Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36354 * 120.08173 * 2 1 4 4 C 1.39545 * 120.15935 * 180.25576 * 3 2 1 5 5 N 1.38854 * 119.84528 * 179.75917 * 4 3 2 6 6 C 1.46505 * 120.00451 * 179.71996 * 5 4 3 7 7 C 1.53002 * 109.47157 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46812 * 180.02562 * 7 6 5 9 9 H 1.08993 * 110.33356 * 54.29576 * 8 7 6 10 10 C 1.54902 * 110.46528 * 176.62078 * 8 7 6 11 11 C 1.55134 * 101.65304 * 155.94667 * 10 8 7 12 12 C 1.54315 * 103.01933 * 324.34148 * 11 10 8 13 13 N 1.47447 * 107.23212 * 22.28631 * 12 11 10 14 14 C 1.39589 * 120.31476 * 359.47931 * 4 3 2 15 15 C 1.36324 * 120.16129 * 0.28015 * 14 4 3 16 16 C 1.40866 * 120.07583 * 179.76163 * 2 1 3 17 17 C 1.41133 * 120.15973 * 0.02562 * 16 2 1 18 18 H 1.07999 * 119.99686 * 333.64354 * 17 16 2 19 19 C 1.39865 * 120.00010 * 153.64302 * 17 16 2 20 20 N 1.30900 * 120.00408 * 343.80054 * 19 17 16 21 21 Si 1.86801 * 119.99912 * 163.79526 * 19 17 16 22 22 H 1.48500 * 109.47267 * 94.96525 * 21 19 17 23 23 H 1.48503 * 109.47529 * 214.96415 * 21 19 17 24 24 H 1.48501 * 109.47114 * 334.96666 * 21 19 17 25 25 H 1.09005 * 109.47414 * 270.24193 * 1 2 3 26 26 H 1.09005 * 109.47305 * 30.24104 * 1 2 3 27 27 H 1.08998 * 109.47422 * 150.24002 * 1 2 3 28 28 H 1.07998 * 119.91965 * 0.02562 * 3 2 1 29 29 H 0.97006 * 120.00257 * 359.72593 * 5 4 3 30 30 H 1.08997 * 109.46571 * 60.00362 * 6 5 4 31 31 H 1.08999 * 109.46899 * 300.00251 * 6 5 4 32 32 H 1.08997 * 109.47074 * 60.00683 * 7 6 5 33 33 H 1.08995 * 109.47025 * 300.00224 * 7 6 5 34 34 H 1.09000 * 110.99027 * 274.03560 * 10 8 7 35 35 H 1.09004 * 110.99671 * 37.85123 * 10 8 7 36 36 H 1.09001 * 110.70839 * 205.96123 * 11 10 8 37 37 H 1.09003 * 110.85959 * 82.79486 * 11 10 8 38 38 H 1.09001 * 109.89198 * 262.87713 * 12 11 10 39 39 H 1.09004 * 110.02067 * 141.76598 * 12 11 10 40 40 H 1.00899 * 110.99589 * 238.72143 * 13 12 11 41 41 H 1.08004 * 119.91837 * 180.25752 * 14 4 3 42 42 H 1.08003 * 120.08052 * 179.97438 * 15 14 4 43 43 H 0.96997 * 120.00194 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0054 5 7 4.2753 2.3871 -0.0104 6 6 5.7403 2.3932 -0.0099 7 6 6.2443 3.8378 -0.0167 8 6 7.7744 3.8440 -0.0168 9 1 8.1555 3.2453 -0.8439 10 6 8.3100 5.2945 -0.1091 11 6 9.7201 5.1486 0.5210 12 6 9.4984 4.0984 1.6297 13 7 8.2911 3.3320 1.2703 14 6 4.2921 -0.0223 0.0001 15 6 3.6220 -1.2094 0.0051 16 6 2.2129 -1.2190 0.0051 17 6 1.5123 -2.4441 0.0096 18 1 0.5166 -2.4951 0.4247 19 6 2.1075 -3.5921 -0.5234 20 7 3.1558 -3.4855 -1.3001 21 14 1.4066 -5.2776 -0.1267 22 1 0.4722 -5.6912 -1.2042 23 1 2.5132 -6.2628 -0.0261 24 1 0.6772 -5.2188 1.1654 25 1 -0.3634 0.0043 1.0277 26 1 -0.3634 0.8878 -0.5176 27 1 -0.3634 -0.8921 -0.5101 28 1 1.6505 2.1152 0.0004 29 1 3.7869 3.2252 -0.0142 30 1 6.1060 1.8770 -0.8975 31 1 6.1054 1.8847 0.8825 32 1 5.8786 4.3544 0.8707 33 1 5.8792 4.3458 -0.9092 34 1 8.3780 5.6203 -1.1471 35 1 7.6910 5.9773 0.4729 36 1 10.0515 6.0953 0.9477 37 1 10.4384 4.7866 -0.2146 38 1 9.3499 4.5963 2.5879 39 1 10.3578 3.4305 1.6884 40 1 7.5911 3.3998 1.9938 41 1 5.3721 -0.0133 0.0001 42 1 4.1697 -2.1402 0.0089 43 1 3.5687 -4.2817 -1.6694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169566760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = 6.702540 kcal Electronic energy + Delta-G solvation = -20426.280469 eV Core-core repulsion = 17469.816007 eV Total energy + Delta-G solvation = -2956.464463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.07866 -38.00362 -35.48722 -33.30277 -31.95346 -30.65943 -30.21197 -28.81460 -26.85850 -25.81019 -23.91834 -22.61814 -21.12105 -21.02411 -20.46464 -18.98448 -17.03389 -16.47931 -15.98155 -15.67479 -14.87826 -14.74320 -14.65555 -13.85978 -13.70436 -13.44621 -12.98556 -12.77672 -12.49875 -12.45354 -11.98620 -11.83355 -11.64747 -11.56124 -11.43119 -11.25228 -11.06628 -11.01046 -10.94397 -10.86435 -10.67208 -10.55299 -10.32599 -9.49846 -9.19039 -9.12083 -8.59985 -8.38149 -7.26235 -6.56574 -6.29189 -3.96901 2.95672 3.13096 3.18460 3.23444 3.40975 3.99298 4.10068 4.25183 4.46025 4.58980 4.79106 4.83017 5.03428 5.13861 5.22149 5.28435 5.38341 5.56360 5.66631 5.70771 5.73977 5.81138 5.84380 6.03452 6.25998 6.30452 6.33103 6.39357 6.50274 6.73856 6.75767 6.80793 6.99815 7.08563 7.23958 7.29212 7.43154 7.68676 7.81954 7.89992 8.22003 8.38541 8.56278 8.77710 8.86550 9.12921 9.22811 10.44519 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.003290 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.793519 B = 8509.119890 C = 9237.085962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.159 4.159 3 C -0.160 4.160 4 C 0.097 3.903 5 N -0.765 5.765 6 C 0.143 3.857 7 C -0.132 4.132 8 C 0.082 3.918 9 H 0.089 0.911 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.046 3.954 13 N -0.680 5.680 14 C -0.167 4.167 15 C -0.120 4.120 16 C 0.077 3.923 17 C -0.463 4.463 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.809 5.809 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.381 0.619 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.341 0.659 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 13.751 2.691 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.161 4.161 3 C -0.182 4.182 4 C 0.000 4.000 5 N -0.400 5.400 6 C 0.017 3.983 7 C -0.170 4.170 8 C -0.028 4.028 9 H 0.107 0.893 10 C -0.189 4.189 11 C -0.180 4.180 12 C -0.083 4.083 13 N -0.310 5.310 14 C -0.189 4.189 15 C -0.140 4.140 16 C 0.074 3.926 17 C -0.494 4.494 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.437 5.437 21 Si 0.725 3.275 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.187 1.187 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.213 0.787 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.158 0.842 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.728 12.927 2.287 16.339 hybrid contribution -0.700 0.399 0.297 0.859 sum 9.028 13.326 2.585 16.302 Atomic orbital electron populations 1.20410 0.93750 1.00455 0.99533 1.19298 0.94111 0.92772 1.09906 1.19642 0.91533 0.96366 1.10652 1.17337 0.90588 0.85176 1.06859 1.43898 1.03528 1.05138 1.87476 1.20949 0.81976 0.94539 1.00816 1.22013 0.94404 0.98125 1.02494 1.22490 0.93506 0.93299 0.93475 0.89281 1.23196 0.96281 0.97863 1.01581 1.22768 0.97438 0.99197 0.98591 1.22629 0.94443 0.94181 0.97077 1.61837 1.08240 1.55962 1.04927 1.20107 0.97222 0.91984 1.09609 1.20919 0.94616 0.96063 1.02363 1.17349 0.91624 0.91605 0.92052 1.19342 1.01969 0.92573 1.35536 0.90800 1.25790 0.94441 1.00827 0.93031 1.69851 1.19315 1.30932 1.23604 0.86439 0.79276 0.81935 0.79800 1.19942 1.20354 1.18727 0.94087 0.94584 0.91946 0.89738 0.78664 0.93557 0.92806 0.91775 0.90949 0.90728 0.91392 0.91277 0.91002 0.93204 0.90821 0.84217 0.89343 0.86472 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 9.39 36.01 0.34 -1.47 16 2 C -0.16 -3.93 5.90 -104.31 -0.62 -4.55 16 3 C -0.16 -3.66 9.46 -39.77 -0.38 -4.04 16 4 C 0.10 2.18 6.67 -83.69 -0.56 1.62 16 5 N -0.76 -13.53 5.70 -58.50 -0.33 -13.87 16 6 C 0.14 2.16 4.81 -4.04 -0.02 2.14 16 7 C -0.13 -1.45 4.71 -26.73 -0.13 -1.58 16 8 C 0.08 0.84 3.36 -66.19 -0.22 0.62 16 9 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 10 C -0.15 -1.25 6.50 -24.60 -0.16 -1.41 16 11 C -0.14 -1.11 6.94 -24.91 -0.17 -1.28 16 12 C 0.05 0.41 7.58 -2.84 -0.02 0.39 16 13 N -0.68 -7.31 6.95 -103.85 -0.72 -8.03 16 14 C -0.17 -4.05 9.23 -39.77 -0.37 -4.41 16 15 C -0.12 -3.21 8.62 -39.26 -0.34 -3.54 16 16 C 0.08 2.09 5.56 -106.79 -0.59 1.49 16 17 C -0.46 -12.56 8.09 -37.88 -0.31 -12.87 16 18 H 0.07 1.93 6.88 -52.49 -0.36 1.57 16 19 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 20 N -0.81 -21.80 10.97 55.54 0.61 -21.19 16 21 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.37 6.78 -51.93 -0.35 1.02 16 28 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.38 5.96 8.47 -40.82 -0.35 5.62 16 30 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 31 H 0.05 0.87 7.66 -51.93 -0.40 0.48 16 32 H 0.06 0.67 8.02 -51.93 -0.42 0.25 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.34 3.58 8.28 -39.29 -0.33 3.25 16 41 H 0.09 1.99 6.68 -52.48 -0.35 1.64 16 42 H 0.12 3.26 6.23 -52.48 -0.33 2.93 16 43 H 0.27 6.80 8.30 -40.82 -0.34 6.46 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -28.61 341.08 -11.03 -39.64 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.07 Total: 10.92 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.63 Total: -27.06 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.45 Total: -43.08 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.61 -11.03 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169566760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.344 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds