Wall clock time and date at job start Mon Mar 30 2020 01:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47235 * 2 1 4 4 C 1.46847 * 110.99806 * 294.21105 * 3 2 1 5 5 C 1.53033 * 109.52161 * 174.16220 * 4 3 2 6 6 C 1.53123 * 109.28069 * 59.17450 * 5 4 3 7 7 N 1.46506 * 109.52112 * 182.43950 * 6 5 4 8 8 C 1.38234 * 119.99951 * 273.41838 * 7 6 5 9 9 C 1.38977 * 120.00171 * 5.33691 * 8 7 6 10 10 H 1.08001 * 120.00085 * 312.27616 * 9 8 7 11 11 C 1.40824 * 119.99909 * 132.27651 * 9 8 7 12 12 N 1.30344 * 119.99814 * 159.39462 * 11 9 8 13 13 Si 1.86796 * 119.99980 * 339.39727 * 11 9 8 14 14 H 1.48490 * 109.47217 * 95.72117 * 13 11 9 15 15 H 1.48504 * 109.47039 * 215.72357 * 13 11 9 16 16 H 1.48504 * 109.47027 * 335.71910 * 13 11 9 17 17 C 1.41154 * 119.99586 * 185.34096 * 8 7 6 18 18 C 1.43196 * 119.99745 * 173.48416 * 17 8 7 19 19 N 8.74326 * 141.84137 * 135.59529 * 3 1 2 20 20 C 1.43196 * 120.00038 * 353.47563 * 17 8 7 21 21 N 8.85963 * 111.47484 * 4.18059 * 2 1 3 22 22 C 1.53113 * 109.16155 * 302.34675 * 6 5 4 23 23 C 1.46846 * 110.99950 * 169.99682 * 3 2 1 24 24 H 1.08998 * 109.47051 * 59.99982 * 1 2 3 25 25 H 1.09002 * 109.47244 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47379 * 300.00292 * 1 2 3 27 27 H 1.08995 * 109.47464 * 239.99920 * 2 1 3 28 28 H 1.09006 * 109.47359 * 119.99988 * 2 1 3 29 29 H 1.09002 * 109.46186 * 294.17204 * 4 3 2 30 30 H 1.08990 * 109.46475 * 54.14552 * 4 3 2 31 31 H 1.09004 * 109.50472 * 299.23363 * 5 4 3 32 32 H 1.09005 * 109.50482 * 179.11920 * 5 4 3 33 33 H 1.09005 * 109.57101 * 62.28532 * 6 5 4 34 34 H 0.96998 * 119.99801 * 93.42067 * 7 6 5 35 35 H 0.97006 * 119.99552 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.50462 * 297.71187 * 22 6 5 37 37 H 1.08998 * 109.53617 * 177.61010 * 22 6 5 38 38 H 1.08998 * 109.46429 * 305.85894 * 23 3 2 39 39 H 1.09005 * 109.45995 * 65.83865 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0686 -1.2504 5 6 2.0607 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 7 3.9428 5.0566 -0.7571 8 6 4.2428 5.8135 -1.8742 9 6 4.0818 5.2723 -3.1441 10 1 4.4708 4.2894 -3.3655 11 6 3.4114 6.0054 -4.1422 12 7 3.5950 5.7138 -5.3992 13 14 2.2590 7.3959 -3.6646 14 1 2.9893 8.6873 -3.7262 15 1 1.1101 7.4316 -4.6047 16 1 1.7614 7.1739 -2.2831 17 6 4.7127 7.1361 -1.7250 18 6 5.1554 7.8721 -2.8709 19 7 5.5067 8.4559 -3.7799 20 6 4.7465 7.7420 -0.4280 21 7 4.7734 8.2226 0.6010 22 6 3.9174 2.8875 0.3762 23 6 3.4679 1.4311 0.2381 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1942 1.6027 -2.0816 30 1 0.5904 1.9905 -1.4148 31 1 1.5214 4.0138 -0.3342 32 1 1.8116 4.0475 -2.0908 33 1 4.1087 3.2138 -1.7463 34 1 3.9807 5.4579 0.1252 35 1 3.1335 6.2192 -6.0867 36 1 3.4074 3.3470 1.2228 37 1 4.9948 2.9219 0.5380 38 1 3.7027 0.8900 1.1547 39 1 3.9887 0.9684 -0.6003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169230564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:57 Heat of formation + Delta-G solvation = 56.100186 kcal Electronic energy + Delta-G solvation = -21090.861581 eV Core-core repulsion = 18032.998818 eV Total energy + Delta-G solvation = -3057.862763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.33220 -37.36074 -35.41626 -34.85470 -33.86974 -32.84572 -30.82691 -30.37004 -28.29074 -26.90549 -24.00682 -23.02555 -21.46534 -20.80669 -19.83419 -18.55171 -17.57636 -16.42400 -15.79877 -15.43885 -15.20871 -14.62543 -14.44469 -13.82580 -13.54711 -13.20634 -13.08728 -13.03599 -12.67021 -12.42294 -12.19391 -11.97380 -11.87585 -11.79999 -11.71985 -11.52990 -11.28589 -11.13397 -11.02505 -10.95839 -10.71733 -10.62688 -10.50323 -10.19880 -10.11223 -9.55092 -9.17501 -8.33127 -7.27692 -6.71654 -5.24917 2.51330 3.06767 3.15436 3.23750 3.77167 3.84013 3.87146 3.93196 4.05179 4.34840 4.51042 4.80841 4.91889 5.06910 5.10653 5.19764 5.25743 5.35821 5.42019 5.51240 5.55057 5.63332 5.71334 5.74927 5.80298 5.81609 5.96179 6.07811 6.14100 6.24239 6.26919 6.45021 6.59853 6.67985 7.07156 7.11197 7.14352 7.32789 7.82585 8.02684 8.38893 8.52022 8.86384 9.19644 9.70306 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.005789 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.809333 B = 4835.940412 C = 5570.710524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.056 3.944 5 C -0.128 4.128 6 C 0.158 3.842 7 N -0.728 5.728 8 C 0.417 3.583 9 C -0.467 4.467 10 H 0.111 0.889 11 C 0.112 3.888 12 N -0.762 5.762 13 Si 0.887 3.113 14 H -0.246 1.246 15 H -0.282 1.282 16 H -0.243 1.243 17 C -0.318 4.318 18 C 0.320 3.680 19 N -0.514 5.514 20 C 0.305 3.695 21 N -0.530 5.530 22 C -0.127 4.127 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.388 0.612 35 H 0.295 0.705 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -13.882 6.406 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.266 5.266 4 C -0.072 4.072 5 C -0.167 4.167 6 C 0.052 3.948 7 N -0.352 5.352 8 C 0.301 3.699 9 C -0.499 4.499 10 H 0.128 0.872 11 C -0.116 4.116 12 N -0.383 5.383 13 Si 0.710 3.290 14 H -0.170 1.170 15 H -0.208 1.208 16 H -0.166 1.166 17 C -0.338 4.338 18 C 0.011 3.989 19 N -0.196 5.196 20 C -0.002 4.002 21 N -0.213 5.213 22 C -0.165 4.165 23 C -0.066 4.066 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.222 0.778 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.386 -12.200 6.653 15.293 hybrid contribution -0.158 -0.176 -0.436 0.496 sum -6.544 -12.377 6.217 15.318 Atomic orbital electron populations 1.21808 0.95021 1.01247 1.02639 1.22032 0.96070 0.89149 1.00460 1.62008 1.13735 1.15061 1.35821 1.22138 1.00801 0.94806 0.89478 1.22012 0.96451 0.94771 1.03457 1.20827 0.94933 0.81600 0.97429 1.45220 1.71892 1.10467 1.07619 1.17158 0.81002 0.85058 0.86683 1.18865 1.33981 1.05443 0.91625 0.87165 1.26019 0.95758 0.96166 0.93663 1.69412 1.31669 1.35809 1.01397 0.86586 0.79304 0.82475 0.80641 1.17013 1.20791 1.16612 1.12748 1.41907 0.97044 0.82146 1.24367 0.90854 0.91809 0.91848 1.81040 1.17496 1.10754 1.10281 1.25336 0.90578 0.92159 0.92158 1.81092 1.18061 1.09670 1.12489 1.21906 1.01150 0.94880 0.98594 1.21987 0.87418 0.96694 1.00527 0.92487 0.92601 0.91905 0.95077 0.91107 0.94612 0.90580 0.91413 0.89781 0.89681 0.77752 0.89397 0.90871 0.91000 0.90831 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.84 37.15 0.37 -0.89 16 2 C 0.05 0.47 5.68 -3.82 -0.02 0.45 16 3 N -0.54 -6.01 4.66 -234.68 -1.09 -7.10 16 4 C 0.06 0.67 5.29 -3.84 -0.02 0.65 16 5 C -0.13 -1.79 5.65 -26.65 -0.15 -1.94 16 6 C 0.16 2.27 2.34 -67.81 -0.16 2.11 16 7 N -0.73 -12.40 5.12 -51.80 -0.27 -12.67 16 8 C 0.42 8.54 5.44 -83.60 -0.45 8.09 16 9 C -0.47 -10.19 7.48 -38.33 -0.29 -10.48 16 10 H 0.11 2.44 7.02 -52.49 -0.37 2.07 16 11 C 0.11 2.58 4.56 -17.21 -0.08 2.50 16 12 N -0.76 -18.12 13.90 55.59 0.77 -17.35 16 13 Si 0.89 19.33 24.83 -169.99 -4.22 15.11 16 14 H -0.25 -5.83 6.06 56.52 0.34 -5.49 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 16 H -0.24 -5.15 7.11 56.52 0.40 -4.75 16 17 C -0.32 -7.13 4.48 -104.94 -0.47 -7.60 16 18 C 0.32 7.90 10.56 -22.47 -0.24 7.66 16 19 N -0.51 -13.34 18.05 41.84 0.76 -12.59 16 20 C 0.30 6.77 14.10 -22.47 -0.32 6.45 16 21 N -0.53 -12.01 18.54 41.84 0.78 -11.24 16 22 C -0.13 -1.50 5.57 -26.65 -0.15 -1.65 16 23 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 24 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.07 0.59 7.99 -51.93 -0.41 0.18 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.85 6.21 -51.93 -0.32 0.53 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.33 7.68 -51.93 -0.40 0.93 16 33 H 0.09 1.32 6.64 -51.93 -0.34 0.97 16 34 H 0.39 6.46 7.46 -40.82 -0.30 6.15 16 35 H 0.29 6.55 8.29 -40.82 -0.34 6.22 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -25.99 322.67 -5.89 -31.88 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.48 Total: 3.11 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.00 Total: 5.98 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.95 Total: -60.94 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.22 Total: 15.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -25.99 -5.89 -31.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169230564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.976 kcal (2) G-P(sol) polarization free energy of solvation -25.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds