Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34623 * 125.06103 * 2 1 4 4 C 1.45921 * 107.04138 * 179.71621 * 3 2 1 5 5 N 1.33572 * 134.88037 * 180.23859 * 4 3 2 6 6 C 1.31481 * 120.43265 * 179.97438 * 5 4 3 7 7 C 1.50695 * 118.81784 * 180.02562 * 6 5 4 8 8 N 1.32131 * 122.36118 * 0.03609 * 6 5 4 9 9 C 1.32935 * 121.34973 * 359.97438 * 8 6 5 10 10 N 1.38555 * 120.70366 * 179.97438 * 9 8 6 11 11 C 1.46500 * 120.00231 * 0.02562 * 10 9 8 12 12 C 1.52998 * 109.47538 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47457 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47313 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00157 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99824 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00363 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99755 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47090 * 59.99766 * 18 16 14 20 20 H 1.48505 * 109.46969 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47060 * 299.99805 * 18 16 14 22 22 C 1.39932 * 118.59172 * 359.97438 * 9 8 6 23 23 N 1.36407 * 125.06563 * 180.17414 * 2 1 3 24 24 H 0.97001 * 125.09638 * 0.07079 * 23 2 1 25 25 H 1.09001 * 109.47202 * 90.02063 * 1 2 3 26 26 H 1.08996 * 109.47263 * 210.01678 * 1 2 3 27 27 H 1.09003 * 109.47359 * 330.02455 * 1 2 3 28 28 H 1.08002 * 126.48284 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47212 * 269.99444 * 7 6 5 30 30 H 1.08995 * 109.47309 * 29.99522 * 7 6 5 31 31 H 1.09006 * 109.46907 * 149.99939 * 7 6 5 32 32 H 0.97007 * 119.99992 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.47178 * 300.00603 * 11 10 9 34 34 H 1.09008 * 109.46947 * 60.00052 * 11 10 9 35 35 H 1.09004 * 109.47028 * 300.00266 * 12 11 10 36 36 H 1.08994 * 109.47290 * 59.99993 * 12 11 10 37 37 H 1.09004 * 109.47046 * 300.00043 * 13 12 11 38 38 H 1.09008 * 109.47161 * 59.99542 * 13 12 11 39 39 H 0.96998 * 120.00162 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2803 1.1019 0.0000 4 6 3.6679 0.6506 0.0069 5 7 4.8570 1.2590 0.0139 6 6 5.9662 0.5532 0.0196 7 6 7.2878 1.2773 0.0280 8 7 5.9638 -0.7681 0.0179 9 6 4.8273 -1.4576 0.0109 10 7 4.8404 -2.8431 0.0087 11 6 6.1159 -3.5636 0.0147 12 6 5.8506 -5.0704 0.0101 13 6 7.1827 -5.8229 0.0171 14 6 6.9214 -7.3070 0.0132 15 1 5.9066 -7.6766 0.0068 16 6 7.9778 -8.1930 0.0177 17 7 9.2134 -7.7430 0.0249 18 14 7.6538 -10.0328 0.0121 19 1 6.8857 -10.3964 -1.2056 20 1 8.9468 -10.7631 0.0177 21 1 6.8713 -10.4012 1.2193 22 6 3.6175 -0.7545 0.0057 23 7 2.2906 -1.1165 -0.0034 24 1 1.9614 -2.0289 -0.0071 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5135 28 1 1.9384 2.1264 -0.0004 29 1 7.6125 1.4529 -0.9976 30 1 7.1759 2.2318 0.5422 31 1 8.0311 0.6707 0.5455 32 1 4.0049 -3.3360 0.0032 33 1 6.6901 -3.2934 -0.8716 34 1 6.6799 -3.2964 0.9084 35 1 5.2763 -5.3409 0.8962 36 1 5.2868 -5.3374 -0.8837 37 1 7.7574 -5.5525 -0.8688 38 1 7.7462 -5.5559 0.9112 39 1 9.9566 -8.3664 0.0277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = 58.789992 kcal Electronic energy + Delta-G solvation = -19956.846371 eV Core-core repulsion = 16899.100246 eV Total energy + Delta-G solvation = -3057.746125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84733 -38.93028 -36.79214 -34.04541 -32.53559 -32.35155 -31.24498 -30.45666 -28.74066 -27.30029 -25.87775 -23.22966 -22.36783 -21.84566 -20.53063 -20.38765 -18.35685 -17.04976 -16.72790 -16.34990 -15.74033 -15.14151 -14.72876 -14.54570 -14.20564 -14.15488 -13.77098 -13.31542 -13.08687 -12.88145 -12.48051 -12.38776 -12.31935 -12.12388 -11.82133 -11.73418 -11.11567 -10.96885 -10.81766 -10.72442 -10.63492 -9.88466 -9.54556 -9.18354 -9.15302 -8.87355 -8.53850 -8.40284 -7.50545 -6.04925 -4.08378 1.13344 1.39544 2.52394 2.77671 3.17181 3.29197 3.34248 3.36062 4.02073 4.09190 4.34864 4.42103 4.63028 4.78219 4.82511 5.00883 5.11792 5.30732 5.42678 5.45424 5.56291 5.67102 5.70389 5.75474 5.77105 5.97945 6.12653 6.21708 6.46737 6.55247 6.55967 6.75967 6.88743 7.04490 7.19424 7.31092 7.59391 7.72292 7.75060 7.93430 8.34349 8.59431 8.97867 9.55869 11.06285 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.003328 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.298350 B = 8412.220048 C = 9601.160838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.106 3.894 3 C -0.204 4.204 4 C 0.155 3.845 5 N -0.538 5.538 6 C 0.342 3.658 7 C -0.077 4.077 8 N -0.568 5.568 9 C 0.468 3.532 10 N -0.708 5.708 11 C 0.128 3.872 12 C -0.122 4.122 13 C 0.026 3.974 14 C -0.525 4.525 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.079 4.079 23 N -0.568 5.568 24 H 0.414 0.586 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 16.799 -0.038 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.009 4.009 3 C -0.231 4.231 4 C 0.019 3.981 5 N -0.259 5.259 6 C 0.071 3.929 7 C -0.136 4.136 8 N -0.296 5.296 9 C 0.215 3.785 10 N -0.340 5.340 11 C 0.005 3.995 12 C -0.160 4.160 13 C -0.011 4.011 14 C -0.563 4.563 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.193 4.193 23 N -0.173 5.173 24 H 0.251 0.749 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.171 0.829 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.237 0.763 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.306 17.075 -0.033 22.276 hybrid contribution -1.342 -2.279 -0.032 2.645 sum -15.648 14.795 -0.065 21.536 Atomic orbital electron populations 1.20511 0.87065 1.04050 1.03503 1.20442 0.93639 0.85569 1.01220 1.21102 0.88096 0.98163 1.15775 1.19900 0.92925 0.87639 0.97599 1.67733 0.96507 1.40072 1.21551 1.22672 0.94202 0.85151 0.90853 1.20451 0.90204 0.99475 1.03462 1.67884 1.26021 1.09698 1.26044 1.17791 0.85985 0.85741 0.88980 1.44864 1.10350 1.01044 1.77784 1.21653 0.83404 0.92202 1.02209 1.21910 1.02268 0.91217 1.00644 1.19001 0.90237 0.94186 0.97709 1.21157 0.92574 0.91337 1.51260 0.92789 1.25020 0.95141 0.98994 0.95214 1.69946 0.98135 1.34770 1.50323 0.86646 0.77443 0.85252 0.78575 1.20256 1.21201 1.20250 1.19215 0.85057 0.97248 1.17802 1.41280 1.03466 1.08219 1.64293 0.74898 0.90071 0.91045 0.89316 0.82934 0.90097 0.90044 0.89814 0.76277 0.91606 0.91602 0.92919 0.92915 0.96210 0.96215 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.39 36.00 0.37 -0.09 16 2 C 0.11 0.98 7.08 -81.84 -0.58 0.40 16 3 C -0.20 -2.38 10.94 -37.79 -0.41 -2.79 16 4 C 0.15 2.36 7.57 -83.15 -0.63 1.73 16 5 N -0.54 -8.76 10.39 -7.66 -0.08 -8.84 16 6 C 0.34 5.42 7.64 -157.17 -1.20 4.22 16 7 C -0.08 -0.91 10.30 36.00 0.37 -0.54 16 8 N -0.57 -9.72 9.58 -9.89 -0.09 -9.81 16 9 C 0.47 7.46 7.54 -154.70 -1.17 6.29 16 10 N -0.71 -10.48 5.70 -60.19 -0.34 -10.82 16 11 C 0.13 2.22 5.74 -4.04 -0.02 2.20 16 12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.52 16 13 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 C -0.08 -1.14 7.21 -83.78 -0.60 -1.74 16 23 N -0.57 -5.88 6.05 -6.82 -0.04 -5.92 16 24 H 0.41 3.10 8.96 -40.82 -0.37 2.73 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.40 4.89 8.49 -40.82 -0.35 4.55 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -33.69 334.35 -10.12 -43.81 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.75 Total: 1.77 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -4.56 Total: -5.67 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.18 Total: -61.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.69 -10.12 -43.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.600 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds