Wall clock time and date at job start Mon Mar 30 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30114 * 124.94858 * 2 1 4 4 C 1.35689 * 109.53872 * 180.02562 * 3 2 1 5 5 C 1.40645 * 107.13486 * 359.97438 * 4 3 2 6 6 N 1.32302 * 120.49884 * 180.02562 * 5 4 3 7 7 C 1.31681 * 121.67465 * 359.66348 * 6 5 4 8 8 C 1.39195 * 121.25938 * 0.60955 * 7 6 5 9 9 N 1.39975 * 120.30017 * 179.71192 * 8 7 6 10 10 C 1.46499 * 119.99990 * 359.72147 * 9 8 7 11 11 C 1.53002 * 109.47341 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47542 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47475 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99869 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99917 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00269 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47420 * 89.99842 * 17 15 13 19 19 H 1.48497 * 109.46948 * 210.00331 * 17 15 13 20 20 H 1.48502 * 109.46677 * 329.99423 * 17 15 13 21 21 C 1.38777 * 119.40505 * 359.43536 * 8 7 6 22 22 C 1.50700 * 120.94992 * 180.23235 * 21 8 7 23 23 N 1.36080 * 124.94796 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.28501 * 359.95565 * 23 2 1 25 25 H 1.08992 * 109.47177 * 89.97950 * 1 2 3 26 26 H 1.09000 * 109.47338 * 209.98296 * 1 2 3 27 27 H 1.09002 * 109.47140 * 329.97748 * 1 2 3 28 28 H 1.08003 * 119.37258 * 180.31724 * 7 6 5 29 29 H 0.97000 * 120.00512 * 179.44638 * 9 8 7 30 30 H 1.09005 * 109.47136 * 300.00002 * 10 9 8 31 31 H 1.09002 * 109.47352 * 60.00035 * 10 9 8 32 32 H 1.08997 * 109.47244 * 300.00414 * 11 10 9 33 33 H 1.09002 * 109.46787 * 59.99789 * 11 10 9 34 34 H 1.09005 * 109.47212 * 300.00272 * 12 11 10 35 35 H 1.09004 * 109.46747 * 59.99765 * 12 11 10 36 36 H 0.96998 * 120.00175 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.47099 * 89.99470 * 22 21 8 38 38 H 1.08998 * 109.47042 * 210.00524 * 22 21 8 39 39 H 1.09000 * 109.46418 * 330.00179 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5604 0.7059 -0.0006 5 6 3.6028 -0.6999 -0.0003 6 7 4.7624 -1.3367 -0.0003 7 6 5.9079 -0.6873 -0.0070 8 6 5.9495 0.7041 -0.0019 9 7 7.1785 1.3739 -0.0031 10 6 8.4288 0.6104 -0.0037 11 6 9.6159 1.5757 -0.0057 12 6 10.9217 0.7784 -0.0057 13 6 12.0909 1.7292 -0.0070 14 1 11.9198 2.7955 -0.0082 15 6 13.3791 1.2377 -0.0078 16 7 14.3995 2.0674 -0.0094 17 14 13.6752 -0.6067 -0.0078 18 1 13.7528 -1.0956 -1.4079 19 1 14.9512 -0.9032 0.6915 20 1 12.5569 -1.2875 0.6931 21 6 4.7614 1.4212 -0.0013 22 6 4.7657 2.9282 -0.0010 23 7 2.2865 -1.1154 -0.0005 24 1 1.9744 -2.0338 -0.0003 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3634 -0.8901 0.5136 27 1 -0.3633 0.8898 0.5142 28 1 6.8329 -1.2448 -0.0119 29 1 7.2025 2.3436 -0.0076 30 1 8.4718 -0.0171 0.8866 31 1 8.4705 -0.0179 -0.8934 32 1 9.5727 2.2029 -0.8961 33 1 9.5745 2.2044 0.8838 34 1 10.9647 0.1515 0.8850 35 1 10.9633 0.1494 -0.8950 36 1 15.3057 1.7217 -0.0096 37 1 4.7665 3.2917 -1.0286 38 1 3.8770 3.2940 0.5132 39 1 5.6570 3.2887 0.5125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168435880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:52 Heat of formation + Delta-G solvation = 66.146682 kcal Electronic energy + Delta-G solvation = -19921.382068 eV Core-core repulsion = 16863.954954 eV Total energy + Delta-G solvation = -3057.427115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33782 -39.08363 -36.21987 -34.48214 -33.36511 -32.01771 -31.74071 -30.66200 -28.12666 -26.88159 -26.49248 -23.43995 -22.09669 -21.75680 -20.91491 -20.29175 -18.13185 -17.46761 -16.86282 -16.28444 -15.97768 -15.42102 -14.98717 -14.82144 -14.21233 -13.93871 -13.69507 -13.42664 -13.16141 -12.93625 -12.70183 -12.63319 -12.58669 -12.02680 -11.97632 -11.80390 -11.14557 -11.07704 -10.95581 -10.83395 -10.14981 -9.96752 -9.75376 -9.70153 -9.26748 -9.24435 -8.57691 -8.41290 -7.25345 -6.07949 -4.06861 0.72986 1.50093 2.46386 2.65679 3.28770 3.36522 3.39149 3.41813 3.84900 3.98402 4.38893 4.41913 4.62514 4.77574 4.89625 4.99485 5.04781 5.13220 5.25788 5.40064 5.45351 5.56952 5.57582 5.65895 5.72736 5.82011 5.92531 6.06776 6.31074 6.34589 6.40230 6.55495 6.74393 7.04512 7.18929 7.31419 7.33037 7.64184 7.73285 7.74557 7.95991 8.48716 8.96239 9.53902 11.05363 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.044041 B = 0.002967 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.613355 B = 9433.733884 C =10032.993099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.292 3.708 3 N -0.493 5.493 4 C 0.055 3.945 5 C 0.185 3.815 6 N -0.453 5.453 7 C 0.083 3.917 8 C 0.166 3.834 9 N -0.733 5.733 10 C 0.115 3.885 11 C -0.112 4.112 12 C -0.010 4.010 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.093 4.093 22 C -0.097 4.097 23 N -0.589 5.589 24 H 0.422 0.578 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.166 0.834 29 H 0.402 0.598 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.252 -5.333 0.019 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 N -0.215 5.215 4 C -0.066 4.066 5 C -0.050 4.050 6 N -0.165 5.165 7 C -0.088 4.088 8 C 0.057 3.943 9 N -0.364 5.364 10 C -0.008 4.008 11 C -0.150 4.150 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.110 4.110 22 C -0.153 4.153 23 N -0.206 5.206 24 H 0.261 0.739 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.183 0.817 29 H 0.238 0.762 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.155 -5.494 0.031 27.705 hybrid contribution 0.591 -1.091 -0.032 1.241 sum -26.564 -6.585 -0.001 27.368 Atomic orbital electron populations 1.20377 0.83939 1.04760 1.04310 1.23574 0.95537 0.80742 0.97688 1.70346 1.00611 1.27386 1.23195 1.19126 0.91908 0.91025 1.04506 1.18727 0.85772 0.91119 1.09395 1.66233 0.95783 1.40504 1.13954 1.22198 0.94536 0.89798 1.02245 1.18377 0.86455 0.92527 0.96963 1.44916 1.01882 1.08583 1.80982 1.21703 0.82799 0.95502 1.00802 1.21660 0.93541 0.97943 1.01887 1.19503 0.92554 0.96226 0.96558 1.21096 0.89330 0.94526 1.51096 0.91024 1.25042 0.96143 0.97860 0.94499 1.69911 0.98685 1.34608 1.50932 0.86765 0.77775 0.86136 0.78536 1.20266 1.21392 1.18915 1.18719 0.88188 0.96248 1.07817 1.20450 1.02693 0.89940 1.02263 1.42556 1.03786 1.09916 1.64321 0.73868 0.89263 0.90118 0.88400 0.81722 0.76186 0.92286 0.92297 0.92070 0.92057 0.96336 0.96773 0.92685 0.91243 0.90806 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.00 0.38 0.03 16 2 C 0.29 2.89 8.08 -154.78 -1.25 1.64 16 3 N -0.49 -6.58 11.28 -8.20 -0.09 -6.67 16 4 C 0.05 0.81 6.97 -84.68 -0.59 0.22 16 5 C 0.18 2.61 8.46 -155.47 -1.31 1.30 16 6 N -0.45 -6.69 10.37 -12.08 -0.13 -6.81 16 7 C 0.08 1.17 10.47 -17.26 -0.18 0.99 16 8 C 0.17 2.32 6.65 -83.58 -0.56 1.77 16 9 N -0.73 -9.83 5.66 -58.51 -0.33 -10.16 16 10 C 0.12 1.69 4.92 -4.04 -0.02 1.67 16 11 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 12 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 13 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 17 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 21 C -0.09 -1.31 5.96 -103.85 -0.62 -1.93 16 22 C -0.10 -1.12 9.65 36.01 0.35 -0.77 16 23 N -0.59 -6.04 6.22 -9.43 -0.06 -6.10 16 24 H 0.42 2.91 8.96 -40.82 -0.37 2.54 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.17 2.06 6.72 -52.48 -0.35 1.71 16 29 H 0.40 4.97 6.60 -40.82 -0.27 4.70 16 30 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 31 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.06 0.67 6.66 -51.93 -0.35 0.32 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -33.76 324.70 -9.57 -43.33 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.47 Total: 2.31 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -4.49 Total: -10.65 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.17 Total: -56.54 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.76 -9.57 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.481 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds