Wall clock time and date at job start Mon Mar 30 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47235 * 2 1 4 4 C 1.46847 * 110.99806 * 294.21105 * 3 2 1 5 5 C 1.53033 * 109.52161 * 174.16220 * 4 3 2 6 6 C 1.53123 * 109.28069 * 59.17450 * 5 4 3 7 7 N 1.46506 * 109.52112 * 182.43950 * 6 5 4 8 8 C 1.38234 * 119.99951 * 273.41838 * 7 6 5 9 9 C 1.38977 * 120.00171 * 5.33691 * 8 7 6 10 10 H 1.08001 * 120.00085 * 312.27616 * 9 8 7 11 11 C 1.40824 * 119.99909 * 132.27651 * 9 8 7 12 12 N 1.30344 * 119.99814 * 159.39462 * 11 9 8 13 13 Si 1.86796 * 119.99980 * 339.39727 * 11 9 8 14 14 H 1.48490 * 109.47217 * 95.72117 * 13 11 9 15 15 H 1.48504 * 109.47039 * 215.72357 * 13 11 9 16 16 H 1.48504 * 109.47027 * 335.71910 * 13 11 9 17 17 C 1.41154 * 119.99586 * 185.34096 * 8 7 6 18 18 C 1.43196 * 119.99745 * 173.48416 * 17 8 7 19 19 N 8.74326 * 141.84137 * 135.59529 * 3 1 2 20 20 C 1.43196 * 120.00038 * 353.47563 * 17 8 7 21 21 N 8.85963 * 111.47484 * 4.18059 * 2 1 3 22 22 C 1.53113 * 109.16155 * 302.34675 * 6 5 4 23 23 C 1.46846 * 110.99950 * 169.99682 * 3 2 1 24 24 H 1.08998 * 109.47051 * 59.99982 * 1 2 3 25 25 H 1.09002 * 109.47244 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47379 * 300.00292 * 1 2 3 27 27 H 1.08995 * 109.47464 * 239.99920 * 2 1 3 28 28 H 1.09006 * 109.47359 * 119.99988 * 2 1 3 29 29 H 1.09002 * 109.46186 * 294.17204 * 4 3 2 30 30 H 1.08990 * 109.46475 * 54.14552 * 4 3 2 31 31 H 1.09004 * 109.50472 * 299.23363 * 5 4 3 32 32 H 1.09005 * 109.50482 * 179.11920 * 5 4 3 33 33 H 1.09005 * 109.57101 * 62.28532 * 6 5 4 34 34 H 0.96998 * 119.99801 * 93.42067 * 7 6 5 35 35 H 0.97006 * 119.99552 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.50462 * 297.71187 * 22 6 5 37 37 H 1.08998 * 109.53617 * 177.61010 * 22 6 5 38 38 H 1.08998 * 109.46429 * 305.85894 * 23 3 2 39 39 H 1.09005 * 109.45995 * 65.83865 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0686 -1.2504 5 6 2.0607 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 7 3.9428 5.0566 -0.7571 8 6 4.2428 5.8135 -1.8742 9 6 4.0818 5.2723 -3.1441 10 1 4.4708 4.2894 -3.3655 11 6 3.4114 6.0054 -4.1422 12 7 3.5950 5.7138 -5.3992 13 14 2.2590 7.3959 -3.6646 14 1 2.9893 8.6873 -3.7262 15 1 1.1101 7.4316 -4.6047 16 1 1.7614 7.1739 -2.2831 17 6 4.7127 7.1361 -1.7250 18 6 5.1554 7.8721 -2.8709 19 7 5.5067 8.4559 -3.7799 20 6 4.7465 7.7420 -0.4280 21 7 4.7734 8.2226 0.6010 22 6 3.9174 2.8875 0.3762 23 6 3.4679 1.4311 0.2381 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1942 1.6027 -2.0816 30 1 0.5904 1.9905 -1.4148 31 1 1.5214 4.0138 -0.3342 32 1 1.8116 4.0475 -2.0908 33 1 4.1087 3.2138 -1.7463 34 1 3.9807 5.4579 0.1252 35 1 3.1335 6.2192 -6.0867 36 1 3.4074 3.3470 1.2228 37 1 4.9948 2.9219 0.5380 38 1 3.7027 0.8900 1.1547 39 1 3.9887 0.9684 -0.6003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169230564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:56 Heat of formation + Delta-G solvation = 39.864919 kcal Electronic energy + Delta-G solvation = -21091.565595 eV Core-core repulsion = 18032.998818 eV Total energy + Delta-G solvation = -3058.566777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43212 -38.84666 -36.99693 -36.71125 -35.48611 -34.21722 -31.86293 -31.57962 -29.44864 -28.68056 -25.03575 -24.05524 -22.55605 -22.21997 -20.91283 -20.36022 -19.21362 -17.81219 -17.22149 -16.85648 -16.05653 -15.95509 -15.35713 -15.09962 -14.92329 -14.69541 -14.56456 -14.32351 -14.21031 -13.97645 -13.73990 -13.54871 -13.32427 -13.23515 -12.87862 -12.80240 -12.60599 -12.53265 -12.46046 -12.19424 -12.05664 -11.96110 -11.77693 -11.57932 -11.29064 -11.18371 -10.71830 -9.18609 -9.06247 -8.38716 -7.03214 0.77366 1.32664 1.37466 1.48569 1.94168 2.09779 2.18665 2.27329 2.56128 2.79817 3.03647 3.30108 3.76070 3.88482 4.00173 4.20053 4.25993 4.38061 4.43222 4.47169 4.60062 4.62156 4.71719 4.74559 4.78468 4.97597 4.99165 5.02648 5.08666 5.20578 5.22869 5.29015 5.39856 5.46200 5.53081 5.70376 6.10691 6.22569 6.26656 6.31586 6.72446 6.95571 7.07493 7.29664 7.95418 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.005789 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.809333 B = 4835.940412 C = 5570.710524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.548 5.548 4 C 0.062 3.938 5 C -0.124 4.124 6 C 0.154 3.846 7 N -0.714 5.714 8 C 0.432 3.568 9 C -0.472 4.472 10 H 0.106 0.894 11 C 0.098 3.902 12 N -0.789 5.789 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.268 1.268 16 H -0.234 1.234 17 C -0.328 4.328 18 C 0.323 3.677 19 N -0.545 5.545 20 C 0.312 3.688 21 N -0.535 5.535 22 C -0.119 4.119 23 C 0.064 3.936 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.394 0.606 35 H 0.299 0.701 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -15.490 7.982 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.273 5.273 4 C -0.066 4.066 5 C -0.163 4.163 6 C 0.050 3.950 7 N -0.336 5.336 8 C 0.313 3.687 9 C -0.505 4.505 10 H 0.124 0.876 11 C -0.128 4.128 12 N -0.411 5.411 13 Si 0.731 3.269 14 H -0.199 1.199 15 H -0.193 1.193 16 H -0.156 1.156 17 C -0.348 4.348 18 C 0.015 3.985 19 N -0.228 5.228 20 C 0.005 3.995 21 N -0.218 5.218 22 C -0.157 4.157 23 C -0.065 4.065 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.084 -13.849 8.264 17.614 hybrid contribution 0.057 0.272 -0.859 0.903 sum -7.027 -13.577 7.405 16.987 Atomic orbital electron populations 1.21789 0.94465 1.02127 1.02061 1.22112 0.96531 0.88029 1.01116 1.62025 1.14063 1.16281 1.34953 1.22025 1.01234 0.93389 0.89964 1.21921 0.95890 0.96216 1.02247 1.21033 0.95198 0.80025 0.98790 1.45292 1.69987 1.11418 1.06886 1.17013 0.79804 0.84604 0.87289 1.18842 1.34424 1.05189 0.92035 0.87625 1.26311 0.96183 0.96659 0.93697 1.69427 1.32837 1.36924 1.01927 0.86280 0.79003 0.80228 0.81437 1.19889 1.19288 1.15586 1.12830 1.42802 0.97591 0.81624 1.24744 0.90411 0.91410 0.91943 1.81024 1.18932 1.11673 1.11177 1.25193 0.90352 0.91993 0.91925 1.81100 1.18378 1.09663 1.12660 1.21851 1.01726 0.95354 0.96796 1.22014 0.87162 0.95777 1.01520 0.93106 0.91062 0.92374 0.95009 0.89797 0.95135 0.89789 0.91533 0.91835 0.90636 0.77113 0.88977 0.90672 0.90242 0.88837 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.84 71.98 0.71 -1.41 16 2 C 0.05 0.78 5.68 86.30 0.49 1.27 16 3 N -0.55 -10.80 4.66 -896.38 -4.17 -14.97 16 4 C 0.06 1.39 5.29 86.32 0.46 1.85 16 5 C -0.12 -3.30 5.65 30.65 0.17 -3.13 16 6 C 0.15 4.19 2.34 45.07 0.11 4.30 16 7 N -0.71 -23.19 5.12 -317.78 -1.63 -24.82 16 8 C 0.43 17.30 5.44 39.03 0.21 17.51 16 9 C -0.47 -20.41 7.48 23.08 0.17 -20.24 16 10 H 0.11 4.67 7.02 -2.91 -0.02 4.64 16 11 C 0.10 4.47 4.56 85.55 0.39 4.86 16 12 N -0.79 -37.62 13.90 21.98 0.31 -37.31 16 13 Si 0.91 38.94 24.83 68.60 1.70 40.65 16 14 H -0.27 -13.03 6.06 99.48 0.60 -12.42 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.23 -9.52 7.11 99.48 0.71 -8.82 16 17 C -0.33 -14.41 4.48 -20.07 -0.09 -14.50 16 18 C 0.32 15.89 10.56 88.33 0.93 16.82 16 19 N -0.55 -28.51 18.05 19.00 0.34 -28.17 16 20 C 0.31 13.45 14.10 88.33 1.25 14.69 16 21 N -0.53 -23.38 18.54 19.00 0.35 -23.02 16 22 C -0.12 -2.52 5.57 30.64 0.17 -2.35 16 23 C 0.06 1.17 5.46 86.33 0.47 1.64 16 24 H 0.05 0.79 6.43 -2.39 -0.02 0.78 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 28 H 0.08 1.13 7.99 -2.38 -0.02 1.11 16 29 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.75 6.21 -2.39 -0.01 1.73 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.96 7.68 -2.38 -0.02 1.94 16 33 H 0.08 2.25 6.64 -2.38 -0.02 2.23 16 34 H 0.39 12.28 7.46 -92.71 -0.69 11.58 16 35 H 0.30 13.36 8.29 -92.70 -0.77 12.59 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.40 8.01 -2.39 -0.02 1.38 16 39 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -53.88 322.67 2.62 -51.26 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.28 Total: 15.08 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 5.44 Total: 21.30 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -4.80 Total: -128.29 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.70 Total: 40.65 kcal Total: -53.88 2.62 -51.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169230564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.120 kcal (2) G-P(sol) polarization free energy of solvation -53.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds