Wall clock time and date at job start Mon Mar 30 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36354 * 120.08173 * 2 1 4 4 C 1.39545 * 120.15935 * 180.25576 * 3 2 1 5 5 N 1.38854 * 119.84528 * 179.75917 * 4 3 2 6 6 C 1.46505 * 120.00451 * 179.71996 * 5 4 3 7 7 C 1.53002 * 109.47157 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46812 * 180.02562 * 7 6 5 9 9 H 1.08993 * 110.33356 * 54.29576 * 8 7 6 10 10 C 1.54902 * 110.46528 * 176.62078 * 8 7 6 11 11 C 1.55134 * 101.65304 * 155.94667 * 10 8 7 12 12 C 1.54315 * 103.01933 * 324.34148 * 11 10 8 13 13 N 1.47447 * 107.23212 * 22.28631 * 12 11 10 14 14 C 1.39589 * 120.31476 * 359.47931 * 4 3 2 15 15 C 1.36324 * 120.16129 * 0.28015 * 14 4 3 16 16 C 1.40866 * 120.07583 * 179.76163 * 2 1 3 17 17 C 1.41133 * 120.15973 * 0.02562 * 16 2 1 18 18 H 1.07999 * 119.99686 * 333.64354 * 17 16 2 19 19 C 1.39865 * 120.00010 * 153.64302 * 17 16 2 20 20 N 1.30900 * 120.00408 * 343.80054 * 19 17 16 21 21 Si 1.86801 * 119.99912 * 163.79526 * 19 17 16 22 22 H 1.48500 * 109.47267 * 94.96525 * 21 19 17 23 23 H 1.48503 * 109.47529 * 214.96415 * 21 19 17 24 24 H 1.48501 * 109.47114 * 334.96666 * 21 19 17 25 25 H 1.09005 * 109.47414 * 270.24193 * 1 2 3 26 26 H 1.09005 * 109.47305 * 30.24104 * 1 2 3 27 27 H 1.08998 * 109.47422 * 150.24002 * 1 2 3 28 28 H 1.07998 * 119.91965 * 0.02562 * 3 2 1 29 29 H 0.97006 * 120.00257 * 359.72593 * 5 4 3 30 30 H 1.08997 * 109.46571 * 60.00362 * 6 5 4 31 31 H 1.08999 * 109.46899 * 300.00251 * 6 5 4 32 32 H 1.08997 * 109.47074 * 60.00683 * 7 6 5 33 33 H 1.08995 * 109.47025 * 300.00224 * 7 6 5 34 34 H 1.09000 * 110.99027 * 274.03560 * 10 8 7 35 35 H 1.09004 * 110.99671 * 37.85123 * 10 8 7 36 36 H 1.09001 * 110.70839 * 205.96123 * 11 10 8 37 37 H 1.09003 * 110.85959 * 82.79486 * 11 10 8 38 38 H 1.09001 * 109.89198 * 262.87713 * 12 11 10 39 39 H 1.09004 * 110.02067 * 141.76598 * 12 11 10 40 40 H 1.00899 * 110.99589 * 238.72143 * 13 12 11 41 41 H 1.08004 * 119.91837 * 180.25752 * 14 4 3 42 42 H 1.08003 * 120.08052 * 179.97438 * 15 14 4 43 43 H 0.96997 * 120.00194 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0054 5 7 4.2753 2.3871 -0.0104 6 6 5.7403 2.3932 -0.0099 7 6 6.2443 3.8378 -0.0167 8 6 7.7744 3.8440 -0.0168 9 1 8.1555 3.2453 -0.8439 10 6 8.3100 5.2945 -0.1091 11 6 9.7201 5.1486 0.5210 12 6 9.4984 4.0984 1.6297 13 7 8.2911 3.3320 1.2703 14 6 4.2921 -0.0223 0.0001 15 6 3.6220 -1.2094 0.0051 16 6 2.2129 -1.2190 0.0051 17 6 1.5123 -2.4441 0.0096 18 1 0.5166 -2.4951 0.4247 19 6 2.1075 -3.5921 -0.5234 20 7 3.1558 -3.4855 -1.3001 21 14 1.4066 -5.2776 -0.1267 22 1 0.4722 -5.6912 -1.2042 23 1 2.5132 -6.2628 -0.0261 24 1 0.6772 -5.2188 1.1654 25 1 -0.3634 0.0043 1.0277 26 1 -0.3634 0.8878 -0.5176 27 1 -0.3634 -0.8921 -0.5101 28 1 1.6505 2.1152 0.0004 29 1 3.7869 3.2252 -0.0142 30 1 6.1060 1.8770 -0.8975 31 1 6.1054 1.8847 0.8825 32 1 5.8786 4.3544 0.8707 33 1 5.8792 4.3458 -0.9092 34 1 8.3780 5.6203 -1.1471 35 1 7.6910 5.9773 0.4729 36 1 10.0515 6.0953 0.9477 37 1 10.4384 4.7866 -0.2146 38 1 9.3499 4.5963 2.5879 39 1 10.3578 3.4305 1.6884 40 1 7.5911 3.3998 1.9938 41 1 5.3721 -0.0133 0.0001 42 1 4.1697 -2.1402 0.0089 43 1 3.5687 -4.2817 -1.6694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169566760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:48 Heat of formation + Delta-G solvation = -10.154106 kcal Electronic energy + Delta-G solvation = -20427.011428 eV Core-core repulsion = 17469.816007 eV Total energy + Delta-G solvation = -2957.195422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.09380 -39.59400 -37.02302 -35.06732 -33.36017 -32.36227 -30.93251 -30.42030 -28.35238 -27.28999 -25.72464 -23.81102 -22.74556 -21.81742 -21.46966 -20.73603 -18.98087 -17.72704 -17.04154 -16.82540 -16.60295 -16.17352 -15.73397 -15.53118 -14.81213 -14.55155 -14.47332 -14.33957 -14.11242 -13.62469 -13.51971 -13.28630 -12.92018 -12.84243 -12.72503 -12.69663 -12.58688 -12.42225 -12.25348 -12.13926 -11.80417 -11.70215 -11.56193 -11.36219 -11.08782 -10.99762 -10.17098 -9.37121 -9.16908 -8.48805 -8.10085 -5.94871 1.12822 1.21548 1.41238 1.53804 1.60966 2.29523 2.87849 2.90780 3.27000 3.77393 3.84900 3.87083 3.93159 4.20215 4.27516 4.35511 4.48319 4.51647 4.55204 4.61377 4.75814 4.79450 4.87247 4.94505 4.98168 5.05873 5.07111 5.08125 5.16634 5.18536 5.22114 5.34876 5.36229 5.39436 5.54545 5.77682 5.94921 5.98769 6.00786 6.26890 6.46094 6.47208 6.71489 6.91979 7.14903 7.21264 7.37738 8.54164 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.003290 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.793519 B = 8509.119890 C = 9237.085962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.169 4.169 4 C 0.114 3.886 5 N -0.753 5.753 6 C 0.143 3.857 7 C -0.116 4.116 8 C 0.082 3.918 9 H 0.074 0.926 10 C -0.143 4.143 11 C -0.138 4.138 12 C 0.043 3.957 13 N -0.699 5.699 14 C -0.184 4.184 15 C -0.142 4.142 16 C 0.035 3.965 17 C -0.493 4.493 18 H 0.073 0.927 19 C 0.028 3.972 20 N -0.847 5.847 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.260 1.260 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.397 0.603 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.341 0.659 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 15.938 3.057 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.192 4.192 4 C 0.014 3.986 5 N -0.388 5.388 6 C 0.018 3.982 7 C -0.154 4.154 8 C -0.028 4.028 9 H 0.092 0.908 10 C -0.182 4.182 11 C -0.176 4.176 12 C -0.086 4.086 13 N -0.329 5.329 14 C -0.206 4.206 15 C -0.162 4.162 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.092 0.908 19 C -0.183 4.183 20 N -0.476 5.476 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.184 1.184 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.231 0.769 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.453 15.167 2.655 18.068 hybrid contribution -0.534 -0.113 0.196 0.579 sum 8.919 15.054 2.850 17.729 Atomic orbital electron populations 1.20403 0.91525 1.01135 1.00660 1.19789 0.96076 0.92610 1.08307 1.19975 0.91858 0.97112 1.10206 1.17475 0.90940 0.86173 1.03976 1.43937 1.04638 1.04205 1.86010 1.21018 0.80321 0.97394 0.99449 1.21884 0.94844 0.95049 1.03648 1.22434 0.92829 0.94633 0.92919 0.90756 1.23149 0.96431 0.96292 1.02354 1.22762 0.97186 0.99541 0.98152 1.22680 0.93471 0.94357 0.98119 1.61813 1.08914 1.57048 1.05152 1.20194 0.97717 0.92191 1.10483 1.20842 0.94969 0.96128 1.04306 1.17702 0.92048 0.92980 0.94034 1.19552 1.02370 0.93665 1.36879 0.90845 1.26616 0.94756 1.04465 0.92429 1.69936 1.20808 1.32071 1.24743 0.85336 0.78609 0.76947 0.79622 1.19084 1.19744 1.18384 0.92623 0.91878 0.93207 0.86518 0.76900 0.95202 0.93935 0.90443 0.89817 0.89888 0.90557 0.89645 0.91152 0.92060 0.91411 0.84192 0.88631 0.88802 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.33 9.39 71.24 0.67 -2.66 16 2 C -0.17 -8.16 5.90 -19.66 -0.12 -8.28 16 3 C -0.17 -7.47 9.46 22.15 0.21 -7.26 16 4 C 0.11 4.99 6.67 38.67 0.26 5.24 16 5 N -0.75 -25.12 5.70 -338.98 -1.93 -27.05 16 6 C 0.14 4.16 4.81 86.38 0.42 4.58 16 7 C -0.12 -2.28 4.71 30.60 0.14 -2.14 16 8 C 0.08 1.54 3.36 45.39 0.15 1.70 16 9 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 10 C -0.14 -2.00 6.50 31.98 0.21 -1.80 16 11 C -0.14 -1.84 6.94 31.77 0.22 -1.62 16 12 C 0.04 0.69 7.58 86.64 0.66 1.35 16 13 N -0.70 -14.22 6.95 -482.46 -3.35 -17.57 16 14 C -0.18 -9.07 9.23 22.15 0.20 -8.87 16 15 C -0.14 -7.96 8.62 22.48 0.19 -7.77 16 16 C 0.04 1.97 5.56 -21.27 -0.12 1.85 16 17 C -0.49 -27.61 8.09 23.37 0.19 -27.42 16 18 H 0.07 3.94 6.88 -2.91 -0.02 3.92 16 19 C 0.03 1.52 5.15 85.23 0.44 1.96 16 20 N -0.85 -47.48 10.97 21.82 0.24 -47.24 16 21 Si 0.97 40.86 29.59 68.60 2.03 42.89 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 25 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.06 2.23 8.08 -2.38 -0.02 2.21 16 27 H 0.05 2.16 6.78 -2.39 -0.02 2.15 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.40 11.09 8.47 -92.70 -0.79 10.31 16 30 H 0.03 0.98 7.93 -2.39 -0.02 0.96 16 31 H 0.04 1.36 7.66 -2.39 -0.02 1.34 16 32 H 0.08 1.36 8.02 -2.39 -0.02 1.35 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 0.97 8.06 -2.39 -0.02 0.95 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.34 6.72 8.28 -89.69 -0.74 5.97 16 41 H 0.10 4.45 6.68 -2.91 -0.02 4.43 16 42 H 0.09 5.57 6.23 -2.91 -0.02 5.55 16 43 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -63.59 341.08 0.19 -63.40 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.52 Total: 36.71 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 3.73 Total: -51.14 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -5.04 Total: -91.86 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -63.59 0.19 -63.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169566760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.249 kcal (2) G-P(sol) polarization free energy of solvation -63.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds