Wall clock time and date at job start Mon Mar 30 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47294 * 179.97438 * 11 10 9 13 13 C 1.39673 * 120.00543 * 179.97438 * 12 11 10 14 14 C 1.38916 * 120.07008 * 359.72387 * 13 12 11 15 15 C 1.38101 * 119.92312 * 179.76580 * 14 13 12 16 16 C 1.38293 * 120.07353 * 0.51273 * 15 14 13 17 17 C 1.50697 * 119.92250 * 179.76571 * 16 15 14 18 18 H 1.09003 * 109.87985 * 200.67492 * 17 16 15 19 19 C 1.54328 * 109.89085 * 79.64753 * 17 16 15 20 20 C 1.55392 * 102.89950 * 218.40506 * 19 17 16 21 21 C 1.54913 * 101.74296 * 35.47928 * 20 19 17 22 22 N 1.47439 * 109.89038 * 321.70862 * 17 16 15 23 23 C 1.38283 * 120.14917 * 359.74017 * 16 15 14 24 24 C 1.38106 * 120.07599 * 0.02562 * 23 16 15 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 31 31 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 32 32 H 0.97006 * 119.99755 * 359.97438 * 12 11 10 33 33 H 1.07996 * 120.03666 * 0.02562 * 14 13 12 34 34 H 1.08001 * 119.96569 * 180.25546 * 15 14 13 35 35 H 1.09004 * 110.70076 * 336.69248 * 19 17 16 36 36 H 1.08999 * 110.70287 * 99.92451 * 19 17 16 37 37 H 1.08999 * 110.87353 * 277.38946 * 20 19 17 38 38 H 1.09000 * 111.02333 * 153.62950 * 20 19 17 39 39 H 1.08996 * 110.37255 * 204.19341 * 21 20 19 40 40 H 1.09002 * 110.37451 * 81.84700 * 21 20 19 41 41 H 1.00891 * 110.99905 * 356.14857 * 22 17 16 42 42 H 1.08004 * 119.96184 * 179.97438 * 23 16 15 43 43 H 1.07998 * 120.03608 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9670 -7.4175 0.0015 14 6 0.6016 -7.6731 0.0089 15 6 0.1447 -8.9763 0.0049 16 6 1.0448 -10.0263 0.0044 17 6 0.5424 -11.4470 0.0054 18 1 1.3235 -12.1161 0.3667 19 6 0.1201 -11.8557 -1.4216 20 6 -1.1506 -12.7153 -1.1745 21 6 -1.7929 -11.9885 0.0334 22 7 -0.6498 -11.5569 0.8658 23 6 2.4046 -9.7753 0.0024 24 6 2.8683 -8.4744 0.0014 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 0.8542 -5.0446 0.8914 31 1 0.8534 -5.0451 -0.8886 32 1 3.3862 -5.9233 -0.0005 33 1 -0.1018 -6.8536 0.0134 34 1 -0.9167 -9.1759 0.0064 35 1 -0.1202 -10.9762 -2.0190 36 1 0.9010 -12.4464 -1.9003 37 1 -0.8823 -13.7397 -0.9163 38 1 -1.8122 -12.6930 -2.0405 39 1 -2.4320 -12.6725 0.5917 40 1 -2.3644 -11.1239 -0.3041 41 1 -0.8470 -10.6800 1.3241 42 1 3.1049 -10.5975 0.0024 43 1 3.9305 -8.2791 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:12 Heat of formation + Delta-G solvation = 2.452467 kcal Electronic energy + Delta-G solvation = -19995.759169 eV Core-core repulsion = 17039.110410 eV Total energy + Delta-G solvation = -2956.648760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07097 -38.30880 -36.00238 -33.92382 -31.87572 -31.02715 -30.35657 -30.03160 -27.37751 -25.62975 -23.46309 -22.85924 -21.56255 -21.33893 -20.61418 -20.25997 -17.56582 -16.85223 -16.57314 -16.10500 -15.36084 -14.99401 -14.95276 -14.06278 -13.80725 -13.75084 -13.52660 -13.38189 -13.20384 -12.93169 -12.69108 -12.56028 -12.05277 -11.92613 -11.66853 -11.45598 -11.20487 -11.05307 -10.90902 -10.83422 -10.76006 -10.18778 -10.17712 -9.90736 -9.74545 -8.93183 -8.68295 -8.62509 -8.38271 -7.24127 -6.41661 -4.11439 1.43640 1.57655 3.40662 3.42449 3.60240 3.61943 3.78940 4.15464 4.43566 4.49764 4.50759 4.69163 4.84115 4.90112 5.02402 5.20664 5.25464 5.35550 5.38301 5.42615 5.53286 5.55953 5.57848 5.61240 5.66178 5.75355 5.81406 5.93481 5.98833 6.03726 6.31529 6.39474 6.40707 6.47746 6.58741 6.71835 6.77116 6.89469 7.15159 7.28807 7.42047 7.45544 7.85859 8.13931 8.39847 8.82417 9.60962 10.99092 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.002531 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.927384 B =11058.994844 C =11528.962243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.604 4.604 8 H 0.049 0.951 9 C 0.011 3.989 10 C -0.113 4.113 11 C 0.120 3.880 12 N -0.743 5.743 13 C 0.224 3.776 14 C -0.195 4.195 15 C -0.070 4.070 16 C -0.172 4.172 17 C 0.128 3.872 18 H 0.085 0.915 19 C -0.135 4.135 20 C -0.130 4.130 21 C 0.042 3.958 22 N -0.681 5.681 23 C -0.060 4.060 24 C -0.200 4.200 25 H 0.269 0.731 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.398 0.602 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.344 0.656 42 H 0.118 0.882 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -24.442 -1.449 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.067 0.933 9 C -0.026 4.026 10 C -0.151 4.151 11 C -0.003 4.003 12 N -0.370 5.370 13 C 0.119 3.881 14 C -0.218 4.218 15 C -0.089 4.089 16 C -0.175 4.175 17 C 0.018 3.982 18 H 0.103 0.897 19 C -0.173 4.173 20 C -0.168 4.168 21 C -0.087 4.087 22 N -0.311 5.311 23 C -0.079 4.079 24 C -0.223 4.223 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.162 0.838 42 H 0.136 0.864 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.529 -23.260 -1.176 23.296 hybrid contribution 0.399 -0.677 -0.514 0.939 sum 0.928 -23.937 -1.690 24.015 Atomic orbital electron populations 1.70790 1.06888 1.30606 1.46497 1.25878 0.96554 1.02815 0.93699 0.83537 0.74898 0.75293 0.76530 1.20698 1.21427 1.21411 1.22018 0.94274 0.91940 1.55987 0.93308 1.19152 0.94483 0.92778 0.96198 1.21710 0.99483 0.92771 1.01150 1.21607 0.92246 0.85952 1.00534 1.45020 1.08975 1.02268 1.80688 1.17948 0.92881 0.84946 0.92346 1.20645 0.93800 0.97084 1.10229 1.20561 0.98495 0.91906 0.97900 1.19915 0.93781 0.94808 1.08976 1.21054 0.93199 0.92354 0.91545 0.89656 1.22941 0.97755 0.99886 0.96747 1.22752 0.96834 0.99516 0.97740 1.22858 0.93493 0.98716 0.93657 1.62101 1.03201 1.36734 1.29112 1.20630 0.94520 0.95773 0.97011 1.20570 0.98641 0.91885 1.11186 0.92102 0.97258 0.97286 0.92604 0.92587 0.92613 0.92669 0.76741 0.86007 0.87059 0.91080 0.90805 0.90799 0.90978 0.90453 0.94040 0.83800 0.86396 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.65 55.43 0.76 -27.13 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.60 -17.10 9.11 -34.44 -0.31 -17.42 16 8 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 9 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 10 C -0.11 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 1.99 4.91 -4.05 -0.02 1.97 16 12 N -0.74 -10.70 5.73 -58.64 -0.34 -11.04 16 13 C 0.22 3.11 6.65 -83.79 -0.56 2.56 16 14 C -0.19 -2.64 9.31 -39.38 -0.37 -3.01 16 15 C -0.07 -0.82 8.69 -39.61 -0.34 -1.17 16 16 C -0.17 -1.90 4.73 -104.59 -0.49 -2.39 16 17 C 0.13 1.23 3.68 -67.87 -0.25 0.98 16 18 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 19 C -0.13 -1.14 6.48 -24.77 -0.16 -1.30 16 20 C -0.13 -0.97 7.08 -24.45 -0.17 -1.14 16 21 C 0.04 0.34 7.58 -2.29 -0.02 0.32 16 22 N -0.68 -6.60 7.15 -105.02 -0.75 -7.35 16 23 C -0.06 -0.67 9.67 -39.61 -0.38 -1.05 16 24 C -0.20 -2.44 9.90 -39.38 -0.39 -2.83 16 25 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 26 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 27 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 31 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 32 H 0.40 5.21 8.49 -40.82 -0.35 4.86 16 33 H 0.12 1.67 6.73 -52.49 -0.35 1.32 16 34 H 0.11 1.16 7.22 -52.49 -0.38 0.78 16 35 H 0.07 0.66 7.81 -51.93 -0.41 0.26 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.34 3.38 6.75 -39.30 -0.27 3.12 16 42 H 0.12 1.05 8.05 -52.48 -0.42 0.63 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -30.41 345.57 -11.16 -41.57 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.13 Total: 5.03 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -3.83 Total: -26.37 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.33 Total: -45.53 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.41 -11.16 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.023 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds