Wall clock time and date at job start Mon Mar 30 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31553 * 118.64553 * 2 1 4 4 C 1.33193 * 120.71321 * 180.02562 * 3 2 1 5 5 C 1.40725 * 118.55357 * 359.97438 * 4 3 2 6 6 C 1.46169 * 106.21232 * 180.02562 * 5 4 3 7 7 C 1.34302 * 106.80356 * 359.73495 * 6 5 4 8 8 N 1.36784 * 134.29997 * 180.02562 * 4 3 2 9 9 C 1.46499 * 124.98765 * 359.97438 * 8 4 3 10 10 C 1.40305 * 118.66231 * 0.02562 * 5 4 3 11 11 N 1.38323 * 120.83763 * 180.02562 * 10 5 4 12 12 C 1.46496 * 120.00257 * 179.97438 * 11 10 5 13 13 C 1.53001 * 109.47502 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47371 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47313 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00159 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00252 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47452 * 89.99880 * 19 17 15 21 21 H 1.48505 * 109.46982 * 209.99698 * 19 17 15 22 22 H 1.48501 * 109.47201 * 329.99365 * 19 17 15 23 23 N 1.32083 * 118.64127 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47383 * 89.99378 * 1 2 3 25 25 H 1.08998 * 109.47645 * 210.00134 * 1 2 3 26 26 H 1.09012 * 109.47055 * 329.99736 * 1 2 3 27 27 H 1.07993 * 126.59649 * 179.97438 * 6 5 4 28 28 H 1.08007 * 125.09392 * 180.24164 * 7 6 5 29 29 H 1.09002 * 109.47391 * 89.99562 * 9 8 4 30 30 H 1.09001 * 109.46813 * 329.99619 * 9 8 4 31 31 H 1.09004 * 109.47041 * 209.99746 * 9 8 4 32 32 H 0.97005 * 120.00317 * 0.02562 * 11 10 5 33 33 H 1.09001 * 109.47295 * 299.99829 * 12 11 10 34 34 H 1.09001 * 109.47370 * 59.99609 * 12 11 10 35 35 H 1.08996 * 109.47197 * 299.99954 * 13 12 11 36 36 H 1.09009 * 109.46996 * 60.00192 * 13 12 11 37 37 H 1.09001 * 109.47638 * 300.00105 * 14 13 12 38 38 H 1.09001 * 109.47158 * 59.99965 * 14 13 12 39 39 H 0.97002 * 120.00306 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1376 1.1545 0.0000 4 6 3.4686 1.2026 -0.0005 5 6 4.1854 -0.0084 -0.0005 6 6 5.6012 0.3553 -0.0005 7 6 5.6573 1.6971 -0.0064 8 7 4.3880 2.2154 -0.0002 9 6 4.0640 3.6440 0.0003 10 6 3.4688 -1.2147 -0.0005 11 7 4.1277 -2.4309 0.0000 12 6 3.3611 -3.6793 0.0006 13 6 4.3234 -4.8688 0.0005 14 6 3.5228 -6.1725 0.0017 15 6 4.4707 -7.3441 0.0022 16 1 5.5375 -7.1756 0.0022 17 6 3.9760 -8.6311 0.0028 18 7 2.6770 -8.8363 0.0034 19 14 5.1510 -10.0833 0.0042 20 1 5.4618 -10.4673 1.4045 21 1 4.5199 -11.2312 -0.6954 22 1 6.4052 -9.7059 -0.6957 23 7 2.1400 -1.1592 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5139 27 1 6.4405 -0.3243 -0.0001 28 1 6.5662 2.2806 -0.0117 29 1 3.9836 3.9980 1.0281 30 1 3.1156 3.8016 -0.5135 31 1 4.8515 4.1954 -0.5134 32 1 5.0973 -2.4572 0.0008 33 1 2.7331 -3.7197 0.8906 34 1 2.7330 -3.7204 -0.8893 35 1 4.9510 -4.8283 -0.8897 36 1 4.9518 -4.8279 0.8903 37 1 2.8954 -6.2129 0.8921 38 1 2.8942 -6.2137 -0.8878 39 1 2.3290 -9.7418 0.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:58 Heat of formation + Delta-G solvation = 53.099195 kcal Electronic energy + Delta-G solvation = -20007.176165 eV Core-core repulsion = 16949.183269 eV Total energy + Delta-G solvation = -3057.992896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.73733 -39.93918 -37.99672 -35.80076 -34.21617 -33.35047 -32.69464 -31.57642 -28.88819 -27.89810 -27.34113 -25.04143 -23.62919 -23.13505 -22.03298 -21.10428 -19.24078 -18.47803 -18.09926 -17.27192 -16.95612 -16.50882 -16.26478 -16.24346 -15.32115 -14.97613 -14.84056 -14.33880 -14.26684 -14.13150 -13.87370 -13.68147 -13.50854 -13.18549 -13.13234 -12.89187 -12.60540 -12.54693 -12.35440 -12.07336 -11.62426 -11.55762 -11.48807 -11.19247 -10.54769 -10.10290 -10.09581 -9.67104 -8.49971 -8.19008 -6.30409 0.09215 0.50921 1.41712 1.43131 1.54071 1.58932 1.73498 2.13742 2.42815 2.97168 3.14601 3.20253 3.43533 3.79262 3.90541 4.12081 4.18900 4.24347 4.34816 4.45507 4.57597 4.62203 4.72784 4.77412 4.79067 4.82093 4.97160 4.98011 5.09745 5.16658 5.30821 5.45224 5.51452 5.71705 5.84444 5.86883 5.94842 6.15603 6.24613 6.29981 6.74664 6.86679 7.38945 7.47566 8.93123 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003156 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.754757 B = 8869.712136 C = 9755.112415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.359 3.641 3 N -0.586 5.586 4 C 0.311 3.689 5 C -0.292 4.292 6 C -0.182 4.182 7 C 0.050 3.950 8 N -0.466 5.466 9 C 0.076 3.924 10 C 0.473 3.527 11 N -0.691 5.691 12 C 0.146 3.854 13 C -0.103 4.103 14 C 0.027 3.973 15 C -0.542 4.542 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.261 1.261 23 N -0.623 5.623 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.169 0.831 28 H 0.224 0.776 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.420 0.580 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.064 0.936 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 26.110 -0.125 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 N -0.313 5.313 4 C 0.073 3.927 5 C -0.306 4.306 6 C -0.207 4.207 7 C -0.073 4.073 8 N -0.153 5.153 9 C -0.064 4.064 10 C 0.224 3.776 11 N -0.323 5.323 12 C 0.022 3.978 13 C -0.141 4.141 14 C -0.010 4.010 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.185 1.185 23 N -0.354 5.354 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.187 0.813 28 H 0.240 0.760 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.258 0.742 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.109 26.241 -0.125 26.561 hybrid contribution 1.208 -1.175 0.018 1.685 sum 5.317 25.067 -0.108 25.625 Atomic orbital electron populations 1.20565 0.83647 1.04464 1.04495 1.23190 0.98444 0.81116 0.88422 1.67164 1.06632 1.30531 1.26974 1.18476 0.88595 0.87594 0.98047 1.20200 0.97721 0.92728 1.19957 1.21800 0.92812 0.95703 1.10424 1.22549 0.87013 0.94020 1.03751 1.43945 1.03928 1.06286 1.61103 1.22233 1.04125 0.75820 1.04235 1.18279 0.88224 0.85405 0.85719 1.44546 1.09133 1.01889 1.76715 1.21193 0.94083 0.81766 1.00785 1.21609 0.97795 0.92973 1.01745 1.18899 0.94968 0.92018 0.95146 1.21680 0.93812 0.91985 1.50552 0.91747 1.26008 0.96822 1.02419 0.94757 1.70107 1.13653 1.22039 1.51630 0.85425 0.78920 0.78097 0.78466 1.19805 1.20917 1.18528 1.67959 1.07710 1.30801 1.28890 0.88770 0.89601 0.88535 0.81319 0.75974 0.90215 0.90542 0.86387 0.74208 0.93095 0.93093 0.91754 0.91751 0.98838 0.98820 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 10.29 71.23 0.73 -0.94 16 2 C 0.36 11.38 7.63 138.73 1.06 12.44 16 3 N -0.59 -18.20 10.35 -185.69 -1.92 -20.12 16 4 C 0.31 9.05 7.95 133.96 1.06 10.11 16 5 C -0.29 -8.68 6.32 -20.11 -0.13 -8.81 16 6 C -0.18 -3.78 10.98 23.43 0.26 -3.52 16 7 C 0.05 0.77 11.30 82.97 0.94 1.71 16 8 N -0.47 -9.31 3.16 -545.09 -1.72 -11.03 16 9 C 0.08 0.86 11.07 127.77 1.41 2.28 16 10 C 0.47 15.99 7.55 133.40 1.01 17.00 16 11 N -0.69 -21.85 5.69 -344.18 -1.96 -23.81 16 12 C 0.15 5.38 5.74 86.38 0.50 5.87 16 13 C -0.10 -4.14 5.27 30.59 0.16 -3.98 16 14 C 0.03 1.45 4.97 29.85 0.15 1.59 16 15 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 19 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 N -0.62 -22.28 9.60 -185.02 -1.78 -24.05 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.12 0.50 8.13 -2.38 -0.02 0.48 16 32 H 0.42 11.03 8.40 -92.70 -0.78 10.25 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -75.63 334.82 3.05 -72.58 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.27 Total: 13.71 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 7.84 Total: 3.62 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -7.09 Total: -136.10 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.63 3.05 -72.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.678 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds