19554 7.42793 7.65059 7.78106 7.85183 7.98313 8.39598 8.61301 9.02947 9.60417 11.10508 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003156 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.754757 B = 8869.712136 C = 9755.112415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.383 3.617 3 N -0.582 5.582 4 C 0.344 3.656 5 C -0.278 4.278 6 C -0.157 4.157 7 C 0.024 3.976 8 N -0.468 5.468 9 C 0.082 3.918 10 C 0.495 3.505 11 N -0.695 5.695 12 C 0.125 3.875 13 C -0.123 4.123 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.595 5.595 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.174 0.826 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 24.352 -0.091 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.112 3.888 3 N -0.310 5.310 4 C 0.107 3.893 5 C -0.292 4.292 6 C -0.184 4.184 7 C -0.099 4.099 8 N -0.155 5.155 9 C -0.059 4.059 10 C 0.245 3.755 11 N -0.324 5.324 12 C 0.002 3.998 13 C -0.161 4.161 14 C -0.012 4.012 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.325 5.325 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.166 0.834 28 H 0.191 0.809 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.534 24.419 -0.093 24.467 hybrid contribution 1.991 -0.795 0.006 2.144 sum 3.525 23.624 -0.087 23.886 Atomic orbital electron populations 1.20493 0.85888 1.03777 1.03575 1.22529 0.96952 0.81365 0.87978 1.67116 1.05938 1.30681 1.27283 1.18047 0.88338 0.86138 0.96777 1.19859 0.95660 0.93325 1.20338 1.21449 0.93977 0.94229 1.08718 1.21708 0.86338 0.94207 1.07632 1.43527 1.04087 1.05354 1.62562 1.21943 1.03101 0.77848 1.03055 1.18039 0.87943 0.84782 0.84778 1.44873 1.08905 1.02909 1.75708 1.21677 0.94788 0.81173 1.02146 1.21910 0.98230 0.95116 1.00814 1.19008 0.95211 0.89318 0.97662 1.21212 0.93012 0.90961 1.50868 0.92685 1.25023 0.95065 0.99060 0.95294 1.69964 1.11503 1.21209 1.50615 0.86589 0.81052 0.82230 0.78091 1.20666 1.21202 1.19903 1.67966 1.06883 1.29591 1.28035 0.89909 0.89508 0.90112 0.83381 0.80909 0.91324 0.89610 0.90032 0.75462 0.91634 0.91633 0.92798 0.92806 0.96249 0.96237 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.29 36.00 0.37 -0.51 16 2 C 0.38 5.91 7.63 -157.16 -1.20 4.71 16 3 N -0.58 -9.02 10.35 -10.04 -0.10 -9.12 16 4 C 0.34 5.13 7.95 -155.85 -1.24 3.90 16 5 C -0.28 -4.20 6.32 -105.00 -0.66 -4.86 16 6 C -0.16 -1.82 10.98 -37.79 -0.41 -2.23 16 7 C 0.02 0.23 11.30 -16.58 -0.19 0.05 16 8 N -0.47 -5.28 3.16 -123.64 -0.39 -5.67 16 9 C 0.08 0.60 11.07 59.85 0.66 1.26 16 10 C 0.50 8.19 7.55 -154.73 -1.17 7.03 16 11 N -0.69 -10.85 5.69 -60.14 -0.34 -11.19 16 12 C 0.12 2.23 5.74 -4.04 -0.02 2.20 16 13 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 14 C 0.03 0.65 4.97 -27.89 -0.14 0.51 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.59 -10.23 9.60 -9.83 -0.09 -10.33 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.41 5.48 8.40 -40.82 -0.34 5.14 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -33.85 334.82 -10.52 -44.37 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.80 Total: 0.43 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.55 Total: -3.96 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.19 Total: -62.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.85 -10.52 -44.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.229 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds