Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34623 * 125.06103 * 2 1 4 4 C 1.45921 * 107.04138 * 179.71621 * 3 2 1 5 5 N 1.33572 * 134.88037 * 180.23859 * 4 3 2 6 6 C 1.31481 * 120.43265 * 179.97438 * 5 4 3 7 7 C 1.50695 * 118.81784 * 180.02562 * 6 5 4 8 8 N 1.32131 * 122.36118 * 0.03609 * 6 5 4 9 9 C 1.32935 * 121.34973 * 359.97438 * 8 6 5 10 10 N 1.38555 * 120.70366 * 179.97438 * 9 8 6 11 11 C 1.46500 * 120.00231 * 0.02562 * 10 9 8 12 12 C 1.52998 * 109.47538 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47457 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47313 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00157 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99824 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00363 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99755 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47090 * 59.99766 * 18 16 14 20 20 H 1.48505 * 109.46969 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47060 * 299.99805 * 18 16 14 22 22 C 1.39932 * 118.59172 * 359.97438 * 9 8 6 23 23 N 1.36407 * 125.06563 * 180.17414 * 2 1 3 24 24 H 0.97001 * 125.09638 * 0.07079 * 23 2 1 25 25 H 1.09001 * 109.47202 * 90.02063 * 1 2 3 26 26 H 1.08996 * 109.47263 * 210.01678 * 1 2 3 27 27 H 1.09003 * 109.47359 * 330.02455 * 1 2 3 28 28 H 1.08002 * 126.48284 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47212 * 269.99444 * 7 6 5 30 30 H 1.08995 * 109.47309 * 29.99522 * 7 6 5 31 31 H 1.09006 * 109.46907 * 149.99939 * 7 6 5 32 32 H 0.97007 * 119.99992 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.47178 * 300.00603 * 11 10 9 34 34 H 1.09008 * 109.46947 * 60.00052 * 11 10 9 35 35 H 1.09004 * 109.47028 * 300.00266 * 12 11 10 36 36 H 1.08994 * 109.47290 * 59.99993 * 12 11 10 37 37 H 1.09004 * 109.47046 * 300.00043 * 13 12 11 38 38 H 1.09008 * 109.47161 * 59.99542 * 13 12 11 39 39 H 0.96998 * 120.00162 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2803 1.1019 0.0000 4 6 3.6679 0.6506 0.0069 5 7 4.8570 1.2590 0.0139 6 6 5.9662 0.5532 0.0196 7 6 7.2878 1.2773 0.0280 8 7 5.9638 -0.7681 0.0179 9 6 4.8273 -1.4576 0.0109 10 7 4.8404 -2.8431 0.0087 11 6 6.1159 -3.5636 0.0147 12 6 5.8506 -5.0704 0.0101 13 6 7.1827 -5.8229 0.0171 14 6 6.9214 -7.3070 0.0132 15 1 5.9066 -7.6766 0.0068 16 6 7.9778 -8.1930 0.0177 17 7 9.2134 -7.7430 0.0249 18 14 7.6538 -10.0328 0.0121 19 1 6.8857 -10.3964 -1.2056 20 1 8.9468 -10.7631 0.0177 21 1 6.8713 -10.4012 1.2193 22 6 3.6175 -0.7545 0.0057 23 7 2.2906 -1.1165 -0.0034 24 1 1.9614 -2.0289 -0.0071 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5135 28 1 1.9384 2.1264 -0.0004 29 1 7.6125 1.4529 -0.9976 30 1 7.1759 2.2318 0.5422 31 1 8.0311 0.6707 0.5455 32 1 4.0049 -3.3360 0.0032 33 1 6.6901 -3.2934 -0.8716 34 1 6.6799 -3.2964 0.9084 35 1 5.2763 -5.3409 0.8962 36 1 5.2868 -5.3374 -0.8837 37 1 7.7574 -5.5525 -0.8688 38 1 7.7462 -5.5559 0.9112 39 1 9.9566 -8.3664 0.0277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = 37.089100 kcal Electronic energy + Delta-G solvation = -19957.787392 eV Core-core repulsion = 16899.100246 eV Total energy + Delta-G solvation = -3058.687146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.85035 -39.95277 -38.11493 -35.82179 -34.10789 -33.37481 -32.29055 -31.77713 -29.58906 -28.79153 -27.18099 -24.89589 -23.50742 -23.00446 -22.14789 -21.32689 -19.40955 -18.51419 -18.18009 -17.71651 -16.87563 -16.53387 -16.26570 -16.12969 -15.28410 -15.06699 -14.80255 -14.31113 -14.16941 -14.05736 -13.71991 -13.61484 -13.55936 -13.17414 -12.89401 -12.85563 -12.67888 -12.58817 -12.42244 -12.30864 -12.02920 -11.61930 -11.51957 -11.23447 -10.56477 -10.32029 -10.06990 -9.42026 -8.62323 -8.20978 -6.32834 0.08030 0.28554 1.40157 1.43037 1.51000 1.61501 1.91487 1.97851 2.40665 2.95219 3.09961 3.12603 3.27558 3.72016 3.87905 4.00443 4.15279 4.20070 4.43885 4.51236 4.55125 4.66983 4.79464 4.80888 4.82276 4.93207 5.02621 5.08942 5.12612 5.15115 5.35860 5.47651 5.56261 5.67813 5.68307 5.81140 5.83131 6.12982 6.21469 6.45327 6.64411 6.84153 7.36738 7.44958 8.90875 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.003328 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.298350 B = 8412.220048 C = 9601.160838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.229 4.229 4 C 0.123 3.877 5 N -0.554 5.554 6 C 0.322 3.678 7 C -0.073 4.073 8 N -0.597 5.597 9 C 0.453 3.547 10 N -0.700 5.700 11 C 0.147 3.853 12 C -0.103 4.103 13 C 0.027 3.973 14 C -0.545 4.545 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.089 4.089 23 N -0.557 5.557 24 H 0.429 0.571 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.169 0.831 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.416 0.584 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.064 0.936 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 16.336 -0.069 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.017 3.983 3 C -0.255 4.255 4 C -0.013 4.013 5 N -0.274 5.274 6 C 0.051 3.949 7 C -0.132 4.132 8 N -0.326 5.326 9 C 0.201 3.799 10 N -0.335 5.335 11 C 0.024 3.976 12 C -0.141 4.141 13 C -0.010 4.010 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.203 4.203 23 N -0.163 5.163 24 H 0.269 0.731 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.187 0.813 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.479 16.613 -0.064 24.115 hybrid contribution -0.463 -2.053 -0.025 2.105 sum -17.943 14.560 -0.089 23.107 Atomic orbital electron populations 1.20720 0.83255 1.05796 1.05073 1.21163 0.95529 0.84261 0.97337 1.21441 0.86665 0.99918 1.17512 1.20589 0.93984 0.88589 0.98113 1.67773 0.97160 1.40520 1.21996 1.23297 0.95459 0.85117 0.90984 1.20527 0.88606 0.99669 1.04349 1.67884 1.27108 1.10524 1.27128 1.17941 0.86677 0.85821 0.89491 1.44526 1.09815 1.00792 1.78342 1.21178 0.84427 0.91169 1.00869 1.21605 0.99128 0.91634 1.01711 1.18895 0.92658 0.94331 0.95152 1.21646 0.93167 0.92629 1.50826 0.91706 1.26008 0.94833 1.04410 0.94704 1.70095 0.99212 1.36609 1.51433 0.85484 0.77459 0.78765 0.79236 1.19064 1.21062 1.19048 1.19106 0.86135 0.96887 1.18200 1.41370 1.02094 1.09539 1.63260 0.73110 0.88360 0.89236 0.87649 0.81314 0.88997 0.88697 0.89741 0.74661 0.93074 0.93060 0.91730 0.91729 0.98852 0.98853 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.39 71.23 0.74 0.24 16 2 C 0.13 2.07 7.08 41.02 0.29 2.36 16 3 C -0.23 -4.96 10.94 23.43 0.26 -4.71 16 4 C 0.12 3.71 7.57 41.44 0.31 4.02 16 5 N -0.55 -18.32 10.39 -178.14 -1.85 -20.17 16 6 C 0.32 10.50 7.64 138.74 1.06 11.56 16 7 C -0.07 -1.77 10.30 71.23 0.73 -1.03 16 8 N -0.60 -21.10 9.58 -185.19 -1.77 -22.87 16 9 C 0.45 14.53 7.54 133.25 1.00 15.53 16 10 N -0.70 -20.49 5.70 -344.34 -1.96 -22.45 16 11 C 0.15 5.23 5.74 86.38 0.50 5.72 16 12 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 13 C 0.03 1.42 4.97 29.85 0.15 1.57 16 14 C -0.54 -30.37 9.11 25.60 0.23 -30.13 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 17 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 18 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C -0.09 -2.49 7.21 39.23 0.28 -2.21 16 23 N -0.56 -10.27 6.05 -175.50 -1.06 -11.33 16 24 H 0.43 5.18 8.96 -92.71 -0.83 4.35 16 25 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.42 9.52 8.49 -92.70 -0.79 8.74 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.90 334.35 1.30 -73.60 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.55 Total: 14.69 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 6.18 Total: -0.50 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -6.36 Total: -133.38 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.90 1.30 -73.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.689 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds