Wall clock time and date at job start Mon Mar 30 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30114 * 124.94858 * 2 1 4 4 C 1.35689 * 109.53872 * 180.02562 * 3 2 1 5 5 C 1.40645 * 107.13486 * 359.97438 * 4 3 2 6 6 N 1.32302 * 120.49884 * 180.02562 * 5 4 3 7 7 C 1.31681 * 121.67465 * 359.66348 * 6 5 4 8 8 C 1.39195 * 121.25938 * 0.60955 * 7 6 5 9 9 N 1.39975 * 120.30017 * 179.71192 * 8 7 6 10 10 C 1.46499 * 119.99990 * 359.72147 * 9 8 7 11 11 C 1.53002 * 109.47341 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47542 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47475 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99869 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99917 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00269 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47420 * 89.99842 * 17 15 13 19 19 H 1.48497 * 109.46948 * 210.00331 * 17 15 13 20 20 H 1.48502 * 109.46677 * 329.99423 * 17 15 13 21 21 C 1.38777 * 119.40505 * 359.43536 * 8 7 6 22 22 C 1.50700 * 120.94992 * 180.23235 * 21 8 7 23 23 N 1.36080 * 124.94796 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.28501 * 359.95565 * 23 2 1 25 25 H 1.08992 * 109.47177 * 89.97950 * 1 2 3 26 26 H 1.09000 * 109.47338 * 209.98296 * 1 2 3 27 27 H 1.09002 * 109.47140 * 329.97748 * 1 2 3 28 28 H 1.08003 * 119.37258 * 180.31724 * 7 6 5 29 29 H 0.97000 * 120.00512 * 179.44638 * 9 8 7 30 30 H 1.09005 * 109.47136 * 300.00002 * 10 9 8 31 31 H 1.09002 * 109.47352 * 60.00035 * 10 9 8 32 32 H 1.08997 * 109.47244 * 300.00414 * 11 10 9 33 33 H 1.09002 * 109.46787 * 59.99789 * 11 10 9 34 34 H 1.09005 * 109.47212 * 300.00272 * 12 11 10 35 35 H 1.09004 * 109.46747 * 59.99765 * 12 11 10 36 36 H 0.96998 * 120.00175 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.47099 * 89.99470 * 22 21 8 38 38 H 1.08998 * 109.47042 * 210.00524 * 22 21 8 39 39 H 1.09000 * 109.46418 * 330.00179 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5604 0.7059 -0.0006 5 6 3.6028 -0.6999 -0.0003 6 7 4.7624 -1.3367 -0.0003 7 6 5.9079 -0.6873 -0.0070 8 6 5.9495 0.7041 -0.0019 9 7 7.1785 1.3739 -0.0031 10 6 8.4288 0.6104 -0.0037 11 6 9.6159 1.5757 -0.0057 12 6 10.9217 0.7784 -0.0057 13 6 12.0909 1.7292 -0.0070 14 1 11.9198 2.7955 -0.0082 15 6 13.3791 1.2377 -0.0078 16 7 14.3995 2.0674 -0.0094 17 14 13.6752 -0.6067 -0.0078 18 1 13.7528 -1.0956 -1.4079 19 1 14.9512 -0.9032 0.6915 20 1 12.5569 -1.2875 0.6931 21 6 4.7614 1.4212 -0.0013 22 6 4.7657 2.9282 -0.0010 23 7 2.2865 -1.1154 -0.0005 24 1 1.9744 -2.0338 -0.0003 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3634 -0.8901 0.5136 27 1 -0.3633 0.8898 0.5142 28 1 6.8329 -1.2448 -0.0119 29 1 7.2025 2.3436 -0.0076 30 1 8.4718 -0.0171 0.8866 31 1 8.4705 -0.0179 -0.8934 32 1 9.5727 2.2029 -0.8961 33 1 9.5745 2.2044 0.8838 34 1 10.9647 0.1515 0.8850 35 1 10.9633 0.1494 -0.8950 36 1 15.3057 1.7217 -0.0096 37 1 4.7665 3.2917 -1.0286 38 1 3.8770 3.2940 0.5132 39 1 5.6570 3.2887 0.5125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:51 Heat of formation + Delta-G solvation = 43.677795 kcal Electronic energy + Delta-G solvation = -19922.356393 eV Core-core repulsion = 16863.954954 eV Total energy + Delta-G solvation = -3058.401439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.24434 -40.07320 -37.41237 -35.77506 -34.86701 -33.48580 -32.68191 -31.64039 -29.37325 -27.89439 -27.73161 -24.90163 -23.08615 -22.92340 -21.89287 -21.74429 -19.16676 -18.85333 -18.36657 -17.40119 -16.88388 -16.53744 -16.26975 -16.15285 -15.77864 -14.82194 -14.76452 -14.51578 -14.32248 -13.93357 -13.90954 -13.75085 -13.57500 -13.29274 -12.99576 -12.78803 -12.68257 -12.62269 -11.97813 -11.94793 -11.78269 -11.65242 -11.54208 -11.29302 -10.81990 -10.73898 -10.26790 -9.36112 -8.28557 -8.27195 -6.31540 -0.21438 0.46271 1.39658 1.41380 1.53066 1.64866 1.79007 2.37338 2.38846 2.81921 3.08802 3.22659 3.50222 3.75694 3.82704 4.04167 4.15343 4.18325 4.27511 4.53496 4.58091 4.66012 4.74680 4.76142 4.76906 4.92059 4.95376 4.96489 5.07083 5.11689 5.16170 5.34315 5.48298 5.56783 5.61107 5.68082 6.21391 6.29245 6.32129 6.68132 6.77380 6.81741 6.96049 7.33193 8.89552 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.044041 B = 0.002967 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.613355 B = 9433.733884 C =10032.993099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.308 3.692 3 N -0.529 5.529 4 C 0.035 3.965 5 C 0.164 3.836 6 N -0.465 5.465 7 C 0.069 3.931 8 C 0.161 3.839 9 N -0.730 5.730 10 C 0.128 3.872 11 C -0.102 4.102 12 C -0.010 4.010 13 C -0.532 4.532 14 H 0.031 0.969 15 C 0.000 4.000 16 N -0.954 5.954 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.240 1.240 21 C -0.106 4.106 22 C -0.091 4.091 23 N -0.580 5.580 24 H 0.438 0.562 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.178 0.822 29 H 0.406 0.594 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.659 -7.453 0.002 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.040 3.960 3 N -0.253 5.253 4 C -0.086 4.086 5 C -0.072 4.072 6 N -0.177 5.177 7 C -0.101 4.101 8 C 0.053 3.947 9 N -0.362 5.362 10 C 0.005 3.995 11 C -0.140 4.140 12 C -0.048 4.048 13 C -0.570 4.570 14 H 0.049 0.951 15 C -0.197 4.197 16 N -0.595 5.595 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.163 1.163 21 C -0.123 4.123 22 C -0.148 4.148 23 N -0.198 5.198 24 H 0.280 0.720 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.195 0.805 29 H 0.243 0.757 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.607 -7.631 0.014 30.575 hybrid contribution 1.201 -0.335 -0.031 1.247 sum -28.407 -7.966 -0.016 29.502 Atomic orbital electron populations 1.20665 0.79990 1.06489 1.05997 1.24624 0.97339 0.79767 0.94247 1.70373 1.00296 1.29021 1.25563 1.19461 0.92774 0.91614 1.04737 1.19048 0.86835 0.91412 1.09873 1.66254 0.96206 1.40829 1.14448 1.22427 0.94964 0.90043 1.02667 1.18367 0.86401 0.92601 0.97374 1.44724 1.01386 1.08682 1.81378 1.21453 0.81825 0.94548 1.01709 1.21444 0.93073 0.98002 1.01516 1.19460 0.92506 0.95697 0.97148 1.21514 0.91520 0.93824 1.50181 0.95064 1.26074 0.95840 1.03546 0.94208 1.70078 0.99311 1.37256 1.52841 0.85630 0.78241 0.79418 0.79198 1.19226 1.21433 1.16307 1.19013 0.88271 0.97325 1.07656 1.20437 1.02982 0.88754 1.02650 1.42621 1.02453 1.11022 1.63713 0.72031 0.87367 0.87134 0.87876 0.80528 0.75712 0.91454 0.91381 0.92526 0.92554 0.95581 0.95702 0.92605 0.90737 0.91108 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 71.24 0.75 0.32 16 2 C 0.31 5.44 8.08 137.91 1.11 6.56 16 3 N -0.53 -13.60 11.28 -179.86 -2.03 -15.63 16 4 C 0.03 1.00 6.97 39.51 0.28 1.28 16 5 C 0.16 4.49 8.46 133.79 1.13 5.62 16 6 N -0.47 -13.34 10.37 -192.14 -1.99 -15.34 16 7 C 0.07 1.88 10.47 84.95 0.89 2.77 16 8 C 0.16 4.37 6.65 38.20 0.25 4.63 16 9 N -0.73 -18.67 5.66 -339.01 -1.92 -20.59 16 10 C 0.13 3.52 4.92 86.38 0.43 3.94 16 11 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 12 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 13 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 14 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 15 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 16 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 17 Si 0.95 43.37 27.47 68.60 1.88 45.25 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 21 C -0.11 -2.93 5.96 -19.36 -0.12 -3.05 16 22 C -0.09 -2.08 9.65 71.24 0.69 -1.39 16 23 N -0.58 -10.84 6.22 -183.75 -1.14 -11.98 16 24 H 0.44 5.04 8.96 -92.71 -0.83 4.21 16 25 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.18 4.15 6.72 -2.91 -0.02 4.13 16 29 H 0.41 9.65 6.60 -92.71 -0.61 9.04 16 30 H 0.07 1.76 7.97 -2.38 -0.02 1.74 16 31 H 0.07 1.77 7.95 -2.39 -0.02 1.75 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.03 1.11 7.20 -2.38 -0.02 1.09 16 35 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 39 H 0.07 1.48 6.66 -2.39 -0.02 1.47 16 Total: -1.00 -74.70 324.70 1.09 -73.62 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.42 Total: 16.52 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 6.40 Total: -12.39 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.78 Total: -123.00 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -74.70 1.09 -73.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.293 kcal (2) G-P(sol) polarization free energy of solvation -74.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds