Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47294 * 179.97438 * 11 10 9 13 13 C 1.39673 * 120.00543 * 179.97438 * 12 11 10 14 14 C 1.38916 * 120.07008 * 359.72387 * 13 12 11 15 15 C 1.38101 * 119.92312 * 179.76580 * 14 13 12 16 16 C 1.38293 * 120.07353 * 0.51273 * 15 14 13 17 17 C 1.50697 * 119.92250 * 179.76571 * 16 15 14 18 18 H 1.09003 * 109.87985 * 200.67492 * 17 16 15 19 19 C 1.54328 * 109.89085 * 79.64753 * 17 16 15 20 20 C 1.55392 * 102.89950 * 218.40506 * 19 17 16 21 21 C 1.54913 * 101.74296 * 35.47928 * 20 19 17 22 22 N 1.47439 * 109.89038 * 321.70862 * 17 16 15 23 23 C 1.38283 * 120.14917 * 359.74017 * 16 15 14 24 24 C 1.38106 * 120.07599 * 0.02562 * 23 16 15 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 31 31 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 32 32 H 0.97006 * 119.99755 * 359.97438 * 12 11 10 33 33 H 1.07996 * 120.03666 * 0.02562 * 14 13 12 34 34 H 1.08001 * 119.96569 * 180.25546 * 15 14 13 35 35 H 1.09004 * 110.70076 * 336.69248 * 19 17 16 36 36 H 1.08999 * 110.70287 * 99.92451 * 19 17 16 37 37 H 1.08999 * 110.87353 * 277.38946 * 20 19 17 38 38 H 1.09000 * 111.02333 * 153.62950 * 20 19 17 39 39 H 1.08996 * 110.37255 * 204.19341 * 21 20 19 40 40 H 1.09002 * 110.37451 * 81.84700 * 21 20 19 41 41 H 1.00891 * 110.99905 * 356.14857 * 22 17 16 42 42 H 1.08004 * 119.96184 * 179.97438 * 23 16 15 43 43 H 1.07998 * 120.03608 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9670 -7.4175 0.0015 14 6 0.6016 -7.6731 0.0089 15 6 0.1447 -8.9763 0.0049 16 6 1.0448 -10.0263 0.0044 17 6 0.5424 -11.4470 0.0054 18 1 1.3235 -12.1161 0.3667 19 6 0.1201 -11.8557 -1.4216 20 6 -1.1506 -12.7153 -1.1745 21 6 -1.7929 -11.9885 0.0334 22 7 -0.6498 -11.5569 0.8658 23 6 2.4046 -9.7753 0.0024 24 6 2.8683 -8.4744 0.0014 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 0.8542 -5.0446 0.8914 31 1 0.8534 -5.0451 -0.8886 32 1 3.3862 -5.9233 -0.0005 33 1 -0.1018 -6.8536 0.0134 34 1 -0.9167 -9.1759 0.0064 35 1 -0.1202 -10.9762 -2.0190 36 1 0.9010 -12.4464 -1.9003 37 1 -0.8823 -13.7397 -0.9163 38 1 -1.8122 -12.6930 -2.0405 39 1 -2.4320 -12.6725 0.5917 40 1 -2.3644 -11.1239 -0.3041 41 1 -0.8470 -10.6800 1.3241 42 1 3.1049 -10.5975 0.0024 43 1 3.9305 -8.2791 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168431031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -15.489239 kcal Electronic energy + Delta-G solvation = -19996.537180 eV Core-core repulsion = 17039.110410 eV Total energy + Delta-G solvation = -2957.426770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.95141 -39.19206 -37.32081 -35.71230 -33.44195 -31.95091 -31.32655 -30.91465 -28.63737 -27.05302 -25.05059 -24.01601 -22.80879 -22.06147 -21.95783 -21.11093 -18.98886 -18.48999 -17.46987 -16.98046 -16.48031 -16.35951 -15.84083 -15.66443 -15.24659 -14.82155 -14.74428 -14.48600 -14.33154 -14.10174 -13.80608 -13.57039 -13.32894 -13.12978 -12.70851 -12.62215 -12.53276 -12.15295 -12.08160 -11.99556 -11.88517 -11.79656 -11.78063 -11.54589 -10.87989 -10.73606 -10.57558 -9.87502 -9.43537 -8.72275 -8.28570 -6.43329 0.48715 0.61605 1.51431 1.59711 1.79101 2.43804 2.56350 2.86407 3.12750 3.43023 3.72782 3.81543 3.92653 3.98133 4.02171 4.06846 4.07372 4.27445 4.38656 4.45068 4.52611 4.60284 4.63254 4.72199 4.76202 4.89094 4.91394 4.93872 4.96637 5.04900 5.10380 5.14673 5.29220 5.32023 5.40805 5.43611 5.45142 5.72884 5.89774 5.95815 5.98956 6.14754 6.34226 6.39825 6.54248 6.80832 7.38854 8.68944 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.002531 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.927384 B =11058.994844 C =11528.962243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.118 2.882 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.621 4.621 8 H 0.053 0.947 9 C 0.010 3.990 10 C -0.097 4.097 11 C 0.138 3.862 12 N -0.743 5.743 13 C 0.203 3.797 14 C -0.213 4.213 15 C -0.073 4.073 16 C -0.165 4.165 17 C 0.128 3.872 18 H 0.090 0.910 19 C -0.133 4.133 20 C -0.126 4.126 21 C 0.038 3.962 22 N -0.689 5.689 23 C -0.062 4.062 24 C -0.200 4.200 25 H 0.256 0.744 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.405 0.595 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.340 0.660 42 H 0.144 0.856 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -25.957 -1.661 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.939 3.061 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.659 4.659 8 H 0.071 0.929 9 C -0.027 4.027 10 C -0.135 4.135 11 C 0.014 3.986 12 N -0.372 5.372 13 C 0.099 3.901 14 C -0.236 4.236 15 C -0.092 4.092 16 C -0.169 4.169 17 C 0.019 3.981 18 H 0.108 0.892 19 C -0.172 4.172 20 C -0.164 4.164 21 C -0.091 4.091 22 N -0.320 5.320 23 C -0.081 4.081 24 C -0.222 4.222 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.240 0.760 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.904 -24.832 -1.389 24.944 hybrid contribution -0.066 -0.340 -0.439 0.560 sum 1.838 -25.172 -1.829 25.305 Atomic orbital electron populations 1.70921 1.07998 1.29918 1.48708 1.27484 0.96625 1.07016 0.92681 0.82925 0.74125 0.70959 0.78094 1.20919 1.19313 1.19312 1.22489 0.94802 0.93363 1.55221 0.92897 1.19096 0.95037 0.94161 0.94451 1.21445 0.98282 0.92380 1.01411 1.21187 0.92024 0.85366 1.00068 1.44753 1.08772 1.01950 1.81765 1.18129 0.93333 0.84893 0.93760 1.20732 0.93873 0.97659 1.11354 1.20685 0.99323 0.91482 0.97690 1.20175 0.93866 0.95453 1.07372 1.21108 0.93360 0.91284 0.92362 0.89196 1.22922 0.98636 0.99816 0.95796 1.22755 0.96414 0.99445 0.97764 1.22944 0.93220 0.98975 0.93959 1.62143 1.03786 1.36538 1.29533 1.20973 0.95017 0.96126 0.96027 1.20809 0.99287 0.91802 1.10348 0.93483 0.99002 0.99011 0.92247 0.92255 0.93206 0.93247 0.75956 0.87060 0.86091 0.92148 0.89614 0.90213 0.89880 0.89829 0.94013 0.84153 0.83805 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.65 21.45 0.29 -58.26 16 2 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 3 Si 1.12 50.07 29.90 68.60 2.05 52.12 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.62 -35.42 9.11 25.60 0.23 -35.19 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.01 0.52 4.28 29.85 0.13 0.65 16 10 C -0.10 -3.85 5.27 30.60 0.16 -3.69 16 11 C 0.14 4.64 4.91 86.38 0.42 5.07 16 12 N -0.74 -21.09 5.73 -339.42 -1.95 -23.03 16 13 C 0.20 5.51 6.65 38.21 0.25 5.76 16 14 C -0.21 -5.81 9.31 22.40 0.21 -5.61 16 15 C -0.07 -1.68 8.69 22.25 0.19 -1.48 16 16 C -0.17 -3.40 4.73 -19.84 -0.09 -3.49 16 17 C 0.13 2.21 3.68 44.52 0.16 2.37 16 18 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 19 C -0.13 -1.97 6.48 31.87 0.21 -1.76 16 20 C -0.13 -1.59 7.08 32.07 0.23 -1.37 16 21 C 0.04 0.56 7.58 86.77 0.66 1.21 16 22 N -0.69 -12.31 7.15 -486.18 -3.48 -15.79 16 23 C -0.06 -1.25 9.67 22.25 0.22 -1.03 16 24 C -0.20 -4.53 9.90 22.40 0.22 -4.31 16 25 H 0.26 16.10 7.22 -92.71 -0.67 15.43 16 26 H -0.01 -0.45 8.01 -2.39 -0.02 -0.47 16 27 H -0.01 -0.46 8.01 -2.39 -0.02 -0.48 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.72 7.94 -2.39 -0.02 1.70 16 31 H 0.05 1.70 7.96 -2.38 -0.02 1.69 16 32 H 0.40 10.19 8.49 -92.70 -0.79 9.41 16 33 H 0.11 3.18 6.73 -2.91 -0.02 3.16 16 34 H 0.12 2.46 7.22 -2.91 -0.02 2.44 16 35 H 0.06 1.03 7.81 -2.39 -0.02 1.01 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.34 6.35 6.75 -89.70 -0.61 5.75 16 42 H 0.14 2.10 8.05 -2.91 -0.02 2.08 16 43 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -65.12 345.57 0.28 -64.84 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.30 Total: 24.91 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.66 Total: -44.78 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -5.13 Total: -97.08 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -65.12 0.28 -64.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.349 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds